Phylogeny and Molecular Evolution Analysis of PIN-FORMED 1 in Angiosperm
Identifieur interne : 001612 ( Ncbi/Checkpoint ); précédent : 001611; suivant : 001613Phylogeny and Molecular Evolution Analysis of PIN-FORMED 1 in Angiosperm
Auteurs : Pengkai Wang [République populaire de Chine] ; Tielong Cheng [République populaire de Chine] ; Shuang Wu [République populaire de Chine] ; Fangfang Zhao [République populaire de Chine] ; Guangping Wang [République populaire de Chine] ; Liming Yang [République populaire de Chine] ; Mengzhu Lu [République populaire de Chine] ; Jinhui Chen [République populaire de Chine] ; Jisen Shi [République populaire de Chine]Source :
- PLoS ONE [ 1932-6203 ] ; 2014.
Abstract
PIN-FORMED 1 (PIN1) is an important secondary transporter and determines the direction of intercellular auxin flow. As PIN1 performs the conserved function of auxin transport, it is expected that the sequence and structure of PIN1 is conserved. Therefore, we hypothesized that PIN1 evolve under pervasive purifying selection in the protein-coding sequences in angiosperm. To test this hypothesis, we performed detailed evolutionary analyses of 67 PIN1 sequences from 35 angiosperm species. We found that the PIN1 sequences are highly conserved within their transmembrane regions, part of their hydrophilic regions. We also found that there are two or more
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DOI: 10.1371/journal.pone.0089289
PubMed: 24586663
PubMed Central: 3938449
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Phylogeny and Molecular Evolution Analysis of PIN-FORMED 1 in Angiosperm</title><author><name sortKey="Wang, Pengkai" sort="Wang, Pengkai" uniqKey="Wang P" first="Pengkai" last="Wang">Pengkai Wang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing</wicri:regionArea><wicri:noRegion>Nanjing</wicri:noRegion></affiliation></author><author><name sortKey="Cheng, Tielong" sort="Cheng, Tielong" uniqKey="Cheng T" first="Tielong" last="Cheng">Tielong Cheng</name><affiliation wicri:level="3"><nlm:aff id="aff2"><addr-line>Division of Research Management, Chinese Academy of Forestry, Beijing, 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Zhao</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing</wicri:regionArea><wicri:noRegion>Nanjing</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Guangping" sort="Wang, Guangping" uniqKey="Wang G" first="Guangping" last="Wang">Guangping Wang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing</wicri:regionArea><wicri:noRegion>Nanjing</wicri:noRegion></affiliation></author><author><name sortKey="Yang, Liming" sort="Yang, Liming" uniqKey="Yang L" first="Liming" last="Yang">Liming Yang</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>School of Life Sciences, Huaiyin Normal University, Huaian, Jiangsu, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Life Sciences, Huaiyin Normal University, Huaian, Jiangsu</wicri:regionArea><wicri:noRegion>Jiangsu</wicri:noRegion></affiliation></author><author><name sortKey="Lu, Mengzhu" sort="Lu, Mengzhu" uniqKey="Lu M" first="Mengzhu" last="Lu">Mengzhu Lu</name><affiliation wicri:level="3"><nlm:aff id="aff4"><addr-line>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Chen, Jinhui" sort="Chen, Jinhui" uniqKey="Chen J" first="Jinhui" last="Chen">Jinhui Chen</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing</wicri:regionArea><wicri:noRegion>Nanjing</wicri:noRegion></affiliation></author><author><name sortKey="Shi, Jisen" sort="Shi, Jisen" uniqKey="Shi J" first="Jisen" last="Shi">Jisen Shi</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing</wicri:regionArea><wicri:noRegion>Nanjing</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">24586663</idno><idno type="pmc">3938449</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3938449</idno><idno type="RBID">PMC:3938449</idno><idno type="doi">10.1371/journal.pone.0089289</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">001192</idno><idno