Complete Chloroplast Genome Sequence of Omani Lime (Citrus aurantiifolia) and Comparative Analysis within the Rosids
Identifieur interne : 000B50 ( Main/Exploration ); précédent : 000B49; suivant : 000B51Complete Chloroplast Genome Sequence of Omani Lime (Citrus aurantiifolia) and Comparative Analysis within the Rosids
Auteurs : Huei-Jiun Su [Taïwan] ; Saskia A. Hogenhout [Royaume-Uni] ; Abdullah M. Al-Sadi [Oman] ; Chih-Horng Kuo [Taïwan]Source :
- PLoS ONE [ 1932-6203 ] ; 2014.
Abstract
The genus
Url:
DOI: 10.1371/journal.pone.0113049
PubMed: 25398081
PubMed Central: 4232571
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Complete Chloroplast Genome Sequence of Omani Lime (<italic>Citrus aurantiifolia</italic>) and Comparative Analysis within the Rosids</title><author><name sortKey="Su, Huei Jiun" sort="Su, Huei Jiun" uniqKey="Su H" first="Huei-Jiun" last="Su">Huei-Jiun Su</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Institute of Ecology and Evolutionary Biology, National Taiwan University, Taipei, Taiwan</addr-line></nlm:aff><country xml:lang="fr">Taïwan</country><wicri:regionArea>Institute of Ecology and Evolutionary Biology, National Taiwan University, Taipei</wicri:regionArea><wicri:noRegion>Taipei</wicri:noRegion></affiliation></author><author><name sortKey="Hogenhout, Saskia A" sort="Hogenhout, Saskia A" uniqKey="Hogenhout S" first="Saskia A." last="Hogenhout">Saskia A. Hogenhout</name><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Department of Cell and Developmental Biology, John Innes Centre, Norwich, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Cell and Developmental Biology, John Innes Centre, Norwich</wicri:regionArea><wicri:noRegion>Norwich</wicri:noRegion></affiliation></author><author><name sortKey="Al Sadi, Abdullah M" sort="Al Sadi, Abdullah M" uniqKey="Al Sadi A" first="Abdullah M." last="Al-Sadi">Abdullah M. Al-Sadi</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Department of Crop Sciences, Sultan Qaboos University, Al Khoud, Oman</addr-line></nlm:aff><country xml:lang="fr">Oman</country><wicri:regionArea>Department of Crop Sciences, Sultan Qaboos University, Al Khoud</wicri:regionArea><wicri:noRegion>Al Khoud</wicri:noRegion></affiliation></author><author><name sortKey="Kuo, Chih Horng" sort="Kuo, Chih Horng" uniqKey="Kuo C" first="Chih-Horng" last="Kuo">Chih-Horng Kuo</name><affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan</addr-line></nlm:aff><country xml:lang="fr">Taïwan</country><wicri:regionArea>Institute of Plant and Microbial Biology, Academia Sinica, Taipei</wicri:regionArea><wicri:noRegion>Taipei</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff5"><addr-line>Molecular and Biological Agricultural Sciences Program, Taiwan International Graduate Program, National Chung Hsing University and Academia Sinica, Taipei, Taiwan</addr-line></nlm:aff><country xml:lang="fr">Taïwan</country><wicri:regionArea>Molecular and Biological Agricultural Sciences Program, Taiwan International Graduate Program, National Chung Hsing University and Academia Sinica, Taipei</wicri:regionArea><wicri:noRegion>Taipei</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff6"><addr-line>Biotechnology Center, National Chung Hsing University, Taichung, Taiwan</addr-line></nlm:aff><country xml:lang="fr">Taïwan</country><wicri:regionArea>Biotechnology Center, National Chung Hsing University, Taichung</wicri:regionArea><wicri:noRegion>Taichung</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">25398081</idno><idno type="pmc">4232571</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4232571</idno><idno type="RBID">PMC:4232571</idno><idno type="doi">10.1371/journal.pone.0113049</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">000219</idno><idno type="wicri:Area/Pmc/Curation">000219</idno><idno type="wicri:Area/Pmc/Checkpoint">000871</idno><idno type="wicri:Area/Ncbi/Merge">001900</idno><idno type="wicri:Area/Ncbi/Curation">001900</idno><idno type="wicri:Area/Ncbi/Checkpoint">001900</idno><idno type="wicri:Area/Main/Merge">000B53</idno><idno type="wicri:Area/Main/Curation">000B50</idno><idno type="wicri:Area/Main/Exploration">000B50</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Complete Chloroplast Genome Sequence of Omani Lime (<italic>Citrus aurantiifolia</italic>) and Comparative Analysis within the Rosids</title><author><name sortKey="Su, Huei Jiun" sort="Su, Huei Jiun" uniqKey="Su H" first="Huei-Jiun" last="Su">Huei-Jiun Su</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Institute of Ecology and Evolutionary Biology, National Taiwan University, Taipei, Taiwan</addr-line></nlm:aff><country xml:lang="fr">Taïwan</country><wicri:regionArea>Institute of Ecology and Evolutionary Biology, National Taiwan University, Taipei</wicri:regionArea><wicri:noRegion>Taipei</wicri:noRegion></affiliation></author><author><name sortKey="Hogenhout, Saskia A" sort="Hogenhout, Saskia A" uniqKey="Hogenhout S" first="Saskia A." last="Hogenhout">Saskia A. Hogenhout</name><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Department of Cell and Developmental Biology, John Innes Centre, Norwich, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Cell and Developmental Biology, John Innes