De novo transcriptome analysis reveals insights into dynamic homeostasis regulation of somatic embryogenesis in upland cotton (G. hirsutum L.)
Identifieur interne : 000261 ( Main/Exploration ); précédent : 000260; suivant : 000262De novo transcriptome analysis reveals insights into dynamic homeostasis regulation of somatic embryogenesis in upland cotton (G. hirsutum L.)
Auteurs : Wen-Han Cheng ; Hua-Guo Zhu ; Wen-Gang Tian ; Shou-Hong Zhu ; Xian-Peng Xiong ; Yu-Qiang Sun ; Qian-Hao Zhu [Australie] ; Jie SunSource :
- Plant Molecular Biology [ 0167-4412 ] ; 2016.
Abstract
Plant regeneration via somatic embryogenesis (SE) is the key step for genetic improvement of cotton (
The online version of this article (doi:10.1007/s11103-016-0511-6) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1007/s11103-016-0511-6
PubMed: 27511192
PubMed Central: 5040755
Affiliations:
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<author><name sortKey="Cheng, Wen Han" sort="Cheng, Wen Han" uniqKey="Cheng W" first="Wen-Han" last="Cheng">Wen-Han Cheng</name>
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<author><name sortKey="Sun, Jie" sort="Sun, Jie" uniqKey="Sun J" first="Jie" last="Sun">Jie Sun</name>
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<series><title level="j">Plant Molecular Biology</title>
<idno type="ISSN">0167-4412</idno>
<idno type="eISSN">1573-5028</idno>
<imprint><date when="2016">2016</date>
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<front><div type="abstract" xml:lang="en"><p>Plant regeneration via somatic embryogenesis (SE) is the key step for genetic improvement of cotton (<italic>Gossypium hirsutum</italic>
L.) through genetic engineering mediated by <italic>Agrobacteria</italic>
, but the molecular mechanisms underlying SE in cotton is still unclear. Here, RNA-Sequencing was used to analyze the genes expressed during SE and their expression dynamics using RNAs isolated from non-embryogenic callus (NEC), embryogenic callus (EC) and somatic embryos (SEs). A total of 101, 670 unigenes were de novo assembled. The genes differentially expressed (DEGs) amongst NEC, EC and SEs were identified, annotated and classified. More DEGs were found between SEs and EC than between EC and NEC. A significant number of DEGs were related to hormone homeostasis, stress and ROS responses, and metabolism of polyamines. To confirm the expression dynamics of selected DEGs involved in various pathways, experiments were set up to investigate the effects of hormones (Indole-3-butytric acid, IBA; Kinetin, KT), polyamines, H<sub>2</sub>
O<sub>2</sub>
and stresses on SE. Our results showed that exogenous application of IBA and KT positively regulated the development of EC and SEs, and that polyamines and H<sub>2</sub>
O<sub>2</sub>
promoted the conversion of EC into SEs. Furthermore, we found that low and moderate stress is beneficial for proliferation of EC and SEs formation. Together, our global analysis of transcriptomic dynamics reveals that hormone homeostasis, polyamines, and stress response synergistically regulating SE in cotton.</p>
<sec><title>Electronic supplementary material</title>
<p>The online version of this article (doi:10.1007/s11103-016-0511-6) contains supplementary material, which is available to authorized users.</p>
</sec>
</div>
</front>
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<name sortKey="Sun, Jie" sort="Sun, Jie" uniqKey="Sun J" first="Jie" last="Sun">Jie Sun</name>
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