Comparative transcript profiling of the fertile and sterile flower buds of pol CMS in B. napus
Identifieur interne : 000B58 ( Main/Merge ); précédent : 000B57; suivant : 000B59Comparative transcript profiling of the fertile and sterile flower buds of pol CMS in B. napus
Auteurs : Hong An [République populaire de Chine] ; Zonghui Yang [République populaire de Chine] ; Bin Yi [République populaire de Chine] ; Jing Wen [République populaire de Chine] ; Jinxiong Shen [République populaire de Chine] ; Jinxing Tu [République populaire de Chine] ; Chaozhi Ma [République populaire de Chine] ; Tingdong Fu [République populaire de Chine]Source :
- BMC Genomics [ 1471-2164 ] ; 2014.
Abstract
The Polima (
To investigate the transcriptome during the male sterility transition in
These results suggested that an energy deficiency caused by
Url:
DOI: 10.1186/1471-2164-15-258
PubMed: 24707970
PubMed Central: 4051170
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Comparative transcript profiling of the fertile and sterile flower buds of <italic>pol</italic> CMS in <italic>B. napus</italic></title><author><name sortKey="An, Hong" sort="An, Hong" uniqKey="An H" first="Hong" last="An">Hong An</name><affiliation wicri:level="1"><nlm:aff id="I1">National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea><wicri:noRegion>Wuhan 430070</wicri:noRegion></affiliation></author><author><name sortKey="Yang, Zonghui" sort="Yang, Zonghui" uniqKey="Yang Z" first="Zonghui" last="Yang">Zonghui Yang</name><affiliation wicri:level="1"><nlm:aff id="I1">National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea><wicri:noRegion>Wuhan 430070</wicri:noRegion></affiliation></author><author><name sortKey="Yi, Bin" sort="Yi, Bin" uniqKey="Yi B" first="Bin" last="Yi">Bin Yi</name><affiliation wicri:level="1"><nlm:aff id="I1">National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea><wicri:noRegion>Wuhan 430070</wicri:noRegion></affiliation></author><author><name sortKey="Wen, Jing" sort="Wen, Jing" uniqKey="Wen J" first="Jing" last="Wen">Jing Wen</name><affiliation wicri:level="1"><nlm:aff id="I1">National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea><wicri:noRegion>Wuhan 430070</wicri:noRegion></affiliation></author><author><name sortKey="Shen, Jinxiong" sort="Shen, Jinxiong" uniqKey="Shen J" first="Jinxiong" last="Shen">Jinxiong Shen</name><affiliation wicri:level="1"><nlm:aff id="I1">National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea><wicri:noRegion>Wuhan 430070</wicri:noRegion></affiliation></author><author><name sortKey="Tu, Jinxing" sort="Tu, Jinxing" uniqKey="Tu J" first="Jinxing" last="Tu">Jinxing Tu</name><affiliation wicri:level="1"><nlm:aff id="I1">National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea><wicri:noRegion>Wuhan 430070</wicri:noRegion></affiliation></author><author><name sortKey="Ma, Chaozhi" sort="Ma, Chaozhi" uniqKey="Ma C" first="Chaozhi" last="Ma">Chaozhi Ma</name><affiliation wicri:level="1"><nlm:aff id="I1">National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea><wicri:noRegion>Wuhan 430070</wicri:noRegion></affiliation></author><author><name sortKey="Fu, Tingdong" sort="Fu, Tingdong" uniqKey="Fu T" first="Tingdong" last="Fu">Tingdong Fu</name><affiliation wicri:level="1"><nlm:aff id="I1">National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea><wicri:noRegion>Wuhan 430070</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">24707970</idno><idno type="pmc">4051170</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4051170</idno><idno type="RBID">PMC:4051170</idno><idno type="doi">10.1186/1471-2164-15-258</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">000B27</idno><idno type="wicri:Area/Pmc/Curation">000B26</idno><idno type="wicri:Area/Pmc/Checkpoint">000874</idno><idno type="wicri:Area/Ncbi/Merge">001657</idno><idno type="wicri:Area/Ncbi/Curation">001657</idno><idno type="wicri:Area/Ncbi/Checkpoint">001657</idno><idno type="wicri:Area/Main/Merge">000B58</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Comparative transcript profiling of the fertile and sterile flower buds of <italic>pol</italic> CMS in <italic>B. napus</italic></title><author><name sortKey="An, Hong" sort="An, Hong" uniqKey="An H" first="Hong" last="An">Hong An</name><affiliation wicri:level="1"><nlm:aff id="I1">National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea><wicri:noRegion>Wuhan 430070</wicri:noRegion></affiliation></author><author><name sortKey="Yang, Zonghui" sort="Yang, Zonghui" uniqKey="Yang Z" first="Zonghui" last="Yang">Zonghui Yang</name><affiliation wicri:level="1"><nlm:aff id="I1">National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea><wicri:noRegion>Wuhan 430070</wicri:noRegion></affiliation></author><author><name sortKey="Yi, Bin" sort="Yi, Bin" uniqKey="Yi B" first="Bin" last="Yi">Bin Yi</name><affiliation wicri:level="1"><nlm:aff id="I1">National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea><wicri:noRegion>Wuhan 430070</wicri:noRegion></affiliation></author><author><name sortKey="Wen, Jing" sort="Wen, Jing" uniqKey="Wen J" first="Jing" last="Wen">Jing