Analysis of beta-carotene hydroxylase gene cDNA isolated from the American oil-palm (Elaeis oleifera) mesocarp tissue cDNA library
Identifieur interne : 001B48 ( Main/Merge ); précédent : 001B47; suivant : 001B49Analysis of beta-carotene hydroxylase gene cDNA isolated from the American oil-palm (Elaeis oleifera) mesocarp tissue cDNA library
Auteurs : Subhash J. Bhore [Malaisie] ; Amelia Kassim [Malaisie] ; Chye Ying Loh [Malaisie] ; Farida H. Shah [Malaisie]Source :
- Bioinformation [ 0973-2063 ] ; 2010.
Abstract
It is well known that the nutritional quality of the American oil-palm (
ESTs - expressed sequence tags,
Url:
PubMed: 21364789
PubMed Central: 3040485
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Analysis of beta-carotene hydroxylase gene cDNA isolated from the American oil-palm (Elaeis oleifera) mesocarp tissue cDNA library</title><author><name sortKey="Bhore, Subhash J" sort="Bhore, Subhash J" uniqKey="Bhore S" first="Subhash J" last="Bhore">Subhash J. Bhore</name><affiliation wicri:level="1"><nlm:aff id="A1">1Molecular Biology Division, Melaka Institute of Biotechnology, Lot 7, Melaka International Trade Centre City, 75450 Ayer Keroh, Melaka, Malaysia;</nlm:aff><country xml:lang="fr">Malaisie</country><wicri:regionArea>1Molecular Biology Division, Melaka Institute of Biotechnology, Lot 7, Melaka International Trade Centre City, 75450 Ayer Keroh, Melaka</wicri:regionArea><wicri:noRegion>Melaka</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A2">Department of Biotechnology, Faculty of Applied Sciences, AIMST University, Bedong-Semeling Road, Bedong, 08100, Kedah Darul Aman, Malaysia;</nlm:aff><country xml:lang="fr">Malaisie</country><wicri:regionArea>Department of Biotechnology, Faculty of Applied Sciences, AIMST University, Bedong-Semeling Road, Bedong, 08100, Kedah Darul Aman</wicri:regionArea><wicri:noRegion>Kedah Darul Aman</wicri:noRegion></affiliation></author><author><name sortKey="Kassim, Amelia" sort="Kassim, Amelia" uniqKey="Kassim A" first="Amelia" last="Kassim">Amelia Kassim</name><affiliation wicri:level="1"><nlm:aff id="A1">1Molecular Biology Division, Melaka Institute of Biotechnology, Lot 7, Melaka International Trade Centre City, 75450 Ayer Keroh, Melaka, Malaysia;</nlm:aff><country xml:lang="fr">Malaisie</country><wicri:regionArea>1Molecular Biology Division, Melaka Institute of Biotechnology, Lot 7, Melaka International Trade Centre City, 75450 Ayer Keroh, Melaka</wicri:regionArea><wicri:noRegion>Melaka</wicri:noRegion></affiliation></author><author><name sortKey="Loh, Chye Ying" sort="Loh, Chye Ying" uniqKey="Loh C" first="Chye Ying" last="Loh">Chye Ying Loh</name><affiliation wicri:level="1"><nlm:aff id="A2">Department of Biotechnology, Faculty of Applied Sciences, AIMST University, Bedong-Semeling Road, Bedong, 08100, Kedah Darul Aman, Malaysia;</nlm:aff><country xml:lang="fr">Malaisie</country><wicri:regionArea>Department of Biotechnology, Faculty of Applied Sciences, AIMST University, Bedong-Semeling Road, Bedong, 08100, Kedah Darul Aman</wicri:regionArea><wicri:noRegion>Kedah Darul Aman</wicri:noRegion></affiliation></author><author><name sortKey="Shah, Farida H" sort="Shah, Farida H" uniqKey="Shah F" first="Farida H" last="Shah">Farida H. Shah</name><affiliation wicri:level="1"><nlm:aff id="A1">1Molecular Biology Division, Melaka Institute of Biotechnology, Lot 7, Melaka International Trade Centre City, 75450 Ayer Keroh, Melaka, Malaysia;</nlm:aff><country xml:lang="fr">Malaisie</country><wicri:regionArea>1Molecular Biology Division, Melaka Institute of Biotechnology, Lot 7, Melaka International Trade Centre City, 75450 Ayer Keroh, Melaka</wicri:regionArea><wicri:noRegion>Melaka</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">21364789</idno><idno type="pmc">3040485</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3040485</idno><idno