Genomic identification of WRKY transcription factors in carrot (Daucus carota) and analysis of evolution and homologous groups for plants
Identifieur interne : 001F58 ( Ncbi/Checkpoint ); précédent : 001F57; suivant : 001F59Genomic identification of WRKY transcription factors in carrot (Daucus carota) and analysis of evolution and homologous groups for plants
Auteurs : Meng-Yao Li [République populaire de Chine] ; Zhi-Sheng Xu [République populaire de Chine] ; Chang Tian [République populaire de Chine] ; Ying Huang [République populaire de Chine] ; Feng Wang [République populaire de Chine] ; Ai-Sheng Xiong [République populaire de Chine]Source :
- Scientific Reports [ 2045-2322 ] ; 2016.
Abstract
WRKY transcription factors belong to one of the largest transcription factor families. These factors possess functions in plant growth and development, signal transduction, and stress response. Here, we identified 95
Url:
DOI: 10.1038/srep23101
PubMed: 26975939
PubMed Central: 4792144
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genomic identification of WRKY transcription factors in carrot (<italic>Daucus carota</italic>) and analysis of evolution and homologous groups for plants</title><author><name sortKey="Li, Meng Yao" sort="Li, Meng Yao" uniqKey="Li M" first="Meng-Yao" last="Li">Meng-Yao Li</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University</institution>, 1 Weigang, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Xu, Zhi Sheng" sort="Xu, Zhi Sheng" uniqKey="Xu Z" first="Zhi-Sheng" last="Xu">Zhi-Sheng Xu</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University</institution>, 1 Weigang, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Tian, Chang" sort="Tian, Chang" uniqKey="Tian C" first="Chang" last="Tian">Chang Tian</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University</institution>, 1 Weigang, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Huang, Ying" sort="Huang, Ying" uniqKey="Huang Y" first="Ying" last="Huang">Ying Huang</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University</institution>, 1 Weigang, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Wang, Feng" sort="Wang, Feng" uniqKey="Wang F" first="Feng" last="Wang">Feng Wang</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University</institution>, 1 Weigang, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Xiong, Ai Sheng" sort="Xiong, Ai Sheng" uniqKey="Xiong A" first="Ai-Sheng" last="Xiong">Ai-Sheng Xiong</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University</institution>, 1 Weigang, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26975939</idno><idno type="pmc">4792144</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4792144</idno><idno type="RBID">PMC:4792144</idno><idno type="doi">10.1038/srep23101</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000459</idno><idno type="wicri:Area/Pmc/Curation">000458</idno><idno type="wicri:Area/Pmc/Checkpoint">000156</idno><idno type="wicri:Area/Ncbi/Merge">001F58</idno><idno type="wicri:Area/Ncbi/Curation">001F58</idno><idno type="wicri:Area/Ncbi/Checkpoint">001F58</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genomic identification of WRKY transcription factors in carrot (<italic>Daucus carota</italic>) and analysis of evolution and homologous groups for plants</title><author><name sortKey="Li, Meng Yao" sort="Li, Meng Yao" uniqKey="Li M" first="Meng-Yao" last="Li">Meng-Yao Li</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University</institution>, 1 Weigang, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Xu, Zhi Sheng" sort="Xu, Zhi Sheng" uniqKey="Xu Z" first="Zhi-Sheng" last="Xu">Zhi-Sheng Xu</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University</institution>, 1 Weigang, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Tian, Chang" sort="Tian, Chang" uniqKey="Tian C" first="Chang" last="Tian">Chang Tian</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University</institution>, 1 Weigang, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Huang, Ying" sort="Huang, Ying" uniqKey="Huang Y" first="Ying" last="Huang">Ying Huang</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University</institution>, 1 Weigang, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Wang, Feng" sort="Wang, Feng" uniqKey="Wang F" first="Feng" last="Wang">Feng Wang</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University</institution>, 1 Weigang, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Xiong, Ai Sheng" sort="Xiong, Ai Sheng" uniqKey="Xiong A" first="Ai-Sheng" last="Xiong">Ai-Sheng Xiong</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University</institution>, 1 Weigang, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">Scientific Reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>WRKY transcription factors belong to one of the largest transcription factor families. These factors possess functions in plant growth and development, signal transduction, and stress response. Here, we identified 95 <italic>DcWRKY</italic> genes in carrot based on the carrot genomic and transcriptomic data, and divided them into three groups. Phylogenetic analysis of WRKY proteins from carrot and <italic>Arabidopsis</italic> divided these proteins into seven subgroups. To elucidate the evolution and distribution of WRKY transcription factors in different species, we constructed a schematic of the phylogenetic tree and compared the WRKY family factors among 22 species, which including plants, slime mold and protozoan. An in-depth study was performed to clarify the homologous factor groups of nine divergent taxa in lower and higher plants. Based on the orthologous factors between carrot and <italic>Arabidopsis</italic>, 38 DcWRKY proteins were calculated to interact with other proteins in the carrot genome. Yeast two-hybrid assay showed that DcWRKY20 can interact with DcMAPK1 and DcMAPK4. The expression patterns of the selected <italic>DcWRKY</italic> genes based on transcriptome data and qRT-PCR suggested that those selected <italic>DcWRKY</italic> genes are involved in root development, biotic and abiotic stress response. This comprehensive analysis provides a basis for investigating the evolution and function of <italic>WRKY</italic> genes.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Valliyodan, B" uniqKey="Valliyodan B">B. Valliyodan</name></author><author><name sortKey="Nguyen, H T" uniqKey="Nguyen H">H. T. Nguyen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hobert, O" uniqKey="Hobert O">O. Hobert</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jin, J P" uniqKey="Jin J">J. P. Jin</name></author><author><name sortKey="Zhang, H" uniqKey="Zhang H">H. 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Villa</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Li, L" uniqKey="Li L">L. Li</name></author><author><name sortKey="Stoeckert, C J" uniqKey="Stoeckert C">C. J. Stoeckert</name></author><author><name sortKey="Roos, D S" uniqKey="Roos D">D. S. Roos</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Shannon, P" uniqKey="Shannon P">P. Shannon</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mortazavi, A" uniqKey="Mortazavi A">A. Mortazavi</name></author><author><name sortKey="Williams, B A" uniqKey="Williams B">B. A. Williams</name></author><author><name sortKey="Mccue, K" uniqKey="Mccue K">K. McCue</name></author><author><name sortKey="Schaeffer, L" uniqKey="Schaeffer L">L. Schaeffer</name></author><author><name sortKey="Wold, B" uniqKey="Wold B">B. Wold</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Saeed, A" uniqKey="Saeed A">A. 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Pfaffl</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Li, Meng Yao" sort="Li, Meng Yao" uniqKey="Li M" first="Meng-Yao" last="Li">Meng-Yao Li</name></noRegion><name sortKey="Huang, Ying" sort="Huang, Ying" uniqKey="Huang Y" first="Ying" last="Huang">Ying Huang</name><name sortKey="Tian, Chang" sort="Tian, Chang" uniqKey="Tian C" first="Chang" last="Tian">Chang Tian</name><name sortKey="Wang, Feng" sort="Wang, Feng" uniqKey="Wang F" first="Feng" last="Wang">Feng Wang</name><name sortKey="Xiong, Ai Sheng" sort="Xiong, Ai Sheng" uniqKey="Xiong A" first="Ai-Sheng" last="Xiong">Ai-Sheng Xiong</name><name sortKey="Xu, Zhi Sheng" sort="Xu, Zhi Sheng" uniqKey="Xu Z" first="Zhi-Sheng" last="Xu">Zhi-Sheng Xu</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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