type="wicri:Area/Pmc/Curation">001191</idno><idno type="wicri:Area/Pmc/Checkpoint">000744</idno><idno type="wicri:Area/Ncbi/Merge">001612</idno><idno type="wicri:Area/Ncbi/Curation">001612</idno><idno type="wicri:Area/Ncbi/Checkpoint">001612</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Phylogeny and Molecular Evolution Analysis of PIN-FORMED 1 in Angiosperm</title><author><name sortKey="Wang, Pengkai" sort="Wang, Pengkai" uniqKey="Wang P" first="Pengkai" last="Wang">Pengkai Wang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing</wicri:regionArea><wicri:noRegion>Nanjing</wicri:noRegion></affiliation></author><author><name sortKey="Cheng, Tielong" sort="Cheng, Tielong" uniqKey="Cheng T" first="Tielong" last="Cheng">Tielong Cheng</name><affiliation wicri:level="3"><nlm:aff id="aff2"><addr-line>Division of Research Management, Chinese Academy of Forestry, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Division of Research Management, Chinese Academy of Forestry, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Wu, Shuang" sort="Wu, Shuang" uniqKey="Wu S" first="Shuang" last="Wu">Shuang Wu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing</wicri:regionArea><wicri:noRegion>Nanjing</wicri:noRegion></affiliation></author><author><name sortKey="Zhao, Fangfang" sort="Zhao, Fangfang" uniqKey="Zhao F" first="Fangfang" last="Zhao">Fangfang Zhao</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing</wicri:regionArea><wicri:noRegion>Nanjing</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Guangping" sort="Wang, Guangping" uniqKey="Wang G" first="Guangping" last="Wang">Guangping Wang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing</wicri:regionArea><wicri:noRegion>Nanjing</wicri:noRegion></affiliation></author><author><name sortKey="Yang, Liming" sort="Yang, Liming" uniqKey="Yang L" first="Liming" last="Yang">Liming Yang</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>School of Life Sciences, Huaiyin Normal University, Huaian, Jiangsu, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Life Sciences, Huaiyin Normal University, Huaian, Jiangsu</wicri:regionArea><wicri:noRegion>Jiangsu</wicri:noRegion></affiliation></author><author><name sortKey="Lu, Mengzhu" sort="Lu, Mengzhu" uniqKey="Lu M" first="Mengzhu" last="Lu">Mengzhu Lu</name><affiliation wicri:level="3"><nlm:aff id="aff4"><addr-line>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Chen, Jinhui" sort="Chen, Jinhui" uniqKey="Chen J" first="Jinhui" last="Chen">Jinhui Chen</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing</wicri:regionArea><wicri:noRegion>Nanjing</wicri:noRegion></affiliation></author><author><name sortKey="Shi, Jisen" sort="Shi, Jisen" uniqKey="Shi J" first="Jisen" last="Shi">Jisen Shi</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education, Nanjing Forestry University, Nanjing</wicri:regionArea><wicri:noRegion>Nanjing</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>PIN-FORMED 1 (PIN1) is an important secondary transporter and determines the direction of intercellular auxin flow. As PIN1 performs the conserved function of auxin transport, it is expected that the sequence and structure of PIN1 is conserved. Therefore, we hypothesized that PIN1 evolve under pervasive purifying selection in the protein-coding sequences in angiosperm. To test this hypothesis, we performed detailed evolutionary analyses of 67 PIN1 sequences from 35 angiosperm species. We found that the PIN1 sequences are highly conserved within their transmembrane regions, part of their hydrophilic regions. We also found that there are two or more <italic>PIN1</italic> copies in some of these angiosperm species. PIN1 sequences from Poaceae and Brassicaceae are representative of the modern clade. We identified 12 highly conserved motifs and a significant number of family-specific sites within these motifs. One family-specific site within Motif 11 shows a different residue between monocots and dicots, and is functionally critical