PhytoPath: an integrative resource for plant pathogen genomics
Identifieur interne : 000498 ( Main/Merge ); précédent : 000497; suivant : 000499PhytoPath: an integrative resource for plant pathogen genomics
Auteurs : Helder Pedro [Royaume-Uni] ; Uma Maheswari [Royaume-Uni] ; Martin Urban [Royaume-Uni] ; Alistair George Irvine [Royaume-Uni] ; Alayne Cuzick [Royaume-Uni] ; Mark D. Mcdowall [Royaume-Uni] ; Daniel M. Staines [Royaume-Uni] ; Eugene Kulesha [Royaume-Uni] ; Kim Elizabeth Hammond-Kosack [Royaume-Uni] ; Paul Julian Kersey [Royaume-Uni]Source :
- Nucleic Acids Research [ 0305-1048 ] ; 2015.
Abstract
PhytoPath (
Url:
DOI: 10.1093/nar/gkv1052
PubMed: 26476449
PubMed Central: 4702788
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PMC:4702788Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">PhytoPath: an integrative resource for plant pathogen genomics</title><author><name sortKey="Pedro, Helder" sort="Pedro, Helder" uniqKey="Pedro H" first="Helder" last="Pedro">Helder Pedro</name><affiliation wicri:level="1"><nlm:aff id="AFF1">The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Maheswari, Uma" sort="Maheswari, Uma" uniqKey="Maheswari U" first="Uma" last="Maheswari">Uma Maheswari</name><affiliation wicri:level="1"><nlm:aff id="AFF1">The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Urban, Martin" sort="Urban, Martin" uniqKey="Urban M" first="Martin" last="Urban">Martin Urban</name><affiliation wicri:level="1"><nlm:aff id="AFF2">Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts, AL5 2JQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts, AL5 2JQ</wicri:regionArea><wicri:noRegion>AL5 2JQ</wicri:noRegion></affiliation></author><author><name sortKey="Irvine, Alistair George" sort="Irvine, Alistair George" uniqKey="Irvine A" first="Alistair George" last="Irvine">Alistair George Irvine</name><affiliation wicri:level="1"><nlm:aff id="AFF3">Department of Computational and Systems Biology, Rothamsted Research, Harpenden, Herts, AL5 2JQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Computational and Systems Biology, Rothamsted Research, Harpenden, Herts, AL5 2JQ</wicri:regionArea><wicri:noRegion>AL5 2JQ</wicri:noRegion></affiliation></author><author><name sortKey="Cuzick, Alayne" sort="Cuzick, Alayne" uniqKey="Cuzick A" first="Alayne" last="Cuzick">Alayne Cuzick</name><affiliation wicri:level="1"><nlm:aff id="AFF2">Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts, AL5 2JQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts, AL5 2JQ</wicri:regionArea><wicri:noRegion>AL5 2JQ</wicri:noRegion></affiliation></author><author><name sortKey="Mcdowall, Mark D" sort="Mcdowall, Mark D" uniqKey="Mcdowall M" first="Mark D." last="Mcdowall">Mark D. 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Staines</name><affiliation wicri:level="1"><nlm:aff id="AFF1">The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Kulesha, Eugene" sort="Kulesha, Eugene" uniqKey="Kulesha E" first="Eugene" last="Kulesha">Eugene Kulesha</name><affiliation wicri:level="1"><nlm:aff id="AFF1">The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Hammond Kosack, Kim Elizabeth" sort="Hammond Kosack, Kim Elizabeth" uniqKey="Hammond Kosack K" first="Kim Elizabeth" last="Hammond-Kosack">Kim Elizabeth Hammond-Kosack</name><affiliation wicri:level="1"><nlm:aff id="AFF2">Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts, AL5 2JQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts, AL5 2JQ</wicri:regionArea><wicri:noRegion>AL5 2JQ</wicri:noRegion></affiliation></author><author><name sortKey="Kersey, Paul Julian" sort="Kersey, Paul Julian" uniqKey="Kersey P" first="Paul Julian" last="Kersey">Paul Julian Kersey</name><affiliation wicri:level="1"><nlm:aff id="AFF1">The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26476449</idno><idno type="pmc">4702788</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702788</idno><idno type="RBID">PMC:4702788</idno><idno type="doi">10.1093/nar/gkv1052</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000120</idno><idno type="wicri:Area/Pmc/Curation">000120</idno><idno type="wicri:Area/Pmc/Checkpoint">000389</idno><idno type="wicri:Area/Ncbi/Merge">001D62</idno><idno type="wicri:Area/Ncbi/Curation">001D62</idno><idno type="wicri:Area/Ncbi/Checkpoint">001D62</idno><idno type="wicri:doubleKey">0305-1048:2015:Pedro H:phytopath:an:integrative</idno><idno type="wicri:Area/Main/Merge">000498</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">PhytoPath: an integrative resource for plant pathogen genomics</title><author><name sortKey="Pedro, Helder" sort="Pedro, Helder" uniqKey="Pedro H" first="Helder" last="Pedro">Helder