Genome-wide identification of the Jatropha curcas MYB family and functional analysis of the abiotic stress responsive gene JcMYB2
Identifieur interne : 000193 ( Main/Exploration ); précédent : 000192; suivant : 000194Genome-wide identification of the Jatropha curcas MYB family and functional analysis of the abiotic stress responsive gene JcMYB2
Auteurs : Xianjun Peng [République populaire de Chine] ; Hui Liu [République populaire de Chine] ; Dan Wang [République populaire de Chine] ; Shihua Shen [République populaire de Chine]Source :
- BMC Genomics [ 1471-2164 ] ; 2016.
Abstract
The MYB family is one of the most abundant transcription factor families in plants. MYB proteins are involved in plant development, abiotic stress tolerance, hormone signal transduction and disease resistance. Here we perform genome-wide identification of MYB family transcription factors in an energy plant
The phylogenetic trees were constructed by using the neighbor-joining method in MEGA 5.2. The biological functions of some JcMYBs were predicted according to orthology. The full length cDNA of
A genome-wide analysis identified 128 MYB genes, including 123 R2R3-MYBs, 4 R1R2R3-MYBs and 1 4R-MYB. All of the R2R3-MYBs are further classified into 19 groups which indicated functional conservation among previously identified groups of R2R3-MYB proteins. Among of these newly identified MYBs, the JcMYB2 belongs to group G11 and its expression is induced obviously by cold, salt and MeJA (Methyl Jasmonate) and slightly by ABA (abscisic acid). JcMYB2 is localized to the nucleus and has transcriptional activity.
A comprehensive genome-wide analysis and phylogenetic relationship of R2R3-MYB subfamily in
The online version of this article (doi:10.1186/s12864-016-2576-7) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1186/s12864-016-2576-7
PubMed: 27004683
PubMed Central: 4804483
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome-wide identification of the <italic>Jatropha curcas</italic> MYB family and functional analysis of the abiotic stress responsive gene <italic>JcMYB2</italic></title><author><name sortKey="Peng, Xianjun" sort="Peng, Xianjun" uniqKey="Peng X" first="Xianjun" last="Peng">Xianjun Peng</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing, 100093 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Liu, Hui" sort="Liu, Hui" uniqKey="Liu H" first="Hui" last="Liu">Hui Liu</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing, 100093 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Wang, Dan" sort="Wang, Dan" uniqKey="Wang D" first="Dan" last="Wang">Dan Wang</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing, 100093 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Shen, Shihua" sort="Shen, Shihua" uniqKey="Shen S" first="Shihua" last="Shen">Shihua Shen</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing, 100093 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27004683</idno><idno type="pmc">4804483</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4804483</idno><idno type="RBID">PMC:4804483</idno><idno type="doi">10.1186/s12864-016-2576-7</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000604</idno><idno type="wicri:Area/Pmc/Curation">000603</idno><idno type="wicri:Area/Pmc/Checkpoint">000157</idno><idno type="wicri:Area/Ncbi/Merge">001F70</idno><idno type="wicri:Area/Ncbi/Curation">001F70</idno><idno type="wicri:Area/Ncbi/Checkpoint">001F70</idno><idno type="wicri:Area/Main/Merge">000193</idno><idno type="wicri:Area/Main/Curation">000193</idno><idno type="wicri:Area/Main/Exploration">000193</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genome-wide identification of the <italic>Jatropha curcas</italic> MYB family and functional analysis of the abiotic stress responsive gene <italic>JcMYB2</italic></title><author><name sortKey="Peng, Xianjun" sort="Peng, Xianjun" uniqKey="Peng X" first="Xianjun" last="Peng">Xianjun Peng</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing, 100093 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Liu, Hui" sort="Liu, Hui" uniqKey="Liu H" first="Hui" last="Liu">Hui Liu</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing, 100093 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Wang, Dan" sort="Wang, Dan" uniqKey="Wang D" first="Dan" last="Wang">Dan Wang</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing, 100093 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Shen, Shihua" sort="Shen, Shihua" uniqKey="Shen S" first="Shihua" last="Shen">Shihua Shen</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing, 100093 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></analytic><series><title level="j">BMC Genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>The MYB family is one of the most abundant transcription factor families in plants. MYB proteins are involved in plant development, abiotic stress tolerance, hormone signal transduction and disease resistance. Here we perform genome-wide identification of MYB family transcription factors in an energy plant <italic>J. curcas</italic>, including determining family composition, phylogenetic evolution and functional prediction analysis. In addition, we further elucidate the function of the <italic>JcMYB2</italic> gene.