for the polarity of PIN1. Likewise, the function of PIN1 appears to be different between monocots and dicots since the phenotype associated with PIN1 overexpression is opposite between Arabidopsis and rice. The evolution of angiosperm <italic>PIN1</italic> protein-coding sequences appears to have been primarily driven by purifying selection, but traces of positive selection associated with sequences from certain families also seem to be present. We verified this observation by calculating the numbers of non-synonymous and synonymous changes on each branch of a phylogenetic tree. Our results indicate that the evolution of angiosperm PIN1 sequences involve strong purifying selection. In addition, our results suggest that the conserved sequences of PIN1 derive from a combination of the family-specific site variations and conserved motifs during their unique evolutionary processes, which is critical for the functional integrity and stability of these auxin transporters, especially in new species. Finally, functional difference of PIN1 is likely to be present in angiosperm because the positive selection is occurred in one branch of Poaceae.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Zhao, Y" uniqKey="Zhao Y">Y Zhao</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Benjamins, R" uniqKey="Benjamins R">R Benjamins</name></author><author><name sortKey="Scheres, B" uniqKey="Scheres B">B Scheres</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kazan, K" uniqKey="Kazan K">K Kazan</name></author><author><name sortKey="Manners, Jm" uniqKey="Manners J">JM Manners</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Muday, Gk" uniqKey="Muday G">GK Muday</name></author><author><name sortKey="Delong, A" uniqKey="Delong A">A DeLong</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name 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Z" uniqKey="Yang Z">Z Yang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhang, J" uniqKey="Zhang J">J Zhang</name></author><author><name sortKey="Kumar, S" uniqKey="Kumar S">S Kumar</name></author><author><name sortKey="Nei, M" uniqKey="Nei M">M Nei</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhang, J" uniqKey="Zhang J">J Zhang</name></author><author><name sortKey="Vanneste, S" uniqKey="Vanneste S">S Vanneste</name></author><author><name sortKey="Brewer, Pb" uniqKey="Brewer P">PB Brewer</name></author><author><name sortKey="Michniewicz, M" uniqKey="Michniewicz M">M Michniewicz</name></author><author><name sortKey="Grones, P" uniqKey="Grones P">P Grones</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Xu, M" uniqKey="Xu M">M Xu</name></author><author><name sortKey="Zhu, L" uniqKey="Zhu L">L Zhu</name></author><author><name sortKey="Shou, H" uniqKey="Shou H">H Shou</name></author><author><name sortKey="Wu, P" uniqKey="Wu P">P Wu</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Wang, Pengkai" sort="Wang, Pengkai" uniqKey="Wang P" first="Pengkai" last="Wang">Pengkai Wang</name></noRegion><name sortKey="Chen, Jinhui" sort="Chen, Jinhui" uniqKey="Chen J" first="Jinhui" last="Chen">Jinhui Chen</name><name sortKey="Cheng, Tielong" sort="Cheng, Tielong" uniqKey="Cheng T" first="Tielong" last="Cheng">Tielong Cheng</name><name sortKey="Lu, Mengzhu" sort="Lu, Mengzhu" uniqKey="Lu M" first="Mengzhu" last="Lu">Mengzhu Lu</name><name sortKey="Shi, Jisen" sort="Shi, Jisen" uniqKey="Shi J" first="Jisen" last="Shi">Jisen Shi</name><name sortKey="Wang, Guangping" sort="Wang, Guangping" uniqKey="Wang G" first="Guangping" last="Wang">Guangping Wang</name><name sortKey="Wu, Shuang" sort="Wu, Shuang" uniqKey="Wu S" first="Shuang" last="Wu">Shuang Wu</name><name sortKey="Yang, Liming" sort="Yang, Liming" uniqKey="Yang L" first="Liming" last="Yang">Liming Yang</name><name sortKey="Zhao, Fangfang" sort="Zhao, Fangfang" uniqKey="Zhao F" first="Fangfang" last="Zhao">Fangfang Zhao</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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