Phylogenetic lineages in the Capnodiales
Identifieur interne : 000B22 ( Ncbi/Merge ); précédent : 000B21; suivant : 000B23Phylogenetic lineages in the Capnodiales
Auteurs : P. W. Crous ; C. L. Schoch ; K. D. Hyde ; A. R. Wood ; C. Gueidan ; G. S. De Hoog ; J. Z. GroenewaldSource :
- Studies in Mycology [ 0166-0616 ] ; 2009.
Abstract
The
Url:
DOI: 10.3114/sim.2009.64.02
PubMed: 20169022
PubMed Central: 2816965
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Phylogenetic lineages in the <italic>Capnodiales</italic>
</title>
<author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name>
<affiliation><nlm:aff id="aff1"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands</italic>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="aff2"><italic>Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</italic>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Schoch, C L" sort="Schoch, C L" uniqKey="Schoch C" first="C. L." last="Schoch">C. L. Schoch</name>
<affiliation><nlm:aff id="aff3"><italic>National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.</italic>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Hyde, K D" sort="Hyde, K D" uniqKey="Hyde K" first="K. D." last="Hyde">K. D. Hyde</name>
<affiliation><nlm:aff id="aff4"><italic>School of Science, Mae Fah Luang University, Tasud, Muang, Chiang Rai 57100, Thailand</italic>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Wood, A R" sort="Wood, A R" uniqKey="Wood A" first="A. R." last="Wood">A. R. Wood</name>
<affiliation><nlm:aff id="aff5"><italic>ARC – Plant Protection Research Institute, P. Bag X5017, Stellenbosch, 7599, South Africa</italic>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Gueidan, C" sort="Gueidan, C" uniqKey="Gueidan C" first="C." last="Gueidan">C. Gueidan</name>
<affiliation><nlm:aff id="aff1"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands</italic>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="De Hoog, G S" sort="De Hoog, G S" uniqKey="De Hoog G" first="G. S." last="De Hoog">G. S. De Hoog</name>
<affiliation><nlm:aff id="aff1"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands</italic>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Groenewald, J Z" sort="Groenewald, J Z" uniqKey="Groenewald J" first="J. Z." last="Groenewald">J. Z. Groenewald</name>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Phylogenetic lineages in the <italic>Capnodiales</italic>
</title>
<author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name>
<affiliation><nlm:aff id="aff1"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands</italic>
</nlm:aff>
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<affiliation><nlm:aff id="aff2"><italic>Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</italic>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Schoch, C L" sort="Schoch, C L" uniqKey="Schoch C" first="C. L." last="Schoch">C. L. Schoch</name>
<affiliation><nlm:aff id="aff3"><italic>National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.</italic>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Hyde, K D" sort="Hyde, K D" uniqKey="Hyde K" first="K. D." last="Hyde">K. D. Hyde</name>
<affiliation><nlm:aff id="aff4"><italic>School of Science, Mae Fah Luang University, Tasud, Muang, Chiang Rai 57100, Thailand</italic>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Wood, A R" sort="Wood, A R" uniqKey="Wood A" first="A. R." last="Wood">A. R. Wood</name>
<affiliation><nlm:aff id="aff5"><italic>ARC – Plant Protection Research Institute, P. Bag X5017, Stellenbosch, 7599, South Africa</italic>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Gueidan, C" sort="Gueidan, C" uniqKey="Gueidan C" first="C." last="Gueidan">C. Gueidan</name>
<affiliation><nlm:aff id="aff1"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands</italic>
</nlm:aff>
</affiliation>
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<author><name sortKey="De Hoog, G S" sort="De Hoog, G S" uniqKey="De Hoog G" first="G. S." last="De Hoog">G. S. De Hoog</name>
<affiliation><nlm:aff id="aff1"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands</italic>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Groenewald, J Z" sort="Groenewald, J Z" uniqKey="Groenewald J" first="J. Z." last="Groenewald">J. Z. Groenewald</name>
<affiliation><nlm:aff id="aff1"><italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands</italic>
</nlm:aff>
</affiliation>
</author>
</analytic>
<series><title level="j">Studies in Mycology</title>
<idno type="ISSN">0166-0616</idno>
<idno type="eISSN">1872-9797</idno>
<imprint><date when="2009">2009</date>
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<front><div type="abstract" xml:lang="en"><p>The <italic>Capnodiales</italic>
incorporates plant and human pathogens,
endophytes, saprobes and epiphytes, with a wide range of nutritional modes.
Several species are lichenised, or occur as parasites on fungi, or animals.
