Genome-wide identification, isolation and expression analysis of auxin response factor (ARF) gene family in sweet orange (Citrus sinensis)
Identifieur interne : 000616 ( Main/Merge ); précédent : 000615; suivant : 000617Genome-wide identification, isolation and expression analysis of auxin response factor (ARF) gene family in sweet orange (Citrus sinensis)
Auteurs : Si-Bei Li [République populaire de Chine] ; Wei-Zhi Ouyang [République populaire de Chine] ; Xiao-Jin Hou [République populaire de Chine] ; Liang-Liang Xie [République populaire de Chine] ; Chun-Gen Hu [République populaire de Chine] ; Jin-Zhi Zhang [République populaire de Chine]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2015.
Abstract
Auxin response factors (ARFs) are an important family of proteins in auxin-mediated response, with key roles in various physiological and biochemical processes. To date, a genome-wide overview of the
Url:
DOI: 10.3389/fpls.2015.00119
PubMed: 25870601
PubMed Central: 4378189
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Education, College of Horticulture and Forestry Science, Huazhong Agricultural University</institution><country>Wuhan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>College of Plant Sciences and Technology, Huazhong Agricultural University</institution><country>Wuhan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Hou, Xiao Jin" sort="Hou, Xiao Jin" uniqKey="Hou X" first="Xiao-Jin" last="Hou">Xiao-Jin Hou</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Science, Huazhong Agricultural University</institution><country>Wuhan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Xie, Liang Liang" sort="Xie, Liang Liang" uniqKey="Xie L" first="Liang-Liang" last="Xie">Liang-Liang Xie</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Science, Huazhong Agricultural University</institution><country>Wuhan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Hu, Chun Gen" sort="Hu, Chun Gen" uniqKey="Hu C" first="Chun-Gen" last="Hu">Chun-Gen Hu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Science, Huazhong Agricultural University</institution><country>Wuhan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Jin Zhi" sort="Zhang, Jin Zhi" uniqKey="Zhang J" first="Jin-Zhi" last="Zhang">Jin-Zhi Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Science, Huazhong Agricultural University</institution><country>Wuhan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">25870601</idno><idno type="pmc">4378189</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4378189</idno><idno type="RBID">PMC:4378189</idno><idno type="doi">10.3389/fpls.2015.00119</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000F32</idno><idno 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Education, College of Horticulture and Forestry Science, Huazhong Agricultural University</institution><country>Wuhan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Ouyang, Wei Zhi" sort="Ouyang, Wei Zhi" uniqKey="Ouyang W" first="Wei-Zhi" last="Ouyang">Wei-Zhi Ouyang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Science, Huazhong Agricultural University</institution><country>Wuhan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>College of Plant Sciences and Technology, Huazhong Agricultural University</institution><country>Wuhan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Hou, Xiao Jin" sort="Hou, Xiao Jin" uniqKey="Hou X" first="Xiao-Jin" last="Hou">Xiao-Jin Hou</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Science, Huazhong Agricultural University</institution><country>Wuhan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Xie, Liang Liang" sort="Xie, Liang Liang" uniqKey="Xie L" first="Liang-Liang" last="Xie">Liang-Liang Xie</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Science, Huazhong Agricultural University</institution><country>Wuhan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Hu, Chun Gen" sort="Hu, Chun Gen" uniqKey="Hu C" first="Chun-Gen" last="Hu">Chun-Gen Hu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Science, Huazhong Agricultural University</institution><country>Wuhan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Jin Zhi" sort="Zhang, Jin Zhi" uniqKey="Zhang J" first="Jin-Zhi" last="Zhang">Jin-Zhi Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Science, Huazhong Agricultural University</institution><country>Wuhan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Auxin response factors (ARFs) are an important family of proteins in auxin-mediated response, with key roles in various physiological and biochemical processes. To date, a genome-wide overview of the <italic>ARF</italic> gene family in citrus was not available. A systematic analysis of this gene family in citrus was begun by carrying out a genome-wide search for the homologs of ARFs. A total of 19 nonredundant <italic>ARF</italic> genes (<italic>CiARF</italic>) were found and validated from the sweet orange. A comprehensive overview of the <italic>CiARF</italic>s was undertaken, including the gene structures, phylogenetic analysis, chromosome locations, conserved motifs of proteins, and <italic>cis</italic>-elements in promoters of CiARF. Furthermore, expression profiling using real-time PCR revealed many <italic>CiARF</italic> genes, albeit with different patterns depending on types of tissues and/or developmental stages. Comprehensive expression analysis of these genes was also performed under two hormone treatments using real-time PCR. Indole-3-acetic acid (IAA) and N-1-napthylphthalamic acid (NPA) treatment experiments revealed differential up-regulation and down-regulation, respectively, of the 19 citrus <italic>ARF</italic> genes in the callus of sweet orange. Our comprehensive analysis of ARF genes further elucidates the roles of <italic>CiARF</italic> family members during citrus growth and development process.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Bailey, T L" uniqKey="Bailey T">T. L. Bailey</name></author><author><name sortKey="Elkan, C" uniqKey="Elkan C">C. Elkan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="De Jong, M" uniqKey="De Jong M">M. de Jong</name></author><author><name sortKey="Mariani, C" uniqKey="Mariani C">C. Mariani</name></author><author><name sortKey="Vriezen, W H" uniqKey="Vriezen W">W. H. 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