Centre, Norwich</wicri:regionArea><wicri:noRegion>Norwich</wicri:noRegion></affiliation></author><author><name sortKey="Al Sadi, Abdullah M" sort="Al Sadi, Abdullah M" uniqKey="Al Sadi A" first="Abdullah M." last="Al-Sadi">Abdullah M. Al-Sadi</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Department of Crop Sciences, Sultan Qaboos University, Al Khoud, Oman</addr-line></nlm:aff><country xml:lang="fr">Oman</country><wicri:regionArea>Department of Crop Sciences, Sultan Qaboos University, Al Khoud</wicri:regionArea><wicri:noRegion>Al Khoud</wicri:noRegion></affiliation></author><author><name sortKey="Kuo, Chih Horng" sort="Kuo, Chih Horng" uniqKey="Kuo C" first="Chih-Horng" last="Kuo">Chih-Horng Kuo</name><affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan</addr-line></nlm:aff><country xml:lang="fr">Taïwan</country><wicri:regionArea>Institute of Plant and Microbial Biology, Academia Sinica, Taipei</wicri:regionArea><wicri:noRegion>Taipei</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff5"><addr-line>Molecular and Biological Agricultural Sciences Program, Taiwan International Graduate Program, National Chung Hsing University and Academia Sinica, Taipei, Taiwan</addr-line></nlm:aff><country xml:lang="fr">Taïwan</country><wicri:regionArea>Molecular and Biological Agricultural Sciences Program, Taiwan International Graduate Program, National Chung Hsing University and Academia Sinica, Taipei</wicri:regionArea><wicri:noRegion>Taipei</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff6"><addr-line>Biotechnology Center, National Chung Hsing University, Taichung, Taiwan</addr-line></nlm:aff><country xml:lang="fr">Taïwan</country><wicri:regionArea>Biotechnology Center, National Chung Hsing University, Taichung</wicri:regionArea><wicri:noRegion>Taichung</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The genus <italic>Citrus</italic> contains many economically important fruits that are grown worldwide for their high nutritional and medicinal value. Due to frequent hybridizations among species and cultivars, the exact number of natural species and the taxonomic relationships within this genus are unclear. To compare the differences between the <italic>Citrus</italic> chloroplast genomes and to develop useful genetic markers, we used a reference-assisted approach to assemble the complete chloroplast genome of Omani lime (<italic>C</italic>. <italic>aurantiifolia</italic>). The complete <italic>C</italic>. <italic>aurantiifolia</italic> chloroplast genome is 159,893 bp in length; the organization and gene content are similar to most of the rosids lineages characterized to date. Through comparison with the sweet orange (<italic>C. sinensis</italic>) chloroplast genome, we identified three intergenic regions and 94 simple sequence repeats (SSRs) that are potentially informative markers with resolution for interspecific relationships. These markers can be utilized to better understand the origin of cultivated <italic>Citrus</italic>. A comparison among 72 species belonging to 10 families of representative rosids lineages also provides new insights into their chloroplast genome evolution.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Tripoli, E" uniqKey="Tripoli E">E Tripoli</name></author><author><name sortKey="Guardia, Ml" uniqKey="Guardia M">ML Guardia</name></author><author><name sortKey="Giammanco, S" uniqKey="Giammanco S">S Giammanco</name></author><author><name sortKey="Majo, Dd" uniqKey="Majo D">DD Majo</name></author><author><name sortKey="Giammanco, M" uniqKey="Giammanco M">M Giammanco</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ezeabara, Ca" uniqKey="Ezeabara C">CA Ezeabara</name></author><author><name sortKey="Okeke, Cu" uniqKey="Okeke C">CU Okeke</name></author><author><name sortKey="Aziagba, Bo" uniqKey="Aziagba B">BO Aziagba</name></author><author><name sortKey="Ilodibia, Cv" 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Matthews</name></author><author><name sortKey="Collins, Lj" uniqKey="Collins L">LJ Collins</name></author><author><name sortKey="Hendy, Md" uniqKey="Hendy M">MD Hendy</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Oman</li><li>Royaume-Uni</li><li>Taïwan</li></country></list><tree><country name="Taïwan"><noRegion><name sortKey="Su, Huei Jiun" sort="Su, Huei Jiun" uniqKey="Su H" first="Huei-Jiun" last="Su">Huei-Jiun Su</name></noRegion><name sortKey="Kuo, Chih Horng" sort="Kuo, Chih Horng" uniqKey="Kuo C" first="Chih-Horng" last="Kuo">Chih-Horng Kuo</name><name sortKey="Kuo, Chih Horng" sort="Kuo, Chih Horng" uniqKey="Kuo C" first="Chih-Horng" last="Kuo">Chih-Horng Kuo</name><name sortKey="Kuo, Chih Horng" sort="Kuo, Chih Horng" uniqKey="Kuo C" first="Chih-Horng" last="Kuo">Chih-Horng Kuo</name></country><country name="Royaume-Uni"><noRegion><name sortKey="Hogenhout, Saskia A" sort="Hogenhout, Saskia A" uniqKey="Hogenhout S" first="Saskia A." last="Hogenhout">Saskia A. Hogenhout</name></noRegion></country><country name="Oman"><noRegion><name sortKey="Al Sadi, Abdullah M" sort="Al Sadi, Abdullah M" uniqKey="Al Sadi A" first="Abdullah M." last="Al-Sadi">Abdullah M. Al-Sadi</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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