Pedro</name><affiliation wicri:level="1"><nlm:aff id="AFF1">The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Maheswari, Uma" sort="Maheswari, Uma" uniqKey="Maheswari U" first="Uma" last="Maheswari">Uma Maheswari</name><affiliation wicri:level="1"><nlm:aff id="AFF1">The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Urban, Martin" sort="Urban, Martin" uniqKey="Urban M" first="Martin" last="Urban">Martin Urban</name><affiliation wicri:level="1"><nlm:aff id="AFF2">Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts, AL5 2JQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts, AL5 2JQ</wicri:regionArea><wicri:noRegion>AL5 2JQ</wicri:noRegion></affiliation></author><author><name sortKey="Irvine, Alistair George" sort="Irvine, Alistair George" uniqKey="Irvine A" first="Alistair George" last="Irvine">Alistair George Irvine</name><affiliation wicri:level="1"><nlm:aff id="AFF3">Department of Computational and Systems Biology, Rothamsted Research, Harpenden, Herts, AL5 2JQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Computational and Systems Biology, Rothamsted Research, Harpenden, Herts, AL5 2JQ</wicri:regionArea><wicri:noRegion>AL5 2JQ</wicri:noRegion></affiliation></author><author><name sortKey="Cuzick, Alayne" sort="Cuzick, Alayne" uniqKey="Cuzick A" first="Alayne" last="Cuzick">Alayne Cuzick</name><affiliation wicri:level="1"><nlm:aff id="AFF2">Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts, AL5 2JQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts, AL5 2JQ</wicri:regionArea><wicri:noRegion>AL5 2JQ</wicri:noRegion></affiliation></author><author><name sortKey="Mcdowall, Mark D" sort="Mcdowall, Mark D" uniqKey="Mcdowall M" first="Mark D." last="Mcdowall">Mark D. Mcdowall</name><affiliation wicri:level="1"><nlm:aff id="AFF1">The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Staines, Daniel M" sort="Staines, Daniel M" uniqKey="Staines D" first="Daniel M." last="Staines">Daniel M. Staines</name><affiliation wicri:level="1"><nlm:aff id="AFF1">The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Kulesha, Eugene" sort="Kulesha, Eugene" uniqKey="Kulesha E" first="Eugene" last="Kulesha">Eugene Kulesha</name><affiliation wicri:level="1"><nlm:aff id="AFF1">The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Hammond Kosack, Kim Elizabeth" sort="Hammond Kosack, Kim Elizabeth" uniqKey="Hammond Kosack K" first="Kim Elizabeth" last="Hammond-Kosack">Kim Elizabeth Hammond-Kosack</name><affiliation wicri:level="1"><nlm:aff id="AFF2">Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts, AL5 2JQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts, AL5 2JQ</wicri:regionArea><wicri:noRegion>AL5 2JQ</wicri:noRegion></affiliation></author><author><name sortKey="Kersey, Paul Julian" sort="Kersey, Paul Julian" uniqKey="Kersey P" first="Paul Julian" last="Kersey">Paul Julian Kersey</name><affiliation wicri:level="1"><nlm:aff id="AFF1">The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>PhytoPath (<ext-link ext-link-type="uri" xlink:href="http://www.phytopathdb.org">www.phytopathdb.org</ext-link>) is a resource for genomic and phenotypic data from plant pathogen species, that integrates phenotypic data for genes from PHI-base, an expertly curated catalog of genes with experimentally verified pathogenicity, with the Ensembl tools for data visualization and analysis. The resource is focused on fungi, protists (oomycetes) and bacterial plant pathogens that have genomes that have been sequenced and annotated. Genes with associated PHI-base data can be easily identified across all plant pathogen species using a BioMart-based query tool and visualized in their genomic context on the Ensembl genome browser. The PhytoPath resource contains data for 135 genomic sequences from 87 plant pathogen species, and 1364 genes curated for their role in pathogenicity and as targets for chemical intervention. Support for community annotation of gene models is provided using the WebApollo online gene editor, and we are working with interested communities to improve reference annotation for selected species.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Nakamura, Y" uniqKey="Nakamura Y">Y. Nakamura</name></author><author><name sortKey="Cochrane, G" uniqKey="Cochrane G">G. 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Lewis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hammond Kosack" uniqKey="Hammond Kosack">Hammond-Kosack</name></author><author><name sortKey="Jones, J D" uniqKey="Jones J">J.D. Jones</name></author></analytic></biblStruct></listBibl></div1></back></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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