</p></sec><sec><title>Methods</title><p>The phylogenetic trees were constructed by using the neighbor-joining method in MEGA 5.2. The biological functions of some JcMYBs were predicted according to orthology. The full length cDNA of <italic>JcMYB2</italic> was cloned by using the RACE method. GUS histochemical staining was used to test the activity of the <italic>JcMYB2</italic> promoter. Expression patterns of <italic>JcMYB2</italic> were detected by using qPCR Transcriptional activity JcMYB2 were confirmed through yeast one hybrid. Subcellular Localization of JcMYB2 Protein were demonstrated by transient expression in the tobacco leaf. The function of <italic>JcMYB2</italic> in salt and freezing tolerance were detected in transgenic plants.</p></sec><sec><title>Results</title><p>A genome-wide analysis identified 128 MYB genes, including 123 R2R3-MYBs, 4 R1R2R3-MYBs and 1 4R-MYB. All of the R2R3-MYBs are further classified into 19 groups which indicated functional conservation among previously identified groups of R2R3-MYB proteins. Among of these newly identified MYBs, the JcMYB2 belongs to group G11 and its expression is induced obviously by cold, salt and MeJA (Methyl Jasmonate) and slightly by ABA (abscisic acid). JcMYB2 is localized to the nucleus and has transcriptional activity. <italic>JcMYB2</italic> overexpressing plants are more tolerant to salt and cold stress than wild type plants. Tissue specific expression profiles showed that the <italic>JcMYB2</italic> gene was expressed ubiquitously throughout the plant, with higher expression levels observed in the root.</p></sec><sec><title>Conclusion</title><p>A comprehensive genome-wide analysis and phylogenetic relationship of R2R3-MYB subfamily in <italic>J. curcas</italic> present the global identification and functional prediction of JcR2R3-MYBs. Additionally, JcMYB2 regulates the stress response signaling networks by interacting with MeJA and ABA signaling pathway and functions in the root development of <italic>J. curcas</italic>.</p></sec><sec><title>Electronic supplementary material</title><p>The online version of this article (doi:10.1186/s12864-016-2576-7) contains supplementary material, which is available to authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Liang, Y" uniqKey="Liang Y">Y Liang</name></author><author><name sortKey="Chen, H" uniqKey="Chen H">H Chen</name></author><author><name sortKey="Tang, Mj" uniqKey="Tang M">MJ Tang</name></author><author><name sortKey="Yang, Pf" uniqKey="Yang P">PF Yang</name></author><author><name sortKey="Shen, Sh" uniqKey="Shen S">SH Shen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Johnson, Ts" uniqKey="Johnson T">TS Johnson</name></author><author><name 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uniqKey="Lee M">MM Lee</name></author><author><name sortKey="Schiefelbein, J" uniqKey="Schiefelbein J">J Schiefelbein</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Koshino Kimura, Y" uniqKey="Koshino Kimura Y">Y Koshino-Kimura</name></author><author><name sortKey="Wada, T" uniqKey="Wada T">T Wada</name></author><author><name sortKey="Tachibana, T" uniqKey="Tachibana T">T Tachibana</name></author><author><name sortKey="Tsugeki, R" uniqKey="Tsugeki R">R Tsugeki</name></author><author><name sortKey="Ishiguro, S" uniqKey="Ishiguro S">S Ishiguro</name></author><author><name sortKey="Okada, K" uniqKey="Okada K">K Okada</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Oppenheimer, Dg" uniqKey="Oppenheimer D">DG Oppenheimer</name></author><author><name sortKey="Herman, Pl" uniqKey="Herman P">PL Herman</name></author><author><name sortKey="Sivakumaran, S" uniqKey="Sivakumaran S">S Sivakumaran</name></author><author><name sortKey="Esch, J" uniqKey="Esch J">J Esch</name></author><author><name sortKey="Marks, Md" uniqKey="Marks M">MD Marks</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Peng, Xianjun" sort="Peng, Xianjun" uniqKey="Peng X" first="Xianjun" last="Peng">Xianjun Peng</name></noRegion><name sortKey="Liu, Hui" sort="Liu, Hui" uniqKey="Liu H" first="Hui" last="Liu">Hui Liu</name><name sortKey="Shen, Shihua" sort="Shen, Shihua" uniqKey="Shen S" first="Shihua" last="Shen">Shihua Shen</name><name sortKey="Wang, Dan" sort="Wang, Dan" uniqKey="Wang D" first="Dan" last="Wang">Dan Wang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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