Wen</name><affiliation wicri:level="1"><nlm:aff id="I1">National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea><wicri:noRegion>Wuhan 430070</wicri:noRegion></affiliation></author><author><name sortKey="Shen, Jinxiong" sort="Shen, Jinxiong" uniqKey="Shen J" first="Jinxiong" last="Shen">Jinxiong Shen</name><affiliation wicri:level="1"><nlm:aff id="I1">National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea><wicri:noRegion>Wuhan 430070</wicri:noRegion></affiliation></author><author><name sortKey="Tu, Jinxing" sort="Tu, Jinxing" uniqKey="Tu J" first="Jinxing" last="Tu">Jinxing Tu</name><affiliation wicri:level="1"><nlm:aff id="I1">National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea><wicri:noRegion>Wuhan 430070</wicri:noRegion></affiliation></author><author><name sortKey="Ma, Chaozhi" sort="Ma, Chaozhi" uniqKey="Ma C" first="Chaozhi" last="Ma">Chaozhi Ma</name><affiliation wicri:level="1"><nlm:aff id="I1">National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea><wicri:noRegion>Wuhan 430070</wicri:noRegion></affiliation></author><author><name sortKey="Fu, Tingdong" sort="Fu, Tingdong" uniqKey="Fu T" first="Tingdong" last="Fu">Tingdong Fu</name><affiliation wicri:level="1"><nlm:aff id="I1">National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, P. R. China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Key Lab of Crop Geneticc Improvement, National Center of Crop Molecular Breeding Technology, National Center of Oil Crop Improvement (Wuhan), College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070</wicri:regionArea><wicri:noRegion>Wuhan 430070</wicri:noRegion></affiliation></author></analytic><series><title level="j">BMC Genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>The Polima (<italic>pol</italic>) system of cytoplasmic male sterility (CMS) and its fertility restoration gene <italic>Rfp</italic> have been used in hybrid breeding in <italic>Brassica napus</italic>, which has greatly improved the yield of rapeseed. However, the mechanism of the male sterility transition in <italic>pol</italic> CMS remains to be determined.</p></sec><sec><title>Results</title><p>To investigate the transcriptome during the male sterility transition in <italic>pol</italic> CMS, a near-isogenic line (NIL) of <italic>pol</italic> CMS was constructed. The phenotypic features and sterility stage were confirmed by anatomical analysis. Subsequently, we compared the genomic expression profiles of fertile and sterile young flower buds by RNA-Seq. A total of 105,481,136 sequences were successfully obtained. These reads were assembled into 112,770 unigenes, which composed the transcriptome of the bud. Among these unigenes, 72,408 (64.21%) were annotated using public protein databases and classified into functional clusters. In addition, we investigated the changes in expression of the fertile and sterile buds; the RNA-seq data showed 1,148 unigenes had significantly different expression and they were mainly distributed in metabolic and protein synthesis pathways. Additionally, some unigenes controlling anther development were dramatically down-regulated in sterile buds.</p></sec><sec><title>Conclusions</title><p>These results suggested that an energy deficiency caused by <italic>orf224/atp6</italic> may inhibit a series of genes that regulate pollen development through nuclear-mitochondrial interaction. This results in the sterility of <italic>pol</italic> CMS by leading to the failure of sporogenous cell differentiation. This study may provide assistance for detailed molecular analysis and a better understanding of <italic>pol</italic> CMS in <italic>B. napus.</italic></p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Han Zhong, W" uniqKey="Han Zhong W">W Han-zhong</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chen, J" uniqKey="Chen J">J Chen</name></author><author><name sortKey="Guan, R" uniqKey="Guan R">R Guan</name></author><author><name sortKey="Chang, S" uniqKey="Chang S">S Chang</name></author><author><name sortKey="Du, T" uniqKey="Du T">T Du</name></author><author><name sortKey="Zhang, H" uniqKey="Zhang H">H Zhang</name></author><author><name sortKey="Xing, H" uniqKey="Xing H">H Xing</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Luo, D" uniqKey="Luo D">D Luo</name></author><author><name sortKey="Xu, H" uniqKey="Xu H">H Xu</name></author><author><name 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Pertea</name></author><author><name sortKey="Mortazavi, A" uniqKey="Mortazavi A">A Mortazavi</name></author><author><name sortKey="Kwan, G" uniqKey="Kwan G">G Kwan</name></author><author><name sortKey="Van Baren, Mj" uniqKey="Van Baren M">MJ van Baren</name></author><author><name sortKey="Salzberg, Sl" uniqKey="Salzberg S">SL Salzberg</name></author><author><name sortKey="Wold, Bj" uniqKey="Wold B">BJ Wold</name></author><author><name sortKey="Pachter, L" uniqKey="Pachter L">L Pachter</name></author></analytic></biblStruct></listBibl></div1></back></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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