Transcriptome sequencing of transgenic poplar (Populus × euramericana 'Guariento') expressing multiple resistance genes
Identifieur interne : 000867 ( Main/Exploration ); précédent : 000866; suivant : 000868Transcriptome sequencing of transgenic poplar (Populus × euramericana 'Guariento') expressing multiple resistance genes
Auteurs : Weixi Zhang [République populaire de Chine] ; Yanguang Chu [République populaire de Chine] ; Changjun Ding [République populaire de Chine] ; Bingyu Zhang [République populaire de Chine] ; Qinjun Huang [République populaire de Chine] ; Zanmin Hu [République populaire de Chine] ; Rongfeng Huang [République populaire de Chine] ; Yingchuan Tian [République populaire de Chine] ; Xiaohua Su [République populaire de Chine]Source :
- BMC Genetics [ 1471-2156 ] ; 2014.
Abstract
Transgenic poplar (
We generated 11.80 Gb of sequencing data containing 63, 430, 901 sequences, with an average length of 200 bp. The processed sequences were mapped to reference genome sequences of
These results suggest that the transferred exogenous genes altered the expression of stress (biotic and abiotic) response genes, which were distributed in different metabolic pathways and were linked to some extent. Our results provide a theoretic basis for investigating the functional mechanisms of exogenous genes in transgenic plants.
Url:
DOI: 10.1186/1471-2156-15-S1-S7
PubMed: 25079970
PubMed Central: 4118631
Affiliations:
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Forestry, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="I2">Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Beijing 100091, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Hu, Zanmin" sort="Hu, Zanmin" uniqKey="Hu Z" first="Zanmin" last="Hu">Zanmin Hu</name><affiliation wicri:level="1"><nlm:aff id="I3">Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Huang, Rongfeng" sort="Huang, Rongfeng" uniqKey="Huang R" first="Rongfeng" last="Huang">Rongfeng Huang</name><affiliation wicri:level="1"><nlm:aff id="I4">Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Tian, Yingchuan" sort="Tian, Yingchuan" uniqKey="Tian Y" first="Yingchuan" last="Tian">Yingchuan Tian</name><affiliation wicri:level="1"><nlm:aff id="I5">Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Su, Xiaohua" sort="Su, Xiaohua" uniqKey="Su X" first="Xiaohua" last="Su">Xiaohua Su</name><affiliation wicri:level="1"><nlm:aff id="I1">State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="I2">Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Beijing 100091, China</nlm:aff><country 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type="wicri:Area/Main/Exploration">000867</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Transcriptome sequencing of transgenic poplar (<italic>Populus </italic>× <italic>euramericana </italic>'Guariento') expressing multiple resistance genes</title><author><name sortKey="Zhang, Weixi" sort="Zhang, Weixi" uniqKey="Zhang W" first="Weixi" last="Zhang">Weixi Zhang</name><affiliation wicri:level="1"><nlm:aff id="I1">State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="I2">Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Beijing 100091, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Chu, Yanguang" sort="Chu, Yanguang" uniqKey="Chu Y" first="Yanguang" last="Chu">Yanguang Chu</name><affiliation wicri:level="1"><nlm:aff id="I1">State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="I2">Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Beijing 100091, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Ding, Changjun" sort="Ding, Changjun" uniqKey="Ding C" first="Changjun" last="Ding">Changjun Ding</name><affiliation wicri:level="1"><nlm:aff id="I1">State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="I2">Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Beijing 100091, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zhang, Bingyu" sort="Zhang, Bingyu" uniqKey="Zhang B" first="Bingyu" last="Zhang">Bingyu Zhang</name><affiliation wicri:level="1"><nlm:aff id="I1">State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="I2">Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Beijing 100091, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Huang, Qinjun" sort="Huang, Qinjun" uniqKey="Huang Q" first="Qinjun" last="Huang">Qinjun Huang</name><affiliation wicri:level="1"><nlm:aff id="I1">State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="I2">Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Beijing 100091, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Hu, Zanmin" sort="Hu, Zanmin" uniqKey="Hu Z" first="Zanmin" last="Hu">Zanmin Hu</name><affiliation wicri:level="1"><nlm:aff id="I3">Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Huang, Rongfeng" sort="Huang, Rongfeng" uniqKey="Huang R" first="Rongfeng" last="Huang">Rongfeng Huang</name><affiliation wicri:level="1"><nlm:aff