Genome-Wide Identification of Jatropha curcas Aquaporin Genes and the Comparative Analysis Provides Insights into the Gene Family Expansion and Evolution in Hevea brasiliensis
Identifieur interne : 000201 ( Main/Exploration ); précédent : 000200; suivant : 000202Genome-Wide Identification of Jatropha curcas Aquaporin Genes and the Comparative Analysis Provides Insights into the Gene Family Expansion and Evolution in Hevea brasiliensis
Auteurs : Zhi Zou ; Lifu Yang ; Jun Gong ; Yeyong Mo ; Jikun Wang ; Jianhua Cao ; Feng An ; Guishui XieSource :
- Frontiers in Plant Science [ 1664-462X ] ; 2016.
Abstract
Aquaporins (AQPs) are channel-forming integral membrane proteins that transport water and other small solutes across biological membranes. Despite the vital role of AQPs, to date, little is known in physic nut (
Url:
DOI: 10.3389/fpls.2016.00395
PubMed: 27066041
PubMed Central: 4814485
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome-Wide Identification of <italic>Jatropha curcas</italic> Aquaporin Genes and the Comparative Analysis Provides Insights into the Gene Family Expansion and Evolution in <italic>Hevea brasiliensis</italic></title><author><name sortKey="Zou, Zhi" sort="Zou, Zhi" uniqKey="Zou Z" first="Zhi" last="Zou">Zhi Zou</name></author><author><name sortKey="Yang, Lifu" sort="Yang, Lifu" uniqKey="Yang L" first="Lifu" last="Yang">Lifu Yang</name></author><author><name sortKey="Gong, Jun" sort="Gong, Jun" uniqKey="Gong J" first="Jun" last="Gong">Jun Gong</name></author><author><name sortKey="Mo, Yeyong" sort="Mo, Yeyong" uniqKey="Mo Y" first="Yeyong" last="Mo">Yeyong Mo</name></author><author><name sortKey="Wang, Jikun" sort="Wang, Jikun" uniqKey="Wang J" first="Jikun" last="Wang">Jikun Wang</name></author><author><name sortKey="Cao, Jianhua" sort="Cao, Jianhua" uniqKey="Cao J" first="Jianhua" last="Cao">Jianhua Cao</name></author><author><name sortKey="An, Feng" sort="An, Feng" uniqKey="An F" first="Feng" last="An">Feng An</name></author><author><name sortKey="Xie, Guishui" sort="Xie, Guishui" uniqKey="Xie G" first="Guishui" last="Xie">Guishui Xie</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27066041</idno><idno type="pmc">4814485</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4814485</idno><idno type="RBID">PMC:4814485</idno><idno type="doi">10.3389/fpls.2016.00395</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000316</idno><idno type="wicri:Area/Pmc/Curation">000315</idno><idno type="wicri:Area/Pmc/Checkpoint">000165</idno><idno type="wicri:Area/Ncbi/Merge">001F84</idno><idno type="wicri:Area/Ncbi/Curation">001F84</idno><idno type="wicri:Area/Ncbi/Checkpoint">001F84</idno><idno type="wicri:Area/Main/Merge">000201</idno><idno type="wicri:Area/Main/Curation">000201</idno><idno type="wicri:Area/Main/Exploration">000201</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genome-Wide Identification of <italic>Jatropha curcas</italic> Aquaporin Genes and the Comparative Analysis Provides Insights into the Gene Family Expansion and Evolution in <italic>Hevea brasiliensis</italic></title><author><name sortKey="Zou, Zhi" sort="Zou, Zhi" uniqKey="Zou Z" first="Zhi" last="Zou">Zhi Zou</name></author><author><name sortKey="Yang, Lifu" sort="Yang, Lifu" uniqKey="Yang L" first="Lifu" last="Yang">Lifu Yang</name></author><author><name sortKey="Gong, Jun" sort="Gong, Jun" uniqKey="Gong J" first="Jun" last="Gong">Jun Gong</name></author><author><name sortKey="Mo, Yeyong" sort="Mo, Yeyong" uniqKey="Mo Y" first="Yeyong" last="Mo">Yeyong Mo</name></author><author><name sortKey="Wang, Jikun" sort="Wang, Jikun" uniqKey="Wang J" first="Jikun" last="Wang">Jikun Wang</name></author><author><name sortKey="Cao, Jianhua" sort="Cao, Jianhua" uniqKey="Cao