type="RBID">PMC:3040485</idno><date when="2010">2010</date><idno type="wicri:Area/Pmc/Corpus">000E41</idno><idno type="wicri:Area/Pmc/Curation">000E40</idno><idno type="wicri:Area/Pmc/Checkpoint">000F75</idno><idno type="wicri:Area/Ncbi/Merge">000D04</idno><idno type="wicri:Area/Ncbi/Curation">000D04</idno><idno type="wicri:Area/Ncbi/Checkpoint">000D04</idno><idno type="wicri:Area/Main/Merge">001B48</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Analysis of beta-carotene hydroxylase gene cDNA isolated from the American oil-palm (Elaeis oleifera) mesocarp tissue cDNA library</title><author><name sortKey="Bhore, Subhash J" sort="Bhore, Subhash J" uniqKey="Bhore S" first="Subhash J" last="Bhore">Subhash J. Bhore</name><affiliation wicri:level="1"><nlm:aff id="A1">1Molecular Biology Division, Melaka Institute of Biotechnology, Lot 7, Melaka International Trade Centre City, 75450 Ayer Keroh, Melaka, Malaysia;</nlm:aff><country xml:lang="fr">Malaisie</country><wicri:regionArea>1Molecular Biology Division, Melaka Institute of Biotechnology, Lot 7, Melaka International Trade Centre City, 75450 Ayer Keroh, Melaka</wicri:regionArea><wicri:noRegion>Melaka</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A2">Department of Biotechnology, Faculty of Applied Sciences, AIMST University, Bedong-Semeling Road, Bedong, 08100, Kedah Darul Aman, Malaysia;</nlm:aff><country xml:lang="fr">Malaisie</country><wicri:regionArea>Department of Biotechnology, Faculty of Applied Sciences, AIMST University, Bedong-Semeling Road, Bedong, 08100, Kedah Darul Aman</wicri:regionArea><wicri:noRegion>Kedah Darul Aman</wicri:noRegion></affiliation></author><author><name sortKey="Kassim, Amelia" sort="Kassim, Amelia" uniqKey="Kassim A" first="Amelia" last="Kassim">Amelia Kassim</name><affiliation wicri:level="1"><nlm:aff id="A1">1Molecular Biology Division, Melaka Institute of Biotechnology, Lot 7, Melaka International Trade Centre City, 75450 Ayer Keroh, Melaka, Malaysia;</nlm:aff><country xml:lang="fr">Malaisie</country><wicri:regionArea>1Molecular Biology Division, Melaka Institute of Biotechnology, Lot 7, Melaka International Trade Centre City, 75450 Ayer Keroh, Melaka</wicri:regionArea><wicri:noRegion>Melaka</wicri:noRegion></affiliation></author><author><name sortKey="Loh, Chye Ying" sort="Loh, Chye Ying" uniqKey="Loh C" first="Chye Ying" last="Loh">Chye Ying Loh</name><affiliation wicri:level="1"><nlm:aff id="A2">Department of Biotechnology, Faculty of Applied Sciences, AIMST University, Bedong-Semeling Road, Bedong, 08100, Kedah Darul Aman, Malaysia;</nlm:aff><country xml:lang="fr">Malaisie</country><wicri:regionArea>Department of Biotechnology, Faculty of Applied Sciences, AIMST University, Bedong-Semeling Road, Bedong, 08100, Kedah Darul Aman</wicri:regionArea><wicri:noRegion>Kedah Darul Aman</wicri:noRegion></affiliation></author><author><name sortKey="Shah, Farida H" sort="Shah, Farida H" uniqKey="Shah F" first="Farida H" last="Shah">Farida H. Shah</name><affiliation wicri:level="1"><nlm:aff id="A1">1Molecular Biology Division, Melaka Institute of Biotechnology, Lot 7, Melaka International Trade Centre City, 75450 Ayer Keroh, Melaka, Malaysia;</nlm:aff><country xml:lang="fr">Malaisie</country><wicri:regionArea>1Molecular Biology Division, Melaka Institute of Biotechnology, Lot 7, Melaka International Trade Centre City, 75450 Ayer Keroh, Melaka</wicri:regionArea><wicri:noRegion>Melaka</wicri:noRegion></affiliation></author></analytic><series><title level="j">Bioinformation</title><idno type="eISSN">0973-2063</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>It is well known that the nutritional quality of the American oil-palm (<italic>Elaeis oleifera</italic>) mesocarp oil is superior to that of African oil-palm (<italic>Elaeis
