Sizing up Septoria
Identifieur interne : 001414 ( Ncbi/Checkpoint ); précédent : 001413; suivant : 001415Sizing up Septoria
Auteurs : W. Quaedvlieg [Pays-Bas] ; G. J. M. Verkley [Pays-Bas] ; H.-D. Shin [Corée du Sud] ; R. W. Barreto [Brésil] ; A. C. Alfenas [Brésil] ; W. J. Swart [Afrique du Sud] ; J. Z. Groenewald [Pays-Bas] ; P. W. Crous [Pays-Bas]Source :
- Studies in Mycology [ 0166-0616 ] ; 2013.
Abstract
Url:
DOI: 10.3114/sim0017
PubMed: 24014902
PubMed Central: 3713890
Affiliations:
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<author><name sortKey="Quaedvlieg, W" sort="Quaedvlieg, W" uniqKey="Quaedvlieg W" first="W." last="Quaedvlieg">W. Quaedvlieg</name>
<affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
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<affiliation wicri:level="1"><nlm:aff id="A2"> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands; Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands</nlm:aff>
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<author><name sortKey="Verkley, G J M" sort="Verkley, G J M" uniqKey="Verkley G" first="G. J. M." last="Verkley">G. J. M. Verkley</name>
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<author><name sortKey="Shin, H D" sort="Shin, H D" uniqKey="Shin H" first="H.-D." last="Shin">H.-D. Shin</name>
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<author><name sortKey="Barreto, R W" sort="Barreto, R W" uniqKey="Barreto R" first="R. W." last="Barreto">R. W. Barreto</name>
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<author><name sortKey="Alfenas, A C" sort="Alfenas, A C" uniqKey="Alfenas A" first="A. C." last="Alfenas">A. C. Alfenas</name>
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<author><name sortKey="Swart, W J" sort="Swart, W J" uniqKey="Swart W" first="W. J." last="Swart">W. J. Swart</name>
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<author><name sortKey="Groenewald, J Z" sort="Groenewald, J Z" uniqKey="Groenewald J" first="J. Z." last="Groenewald">J. Z. Groenewald</name>
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<author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Sizing up <italic>Septoria</italic>
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<author><name sortKey="Quaedvlieg, W" sort="Quaedvlieg, W" uniqKey="Quaedvlieg W" first="W." last="Quaedvlieg">W. Quaedvlieg</name>
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<author><name sortKey="Verkley, G J M" sort="Verkley, G J M" uniqKey="Verkley G" first="G. J. M." last="Verkley">G. J. M. Verkley</name>
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<author><name sortKey="Shin, H D" sort="Shin, H D" uniqKey="Shin H" first="H.-D." last="Shin">H.-D. Shin</name>
<affiliation wicri:level="1"><nlm:aff id="A3"> Utrecht University, Department of Biology, Microbiology, Padualaan 8, 3584 CH Utrecht, The Netherlands; Division of Environmental Science and Ecological Engineering, Korea University, Seoul 136-701, Korea</nlm:aff>
<country xml:lang="fr">Corée du Sud</country>
<wicri:regionArea> Utrecht University, Department of Biology, Microbiology, Padualaan 8, 3584 CH Utrecht, The Netherlands; Division of Environmental Science and Ecological Engineering, Korea University, Seoul 136-701</wicri:regionArea>
<placeName><settlement type="city">Séoul</settlement>
</placeName>
</affiliation>
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<author><name sortKey="Barreto, R W" sort="Barreto, R W" uniqKey="Barreto R" first="R. W." last="Barreto">R. W. Barreto</name>
<affiliation wicri:level="2"><nlm:aff id="A4"> Departamento de Fitopatologia, Universidade Federal de Viçosa, 36750 Viçosa, Minas Gerais, Brazil</nlm:aff>
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<author><name sortKey="Alfenas, A C" sort="Alfenas, A C" uniqKey="Alfenas A" first="A. C." last="Alfenas">A. C. Alfenas</name>
<affiliation wicri:level="2"><nlm:aff id="A4"> Departamento de Fitopatologia, Universidade Federal de Viçosa, 36750 Viçosa, Minas Gerais, Brazil</nlm:aff>
<country xml:lang="fr">Brésil</country>
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<author><name sortKey="Swart, W J" sort="Swart, W J" uniqKey="Swart W" first="W. J." last="Swart">W. J. Swart</name>
<affiliation wicri:level="1"><nlm:aff id="A5"> Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9300, South Africa</nlm:aff>
