De Novo Transcriptome Assembly (NGS) of Curcuma longa L. Rhizome Reveals Novel Transcripts Related to Anticancer and Antimalarial Terpenoids
Identifieur interne : 001235 ( Ncbi/Checkpoint ); précédent : 001234; suivant : 001236De Novo Transcriptome Assembly (NGS) of Curcuma longa L. Rhizome Reveals Novel Transcripts Related to Anticancer and Antimalarial Terpenoids
Auteurs : Ramasamy S. Annadurai ; Ramprasad Neethiraj ; Vasanthan Jayakumar ; Anand C. Damodaran ; Sudha Narayana Rao ; Mohan A. V. S. K. Katta ; Sreeja Gopinathan ; Santosh Prasad Sarma ; Vanitha Senthilkumar ; Vidya Niranjan ; Ashok Gopinath ; Raja C. MugasimangalamSource :
- PLoS ONE [ 1932-6203 ] ; 2013.
Abstract
Herbal remedies are increasingly being recognised in recent years as alternative medicine for a number of diseases including cancer.
Url:
DOI: 10.1371/journal.pone.0056217
PubMed: 23468859
PubMed Central: 3585318
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en"><italic>De Novo</italic> Transcriptome Assembly (NGS) of <italic>Curcuma longa</italic> L. Rhizome Reveals Novel Transcripts Related to Anticancer and Antimalarial Terpenoids</title><author><name sortKey="Annadurai, Ramasamy S" sort="Annadurai, Ramasamy S" uniqKey="Annadurai R" first="Ramasamy S." last="Annadurai">Ramasamy S. Annadurai</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Neethiraj, Ramprasad" sort="Neethiraj, Ramprasad" uniqKey="Neethiraj R" first="Ramprasad" last="Neethiraj">Ramprasad Neethiraj</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Jayakumar, Vasanthan" sort="Jayakumar, Vasanthan" uniqKey="Jayakumar V" first="Vasanthan" last="Jayakumar">Vasanthan Jayakumar</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Damodaran, Anand C" sort="Damodaran, Anand C" uniqKey="Damodaran A" first="Anand C." last="Damodaran">Anand C. Damodaran</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Rao, Sudha Narayana" sort="Rao, Sudha Narayana" uniqKey="Rao S" first="Sudha Narayana" last="Rao">Sudha Narayana Rao</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Katta, Mohan A V S K" sort="Katta, Mohan A V S K" uniqKey="Katta M" first="Mohan A. V. S. K." last="Katta">Mohan A. V. S. K. Katta</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Gopinathan, Sreeja" sort="Gopinathan, Sreeja" uniqKey="Gopinathan S" first="Sreeja" last="Gopinathan">Sreeja Gopinathan</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Sarma, Santosh Prasad" sort="Sarma, Santosh Prasad" uniqKey="Sarma S" first="Santosh Prasad" last="Sarma">Santosh Prasad Sarma</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Senthilkumar, Vanitha" sort="Senthilkumar, Vanitha" uniqKey="Senthilkumar V" first="Vanitha" last="Senthilkumar">Vanitha Senthilkumar</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Niranjan, Vidya" sort="Niranjan, Vidya" uniqKey="Niranjan V" first="Vidya" last="Niranjan">Vidya Niranjan</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Gopinath, Ashok" sort="Gopinath, Ashok" uniqKey="Gopinath A" first="Ashok" last="Gopinath">Ashok Gopinath</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Mugasimangalam, Raja C" sort="Mugasimangalam, Raja C" uniqKey="Mugasimangalam R" first="Raja C." last="Mugasimangalam">Raja C. Mugasimangalam</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">23468859</idno><idno type="pmc">3585318</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3585318</idno><idno type="RBID">PMC:3585318</idno><idno type="doi">10.1371/journal.pone.0056217</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">001135</idno><idno type="wicri:Area/Pmc/Curation">001134</idno><idno type="wicri:Area/Pmc/Checkpoint">000B84</idno><idno