guineensis</italic> Jacq. Tenera) mesocarp oil. Therefore, it is of important to identify the genetic features for its superior value. This could be achieved through
the genome sequencing of the oil-palm. However, the genome sequence is not available in the public domain due to commercial secrecy. Hence, we
constructed a cDNA library and generated expressed sequence tags (3,205) from the mesocarp tissue of the American oil-palm. We continued to annotate
each of these cDNAs after submitting to GenBank/DDBJ/EMBL. A rough analysis turned our attention to the beta-carotene hydroxylase (<italic>Chyb</italic>) enzyme
encoding cDNA. Then, we completed the full sequencing of cDNA clone for its both strands using M13 forward and reverse primers. The full nucleotide
and protein sequence was further analyzed and annotated using various Bioinformatics tools. The analysis results showed the presence of fatty acid
hydroxylase superfamily domain in the protein sequence. The multiple sequence alignment of selected <italic>Chyb</italic> amino acid sequences from other plant
species and algal members with <italic>E. oleifera Chyb</italic> using ClustalW and its phylogenetic analysis suggest that <italic>Chyb</italic> from monocotyledonous plant species,
<italic>Lilium hubrid</italic>, <italic>Crocus sativus</italic> and <italic>Zea mays</italic> are the most evolutionary related with <italic>E. oleifera Chyb</italic>. This study reports the annotation of <italic>E. oleifera Chyb</italic>.</p><sec id="ABB"><title>Abbreviations</title><p>ESTs - expressed sequence tags,
<italic>EoChyb</italic> - <italic>Elaeis oleifera beta-carotene hydroxylase</italic>,
MC - main cluster</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Muniran, F" uniqKey="Muniran F">F Muniran</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Asemota, O" uniqKey="Asemota O">O Asemota</name></author><author><name sortKey="Shah, Fh" uniqKey="Shah F">FH Shah</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lange, Bm" uniqKey="Lange B">BM Lange</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ohlrogge, J" uniqKey="Ohlrogge J">J Ohlrogge</name></author><author><name sortKey="Benning, C" uniqKey="Benning C">C Benning</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ronning, Cm" uniqKey="Ronning C">CM Ronning</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sreenivasulu, N" uniqKey="Sreenivasulu N">N Sreenivasulu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Liu, J" uniqKey="Liu J">J Liu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Keith, Cs" uniqKey="Keith C">CS Keith</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Park, Ys" uniqKey="Park Y">YS Park</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hofte, H" uniqKey="Hofte H">H Hofte</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Umeda, M" uniqKey="Umeda M">M Umeda</name></author><author><name sortKey="Uchimiya, H" uniqKey="Uchimiya H">H Uchimiya</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Marchler Bauer, A" uniqKey="Marchler Bauer A">A Marchler-Bauer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Martin, Jf" uniqKey="Martin J">JF Martin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Baroli, I" uniqKey="Baroli I">I Baroli</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vallabhaneni, R" uniqKey="Vallabhaneni R">R Vallabhaneni</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Shah, Fh" uniqKey="Shah F">FH Shah</name></author><author><name sortKey="Cha, Ts" uniqKey="Cha T">TS Cha</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Singh, R" uniqKey="Singh R">R Singh</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Arthington, Ba" uniqKey="Arthington B">BA Arthington</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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