<country xml:lang="fr">Afrique du Sud</country>
<wicri:regionArea> Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9300</wicri:regionArea>
<wicri:noRegion>Bloemfontein 9300</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Groenewald, J Z" sort="Groenewald, J Z" uniqKey="Groenewald J" first="J. Z." last="Groenewald">J. Z. Groenewald</name>
<affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea>
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<author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name>
<affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
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<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands; Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht</wicri:regionArea>
<wicri:noRegion>3584 CH Utrecht</wicri:noRegion>
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<affiliation wicri:level="1"><nlm:aff id="A6"> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</nlm:aff>
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<series><title level="j">Studies in Mycology</title>
<idno type="ISSN">0166-0616</idno>
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<imprint><date when="2013">2013</date>
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<front><div type="abstract" xml:lang="en"><p id="P6"><italic>Septoria</italic>
represents a genus of plant pathogenic fungi with a wide geographic distribution, commonly associated with leaf spots and stem cankers of a broad range of plant hosts. A major aim of this study was to resolve the phylogenetic generic limits of <italic>Septoria, Stagonospora</italic>
, and other related genera such as <italic>Sphaerulina, Phaeosphaeria</italic>
and <italic>Phaeoseptoria</italic>
using sequences of the the partial 28S nuclear ribosomal RNA and RPB2 genes of a large set of isolates. Based on these results <italic>Septoria</italic>
is shown to be a distinct genus in the <italic>Mycosphaerellaceae</italic>
, which has mycosphaerella-like sexual morphs. Several septoria-like species are now accommodated in <italic>Sphaerulina</italic>
, a genus previously linked to this complex. <italic>Phaeosphaeria</italic>
(based on <italic>P. oryzae</italic>
) is shown to be congeneric with <italic>Phaeoseptoria</italic>
(based on <italic>P. papayae</italic>
), which is reduced to synonymy under the former. <italic>Depazea nodorum</italic>
(causal agent of nodorum blotch of cereals) and <italic>Septoria avenae</italic>
(causal agent of avenae blotch of barley and rye) are placed in a new genus, <italic>Parastagonospora</italic>
, which is shown to be distinct from <italic>Stagonospora</italic>
(based on <italic>S. paludosa</italic>
) and <italic>Phaeosphaeria</italic>
. Partial nucleotide sequence data for five gene loci, ITS, LSU, EF-1α, RPB2 and Btub were generated for all of these isolates. A total of 47 clades or genera were resolved, leading to the introduction of 14 new genera, 36 new species, and 19 new combinations.</p>
<sec id="S1"><title>Taxonomic novelties:</title>
<p id="P7"><bold>New genera -</bold>
<italic>Acicuseptoria</italic>
Quaedvlieg, Verkley & Crous, <italic>Cylindroseptoria</italic>
Quaedvlieg, Verkley & Crous, <italic>Kirstenboschia</italic>
Quaedvlieg, Verkley & Crous, <italic>Neoseptoria</italic>
Quaedvlieg, Verkley & Crous, <italic>Neostagonospora</italic>
Quaedvlieg, Verkley & Crous, <italic>Parastagonospora</italic>
Quaedvlieg, Verkley & Crous, <italic>Polyphialoseptoria</italic>
Quaedvlieg, R.W. Barreto, Verkley & Crous, <italic>Ruptoseptoria</italic>
Quaedvlieg, Verkley & Crous, <italic>Septorioides</italic>
Quaedvlieg, Verkley & Crous, <italic>Setoseptoria</italic>
Quaedvlieg, Verkley & Crous, <italic>Stromatoseptoria</italic>
Quaedvlieg, Verkley & Crous, <italic>Vrystaatia</italic>
Quaedvlieg, W.J. Swart, Verkley & Crous, <italic>Xenobotryosphaeria</italic>
Quaedvlieg, Verkley & Crous, <italic>Xenoseptoria</italic>
Quaedvlieg, H.D. Shin, Verkley & Crous. <bold>New species -</bold>
<italic>Acicuseptoria rumicis</italic>
Quaedvlieg, Verkley & Crous, <italic>Caryophylloseptoria pseudolychnidis</italic>
Quaedvlieg, H.D. Shin, Verkley & Crous, <italic>Coniothyrium sidae</italic>
Quaedvlieg, Verkley, R.W. Barreto & Crous, <italic>Corynespora leucadendri</italic>