The aim of the present study was to use DNA sequence data of the nuclear
ribosomal small and large subunit RNA genes to test the monophyly of the
<italic>Capnodiales</italic>
, and resolve families within the order. We designed
primers to allow the amplification and sequencing of almost the complete
nuclear ribosomal small and large subunit RNA genes. Other than the
<italic>Capnodiaceae</italic>
(sooty moulds), and the <italic>Davidiellaceae</italic>
, which
contains saprobes and plant pathogens, the order presently incorporates
families of major plant pathological importance such as the
<italic>Mycosphaerellaceae</italic>
, <italic>Teratosphaeriaceae</italic>
and
<italic>Schizothyriaceae</italic>
. The <italic>Piedraiaceae</italic>
was not supported, but
resolves in the <italic>Teratosphaeriaceae</italic>
. The <italic>Dissoconiaceae</italic>
is
introduced as a new family to accommodate <italic>Dissoconium</italic>
and
<italic>Ramichloridium</italic>
. Lichenisation, as well as the ability to be saprobic
or plant pathogenic evolved more than once in several families, though the
taxa in the upper clades of the tree lead us to conclude that the strictly
plant pathogenic, nectrotrophic families evolved from saprobic ancestors
(<italic>Capnodiaceae</italic>
), which is the more primitive state.</p>
</div>
</front>
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<pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Stud Mycol</journal-id>
<journal-id journal-id-type="publisher-id">simycol</journal-id>
<journal-title-group><journal-title>Studies in Mycology</journal-title>
</journal-title-group>
<issn pub-type="ppub">0166-0616</issn>
<issn pub-type="epub">1872-9797</issn>
<publisher><publisher-name>CBS Fungal Biodiversity Centre</publisher-name>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">20169022</article-id>
<article-id pub-id-type="pmc">2816965</article-id>
<article-id pub-id-type="publisher-id">0017</article-id>
<article-id pub-id-type="doi">10.3114/sim.2009.64.02</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Articles</subject>
</subj-group>
</article-categories>
<title-group><article-title>Phylogenetic lineages in the <italic>Capnodiales</italic>
</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Crous</surname>
<given-names>P.W.</given-names>
</name>
<xref ref-type="aff" rid="aff1">1</xref>
<xref ref-type="aff" rid="aff2">2</xref>
<xref ref-type="corresp" rid="cor1">*</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Schoch</surname>
<given-names>C.L.</given-names>
</name>
<xref ref-type="aff" rid="aff3">3</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Hyde</surname>
<given-names>K.D.</given-names>
</name>
<xref ref-type="aff" rid="aff4">4</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Wood</surname>
<given-names>A.R.</given-names>
</name>
<xref ref-type="aff" rid="aff5">5</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Gueidan</surname>
<given-names>C.</given-names>
</name>
<xref ref-type="aff" rid="aff1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>de Hoog</surname>
<given-names>G.S.</given-names>
</name>
<xref ref-type="aff" rid="aff1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Groenewald</surname>
<given-names>J.Z.</given-names>
</name>
<xref ref-type="aff" rid="aff1">1</xref>
</contrib>
</contrib-group>
<aff id="aff1"><label>1</label>
<italic>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands</italic>
</aff>
<aff id="aff2"><label>2</label>
<italic>Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</italic>
</aff>
<aff id="aff3"><label>3</label>
<italic>National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.</italic>
</aff>
<aff id="aff4"><label>4</label>
<italic>School of Science, Mae Fah Luang University, Tasud, Muang, Chiang Rai 57100, Thailand</italic>
</aff>
<aff id="aff5"><label>5</label>
<italic>ARC – Plant Protection Research Institute, P. Bag X5017, Stellenbosch, 7599, South Africa</italic>
</aff>
<author-notes><corresp id="cor1"><label>*</label>
<italic>Correspondence</italic>
: Pedro W. Crous,
<email>p.crous@cbs.knaw.nl</email>
</corresp>
</author-notes>
<pub-date pub-type="ppub"><year>2009</year>
</pub-date>
<volume>64</volume>
<issue-title>A phylogenetic re-evaluation of
<italic>Dothideomycetes</italic>
</issue-title>
<fpage>17</fpage>
<lpage>47-S7</lpage>
<permissions><copyright-statement>Copyright © Copyright 2009 CBS-KNAW Fungal Biodiversity
Centre</copyright-statement>
<copyright-year>2009</copyright-year>
<license><license-p>You are free to share - to copy, distribute and transmit the work, under
the following conditions:</license-p>
<license-p><bold>Attribution:</bold>
You must attribute
the work in the manner specified by the author or licensor (but not in any way
that suggests that they endorse you or your use of the
work).</license-p>
<license-p><bold>Non-commercial:</bold>
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<license-p><bold>No derivative works:</bold>
You may not
alter, transform, or build upon this work.</license-p>
<license-p>For any reuse or
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which can be found at
<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode">http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode.</ext-link>
Any of the above
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Nothing in this license impairs or restricts the author's moral rights.</license-p>
</license>
</permissions>
<self-uri xlink:title="pdf" xlink:href="17.pdf"></self-uri>
<abstract><p>The <italic>Capnodiales</italic>
incorporates plant and human pathogens,
endophytes, saprobes and epiphytes, with a wide range of nutritional modes.