J" first="Jianhua" last="Cao">Jianhua Cao</name></author><author><name sortKey="An, Feng" sort="An, Feng" uniqKey="An F" first="Feng" last="An">Feng An</name></author><author><name sortKey="Xie, Guishui" sort="Xie, Guishui" uniqKey="Xie G" first="Guishui" last="Xie">Guishui Xie</name></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Aquaporins (AQPs) are channel-forming integral membrane proteins that transport water and other small solutes across biological membranes. Despite the vital role of AQPs, to date, little is known in physic nut (<italic>Jatropha curcas</italic> L., Euphorbiaceae), an important non-edible oilseed crop with great potential for the production of biodiesel. In this study, 32 AQP genes were identified from the physic nut genome and the family number is relatively small in comparison to 51 in another Euphorbiaceae plant, rubber tree (<italic>Hevea brasiliensis</italic> Muell. Arg.). Based on the phylogenetic analysis, the JcAQPs were assigned to five subfamilies, i.e., nine plasma membrane intrinsic proteins (PIPs), nine tonoplast intrinsic proteins (TIPs), eight NOD26-like intrinsic proteins (NIPs), two X intrinsic proteins (XIPs), and four small basic intrinsic proteins (SIPs). Like rubber tree and other plant species, functional prediction based on the aromatic/arginine selectivity filter, Froger's positions, and specificity-determining positions showed a remarkable difference in substrate specificity among subfamilies of JcAQPs. Genome-wide comparative analysis revealed the specific expansion of PIP and TIP subfamilies in rubber tree and the specific gene loss of the XIP subfamily in physic nut. Furthermore, by analyzing deep transcriptome sequencing data, the expression evolution especially the expression divergence of duplicated HbAQP genes was also investigated and discussed. Results obtained from this study not only provide valuable information for future functional analysis and utilization of Jc/HbAQP genes, but also provide a useful reference to survey the gene family expansion and evolution in Euphorbiaceae plants and other plant species.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Abascal, F" uniqKey="Abascal F">F. Abascal</name></author><author><name sortKey="Irisarri, I" uniqKey="Irisarri I">I. Irisarri</name></author><author><name sortKey="Zardoya, R" uniqKey="Zardoya R">R. Zardoya</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Altschul, S F" uniqKey="Altschul S">S. F. Altschul</name></author><author><name sortKey="Madden, T L" uniqKey="Madden T">T. L. Madden</name></author><author><name sortKey="Schaffer, A A" uniqKey="Schaffer A">A. A. Schaffer</name></author><author><name sortKey="Zhang, J" uniqKey="Zhang J">J. 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Yuan</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list></list><tree><noCountry><name sortKey="An, Feng" sort="An, Feng" uniqKey="An F" first="Feng" last="An">Feng An</name><name sortKey="Cao, Jianhua" sort="Cao, Jianhua" uniqKey="Cao J" first="Jianhua" last="Cao">Jianhua Cao</name><name sortKey="Gong, Jun" sort="Gong, Jun" uniqKey="Gong J" first="Jun" last="Gong">Jun Gong</name><name sortKey="Mo, Yeyong" sort="Mo, Yeyong" uniqKey="Mo Y" first="Yeyong" last="Mo">Yeyong Mo</name><name sortKey="Wang, Jikun" sort="Wang, Jikun" uniqKey="Wang J" first="Jikun" last="Wang">Jikun Wang</name><name sortKey="Xie, Guishui" sort="Xie, Guishui" uniqKey="Xie G" first="Guishui" last="Xie">Guishui Xie</name><name sortKey="Yang, Lifu" sort="Yang, Lifu" uniqKey="Yang L" first="Lifu" last="Yang">Lifu Yang</name><name sortKey="Zou, Zhi" sort="Zou, Zhi" uniqKey="Zou Z" first="Zhi" last="Zou">Zhi Zou</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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