type="wicri:Area/Ncbi/Merge">001235</idno><idno type="wicri:Area/Ncbi/Curation">001235</idno><idno type="wicri:Area/Ncbi/Checkpoint">001235</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main"><italic>De Novo</italic> Transcriptome Assembly (NGS) of <italic>Curcuma longa</italic> L. Rhizome Reveals Novel Transcripts Related to Anticancer and Antimalarial Terpenoids</title><author><name sortKey="Annadurai, Ramasamy S" sort="Annadurai, Ramasamy S" uniqKey="Annadurai R" first="Ramasamy S." last="Annadurai">Ramasamy S. Annadurai</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Neethiraj, Ramprasad" sort="Neethiraj, Ramprasad" uniqKey="Neethiraj R" first="Ramprasad" last="Neethiraj">Ramprasad Neethiraj</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Jayakumar, Vasanthan" sort="Jayakumar, Vasanthan" uniqKey="Jayakumar V" first="Vasanthan" last="Jayakumar">Vasanthan Jayakumar</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Damodaran, Anand C" sort="Damodaran, Anand C" uniqKey="Damodaran A" first="Anand C." last="Damodaran">Anand C. Damodaran</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Rao, Sudha Narayana" sort="Rao, Sudha Narayana" uniqKey="Rao S" first="Sudha Narayana" last="Rao">Sudha Narayana Rao</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Katta, Mohan A V S K" sort="Katta, Mohan A V S K" uniqKey="Katta M" first="Mohan A. V. S. K." last="Katta">Mohan A. V. S. K. Katta</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Gopinathan, Sreeja" sort="Gopinathan, Sreeja" uniqKey="Gopinathan S" first="Sreeja" last="Gopinathan">Sreeja Gopinathan</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Sarma, Santosh Prasad" sort="Sarma, Santosh Prasad" uniqKey="Sarma S" first="Santosh Prasad" last="Sarma">Santosh Prasad Sarma</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Senthilkumar, Vanitha" sort="Senthilkumar, Vanitha" uniqKey="Senthilkumar V" first="Vanitha" last="Senthilkumar">Vanitha Senthilkumar</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Niranjan, Vidya" sort="Niranjan, Vidya" uniqKey="Niranjan V" first="Vidya" last="Niranjan">Vidya Niranjan</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Gopinath, Ashok" sort="Gopinath, Ashok" uniqKey="Gopinath A" first="Ashok" last="Gopinath">Ashok Gopinath</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Mugasimangalam, Raja C" sort="Mugasimangalam, Raja C" uniqKey="Mugasimangalam R" first="Raja C." last="Mugasimangalam">Raja C. Mugasimangalam</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Herbal remedies are increasingly being recognised in recent years as alternative medicine for a number of diseases including cancer. <italic>Curcuma longa</italic> L., commonly known as turmeric is used as a culinary spice in India and in many Asian countries has been attributed to lower incidences of gastrointestinal cancers. Curcumin, a secondary metabolite isolated from the rhizomes of this plant has been shown to have significant anticancer properties, in addition to antimalarial and antioxidant effects. We sequenced the transcriptome of the rhizome of the 3 varieties of <italic>Curcuma longa</italic> L. using Illumina reversible dye terminator sequencing followed by <italic>de novo</italic> transcriptome assembly. Multiple databases were used to obtain a comprehensive annotation and the transcripts were functionally classified using GO, KOG and PlantCyc. Special emphasis was given for annotating the secondary metabolite pathways and terpenoid biosynthesis pathways. We report for the first time, the presence of transcripts related to biosynthetic pathways of several anti-cancer compounds like taxol, curcumin, and vinblastine in addition to anti-malarial compounds like artemisinin and acridone alkaloids, emphasizing turmeric's importance as a highly potent phytochemical. Our data not only provides molecular signatures for several terpenoids but also a comprehensive molecular resource for facilitating deeper insights into the transcriptome of <italic>C. longa</italic>.