Quaedvlieg, Verkley & Crous, <italic>Cylindroseptoria ceratoniae</italic>
Quaedvlieg, Verkley & Crous, <italic>Cylindroseptoria pistaciae</italic>
Quaedvlieg, Verkley & Crous, <italic>Kirstenboschia diospyri</italic>
Quaedvlieg, Verkley & Crous, <italic>Neoseptoria caricis</italic>
Quaedvlieg, Verkley & Crous, <italic>Neostagonospora caricis</italic>
Quaedvlieg, Verkley & Crous, <italic>Neostagonospora elegiae</italic>
Quaedvlieg, Verkley & Crous, <italic>Paraphoma dioscoreae</italic>
Quaedvlieg, H.D. Shin, Verkley & Crous, <italic>Parastagonospora caricis</italic>
Quaedvlieg, Verkley & Crous, <italic>Parastagonospora poae</italic>
Quaedvlieg, Verkley & Crous, <italic>Phlyctema vincetoxici</italic>
Quaedvlieg, Verkley & Crous, <italic>Polyphialoseptoria tabebuiae-serratifoliae</italic>
Quaedvlieg, Alfenas & Crous, <italic>Polyphialoseptoria terminaliae</italic>
Quaedvlieg, R.W. Barreto, Verkley & Crous, <italic>Pseudoseptoria collariana</italic>
Quaedvlieg, Verkley & Crous, <italic>Pseudoseptoria obscura</italic>
Quaedvlieg, Verkley & Crous, <italic>Sclerostagonospora phragmiticola</italic>
Quaedvlieg, Verkley & Crous, <italic>Septoria cretae</italic>
Quaedvlieg, Verkley & Crous, <italic>Septoria glycinicola</italic>
Quaedvlieg, H.D. Shin, Verkley & Crous, <italic>Septoria oenanthicola</italic>
Quaedvlieg, H.D. Shin, Verkley & Crous, <italic>Septoria pseudonapelli</italic>
Quaedvlieg, H.D. Shin, Verkley & Crous, <italic>Setophoma chromolaenae</italic>
Quaedvlieg, Verkley, R.W. Barreto & Crous, <italic>Setoseptoria phragmitis</italic>
Quaedvlieg, Verkley & Crous, <italic>Sphaerulina amelanchier</italic>
Quaedvlieg, Verkley & Crous, <italic>Sphaerulina pseudovirgaureae</italic>
Quaedvlieg, Verkley & Crous, <italic>Sphaerulina viciae</italic>
Quaedvlieg, H.D. Shin, Verkley & Crous, <italic>Stagonospora duoseptata</italic>
Quaedvlieg, Verkley & Crous, <italic>Stagonospora perfecta</italic>
Quaedvlieg, Verkley & Crous, <italic>Stagonospora pseudocaricis</italic>
Quaedvlieg, Verkley, Gardiennet & Crous, <italic>Stagonospora pseudovitensis</italic>
Quaedvlieg, Verkley & Crous, <italic>Stagonospora uniseptata</italic>
Quaedvlieg, Verkley & Crous, <italic>Vrystaatia aloeicola</italic>
Quaedvlieg, Verkley, W.J. Swart & Crous, <italic>Xenobotryosphaeria calamagrostidis</italic>
Quaedvlieg, Verkley & Crous, <italic>Xenoseptoria neosaccardoi</italic>
Quaedvlieg, H.D. Shin, Verkley & Crous. <bold>New combinations -</bold>
<italic>Parastagonospora avenae</italic>
(A.B. Frank) Quaedvlieg, Verkley & Crous, <italic>Parastagonospora nodorum</italic>
(Berk.) Quaedvlieg, Verkley & Crous, <italic>Phaeosphaeria papayae</italic>
(Speg.) Quaedvlieg, Verkley & Crous, <italic>Pseudocercospora domingensis</italic>
(Petr. & Cif.) Quaedvlieg, Verkley & Crous, <italic>Ruptoseptoria unedonis</italic>
(Roberge ex Desm.) Quaedvlieg, Verkley & Crous, <italic>Septorioides pini-thunbergii</italic>
(S. Kaneko) Quaedvlieg, Verkley & Crous, <italic>Sphaerulina abeliceae</italic>
(Hiray.) Quaedvlieg, Verkley & Crous, <italic>Sphaerulina azaleae</italic>
(Voglino) Quaedvlieg, Verkley & Crous, <italic>Sphaerulina berberidis</italic>
(Niessl) Quaedvlieg, Verkley & Crous, <italic>Sphaerulina betulae</italic>
(Pass.) Quaedvlieg, Verkley & Crous, <italic>Sphaerulina cercidis</italic>
(Fr.) Quaedvlieg, Verkley & Crous, <italic>Sphaerulina menispermi</italic>
(Thüm.) Quaedvlieg, Verkley & Crous, <italic>Sphaerulina musiva</italic>
(Peck) Quaedvlieg, Verkley & Crous, <italic>Sphaerulina oxyacanthae</italic>
(Kunze & J.C. Schmidt) Quaedvlieg, Verkley & Crous, <italic>Sphaerulina patriniae</italic>
(Miura) Quaedvlieg, Verkley & Crous, <italic>Sphaerulina populicola</italic>
(Peck) Quaedvlieg, Verkley & Crous, <italic>Sphaerulina quercicola</italic>
(Desm.) Quaedvlieg, Verkley & Crous, <italic>Sphaerulina rhabdoclinis</italic>
(Butin) Quaedvlieg, Verkley & Crous, <italic>Stromatoseptoria castaneicola</italic>
(Desm.) Quaedvlieg, Verkley & Crous. <bold>Typifications: Epitypifications -</bold>
<italic>Phaeosphaeria oryzae</italic>
I. Miyake, <italic>Phaeoseptoria papayae</italic>
Speg.; <bold>Neotypification -</bold>
<italic>Hendersonia paludosa</italic>
Sacc. & Speg.</p>
</sec>
</div>
</front>
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