Several species are lichenised, or occur as parasites on fungi, or animals.
The aim of the present study was to use DNA sequence data of the nuclear
ribosomal small and large subunit RNA genes to test the monophyly of the
<italic>Capnodiales</italic>
, and resolve families within the order. We designed
primers to allow the amplification and sequencing of almost the complete
nuclear ribosomal small and large subunit RNA genes. Other than the
<italic>Capnodiaceae</italic>
(sooty moulds), and the <italic>Davidiellaceae</italic>
, which
contains saprobes and plant pathogens, the order presently incorporates
families of major plant pathological importance such as the
<italic>Mycosphaerellaceae</italic>
, <italic>Teratosphaeriaceae</italic>
and
<italic>Schizothyriaceae</italic>
. The <italic>Piedraiaceae</italic>
was not supported, but
resolves in the <italic>Teratosphaeriaceae</italic>
. The <italic>Dissoconiaceae</italic>
is
introduced as a new family to accommodate <italic>Dissoconium</italic>
and
<italic>Ramichloridium</italic>
. Lichenisation, as well as the ability to be saprobic
or plant pathogenic evolved more than once in several families, though the
taxa in the upper clades of the tree lead us to conclude that the strictly
plant pathogenic, nectrotrophic families evolved from saprobic ancestors
(<italic>Capnodiaceae</italic>
), which is the more primitive state.</p>
</abstract>
<kwd-group><kwd><italic>Ascomycetes</italic>
</kwd>
<kwd><italic>Brunneosphaerella</italic>
</kwd>
<kwd><italic>Capnodiales</italic>
</kwd>
<kwd>DNA sequence comparisons</kwd>
<kwd><italic>Mycosphaerella</italic>
</kwd>
<kwd>novel primers</kwd>
<kwd>systematics</kwd>
</kwd-group>
</article-meta>
<notes><fn-group><fn><p><bold>Taxonomic novelties:</bold>
<italic>Brunneosphaerella</italic>
Crous, gen. nov.,
<italic>B. jonkershoekensis</italic>
(Marinc., M.J. Wingf. & Crous) Crous, comb.
nov., <italic>B. protearum</italic>
(Syd. & P. Syd.) Crous, comb. nov.,
<italic>Devriesia hilliana</italic>
Crous & U. Braun, sp. nov., <italic>D.
lagerstroemiae</italic>
Crous & M.J. Wingf., sp. nov., <italic>D.
strelitziicola</italic>
Arzanlou & Crous, sp. nov., <italic>Dissoconiaceae</italic>
Crous & de Hoog, fam. nov., <italic>Hortaea thailandica</italic>
Crous & K.D.
Hyde, sp. nov., <italic>Passalora ageratinae</italic>
Crous & A.R. Wood, sp. nov.,
<italic>P. armatae</italic>
Crous & A.R. Wood, sp. nov., <italic>Rachicladosporium
cboliae</italic>
Crous, sp. nov.</p>
</fn>
</fn-group>
</notes>
</front>
</pmc>
<affiliations><list></list>
<tree><noCountry><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name>
<name sortKey="De Hoog, G S" sort="De Hoog, G S" uniqKey="De Hoog G" first="G. S." last="De Hoog">G. S. De Hoog</name>
<name sortKey="Groenewald, J Z" sort="Groenewald, J Z" uniqKey="Groenewald J" first="J. Z." last="Groenewald">J. Z. Groenewald</name>
<name sortKey="Gueidan, C" sort="Gueidan, C" uniqKey="Gueidan C" first="C." last="Gueidan">C. Gueidan</name>
<name sortKey="Hyde, K D" sort="Hyde, K D" uniqKey="Hyde K" first="K. D." last="Hyde">K. D. Hyde</name>
<name sortKey="Schoch, C L" sort="Schoch, C L" uniqKey="Schoch C" first="C. L." last="Schoch">C. L. Schoch</name>
<name sortKey="Wood, A R" sort="Wood, A R" uniqKey="Wood A" first="A. R." last="Wood">A. R. Wood</name>
</noCountry>
</tree>
</affiliations>
</record>
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