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Nandakumar, Dn" uniqKey="Nandakumar D">DN Nandakumar</name></author><author><name sortKey="Nagaraj, Va" uniqKey="Nagaraj V">VA Nagaraj</name></author><author><name sortKey="Vathsala, Pg" uniqKey="Vathsala P">PG Vathsala</name></author><author><name sortKey="Rangarajan, P" uniqKey="Rangarajan P">P Rangarajan</name></author><author><name sortKey="Padmanaban, G" uniqKey="Padmanaban G">G Padmanaban</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Gupta, Sc" uniqKey="Gupta S">SC Gupta</name></author><author><name sortKey="Patchva, S" uniqKey="Patchva S">S Patchva</name></author><author><name sortKey="Koh, W" uniqKey="Koh W">W 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Salzberg</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Li, H" uniqKey="Li H">H Li</name></author><author><name sortKey="Handsaker, B" uniqKey="Handsaker B">B Handsaker</name></author><author><name sortKey="Wysoker, A" uniqKey="Wysoker A">A Wysoker</name></author><author><name sortKey="Fennell, T" uniqKey="Fennell T">T Fennell</name></author><author><name sortKey="Ruan, J" uniqKey="Ruan J">J Ruan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Anders, S" uniqKey="Anders S">S Anders</name></author><author><name sortKey="Huber, W" uniqKey="Huber W">W Huber</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list></list><tree><noCountry><name sortKey="Annadurai, Ramasamy S" sort="Annadurai, Ramasamy S" uniqKey="Annadurai R" first="Ramasamy S." last="Annadurai">Ramasamy S. Annadurai</name><name sortKey="Damodaran, Anand C" sort="Damodaran, Anand C" uniqKey="Damodaran A" first="Anand C." last="Damodaran">Anand C. Damodaran</name><name sortKey="Gopinath, Ashok" sort="Gopinath, Ashok" uniqKey="Gopinath A" first="Ashok" last="Gopinath">Ashok Gopinath</name><name sortKey="Gopinathan, Sreeja" sort="Gopinathan, Sreeja" uniqKey="Gopinathan S" first="Sreeja" last="Gopinathan">Sreeja Gopinathan</name><name sortKey="Jayakumar, Vasanthan" sort="Jayakumar, Vasanthan" uniqKey="Jayakumar V" first="Vasanthan" last="Jayakumar">Vasanthan Jayakumar</name><name sortKey="Katta, Mohan A V S K" sort="Katta, Mohan A V S K" uniqKey="Katta M" first="Mohan A. V. S. K." last="Katta">Mohan A. V. S. K. Katta</name><name sortKey="Mugasimangalam, Raja C" sort="Mugasimangalam, Raja C" uniqKey="Mugasimangalam R" first="Raja C." last="Mugasimangalam">Raja C. Mugasimangalam</name><name sortKey="Neethiraj, Ramprasad" sort="Neethiraj, Ramprasad" uniqKey="Neethiraj R" first="Ramprasad" last="Neethiraj">Ramprasad Neethiraj</name><name sortKey="Niranjan, Vidya" sort="Niranjan, Vidya" uniqKey="Niranjan V" first="Vidya" last="Niranjan">Vidya Niranjan</name><name sortKey="Rao, Sudha Narayana" sort="Rao, Sudha Narayana" uniqKey="Rao S" first="Sudha Narayana" last="Rao">Sudha Narayana Rao</name><name sortKey="Sarma, Santosh Prasad" sort="Sarma, Santosh Prasad" uniqKey="Sarma S" first="Santosh Prasad" last="Sarma">Santosh Prasad Sarma</name><name sortKey="Senthilkumar, Vanitha" sort="Senthilkumar, Vanitha" uniqKey="Senthilkumar V" first="Vanitha" last="Senthilkumar">Vanitha Senthilkumar</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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