id="I4">Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Tian, Yingchuan" sort="Tian, Yingchuan" uniqKey="Tian Y" first="Yingchuan" last="Tian">Yingchuan Tian</name><affiliation wicri:level="1"><nlm:aff id="I5">Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Su, Xiaohua" sort="Su, Xiaohua" uniqKey="Su X" first="Xiaohua" last="Su">Xiaohua Su</name><affiliation wicri:level="1"><nlm:aff id="I1">State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="I2">Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Beijing 100091, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></analytic><series><title level="j">BMC Genetics</title><idno type="eISSN">1471-2156</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>Transgenic poplar (<italic>Populus × euramericana '</italic>Guariento<italic>'</italic>) plants harboring five exogenous, stress-related genes exhibit increased tolerance to multiple stresses including drought, salt, waterlogging, and insect feeding, but the complex mechanisms underlying stress tolerance in these plants have not been elucidated. Here, we analyzed the differences in the transcriptomes of the transgenic poplar line D5-20 and the non-transgenic line D5-0 using high-throughput transcriptome sequencing techniques and elucidated the functions of the differentially expressed genes using various functional annotation methods.</p></sec><sec><title>Results</title><p>We generated 11.80 Gb of sequencing data containing 63, 430, 901 sequences, with an average length of 200 bp. The processed sequences were mapped to reference genome sequences of <italic>Populus trichocarpa</italic>. An average of 62.30% and 61.48% sequences could be aligned with the reference genomes for D5-20 and D5-0, respectively. We detected 11,352 (D5-20) and 11,372 expressed genes (D5-0), 7,624 (56.61%; D5-20) and 7,453 (65.54%; D5-0) of which could be functionally annotated. A total of 782 differentially expressed genes in D5-20 were identified compared with D5-0, including 628 up-regulated and 154 down-regulated genes. In addition, 196 genes with putative functions related to stress responses were also annotated. Gene Ontology (GO) analysis revealed that 346 differentially expressed genes are mainly involved in 67 biological functions, such as DNA binding and nucleus. KEGG annotation revealed that 36 genes (21 up-regulated and 15 down-regulated) were enriched in 51 biological pathways, 9 of which are linked to glucose metabolism. KOG functional classification revealed that 475 genes were enriched in 23 types of KOG functions.</p></sec><sec><title>Conclusion</title><p>These results suggest that the transferred exogenous genes altered the expression of stress (biotic and abiotic) response genes, which were distributed in different metabolic pathways and were linked to some extent. Our results provide a theoretic basis for investigating the functional mechanisms of exogenous genes in transgenic plants.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Walter, C" uniqKey="Walter C">C Walter</name></author><author><name sortKey="Fladung, M" uniqKey="Fladung M">M Fladung</name></author><author><name sortKey="Boerjan, W" uniqKey="Boerjan W">W Boerjan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bartels, D" uniqKey="Bartels D">D Bartels</name></author><author><name sortKey="Sunkar, R" uniqKey="Sunkar R">R Sunkar</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Li, Y" uniqKey="Li Y">Y Li</name></author><author><name sortKey="Su, X" uniqKey="Su X">X Su</name></author><author><name sortKey="Zhang, B" uniqKey="Zhang B">B Zhang</name></author><author><name sortKey="Zhang, Z" uniqKey="Zhang Z">Z 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Zanmin" sort="Hu, Zanmin" uniqKey="Hu Z" first="Zanmin" last="Hu">Zanmin Hu</name><name sortKey="Huang, Qinjun" sort="Huang, Qinjun" uniqKey="Huang Q" first="Qinjun" last="Huang">Qinjun Huang</name><name sortKey="Huang, Qinjun" sort="Huang, Qinjun" uniqKey="Huang Q" first="Qinjun" last="Huang">Qinjun Huang</name><name sortKey="Huang, Rongfeng" sort="Huang, Rongfeng" uniqKey="Huang R" first="Rongfeng" last="Huang">Rongfeng Huang</name><name sortKey="Su, Xiaohua" sort="Su, Xiaohua" uniqKey="Su X" first="Xiaohua" last="Su">Xiaohua Su</name><name sortKey="Su, Xiaohua" sort="Su, Xiaohua" uniqKey="Su X" first="Xiaohua" last="Su">Xiaohua Su</name><name sortKey="Tian, Yingchuan" sort="Tian, Yingchuan" uniqKey="Tian Y" first="Yingchuan" last="Tian">Yingchuan Tian</name><name sortKey="Zhang, Bingyu" sort="Zhang, Bingyu" uniqKey="Zhang B" first="Bingyu" last="Zhang">Bingyu Zhang</name><name sortKey="Zhang, Bingyu" sort="Zhang, Bingyu" uniqKey="Zhang B" first="Bingyu" last="Zhang">Bingyu Zhang</name><name sortKey="Zhang, Weixi" sort="Zhang, Weixi" uniqKey="Zhang W" first="Weixi" last="Zhang">Weixi Zhang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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