Sequence diversity among badnavirus isolates infecting black pepper and related species in India
Identifieur interne : 000928 ( Main/Curation ); précédent : 000927; suivant : 000929Sequence diversity among badnavirus isolates infecting black pepper and related species in India
Auteurs : A. I. Bhat ; Shina Sasi ; K. A. Revathy ; K. P. Deeshma ; K. V. SajiSource :
- VirusDisease [ 2347-3584 ] ; 2014.
Abstract
The badnavirus, piper yellow mottle virus (PYMoV) is known to infect black pepper (
Url:
DOI: 10.1007/s13337-014-0221-0
PubMed: 25674613
PubMed Central: 4188196
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: Pour aller vers cette notice dans l'étape Curation :000488
- to stream Pmc, to step Curation: Pour aller vers cette notice dans l'étape Curation :000487
- to stream Pmc, to step Checkpoint: Pour aller vers cette notice dans l'étape Curation :000710
- to stream Ncbi, to step Merge: Pour aller vers cette notice dans l'étape Curation :001A01
- to stream Ncbi, to step Curation: Pour aller vers cette notice dans l'étape Curation :001A01
- to stream Ncbi, to step Checkpoint: Pour aller vers cette notice dans l'étape Curation :001A01
- to stream Main, to step Merge: Pour aller vers cette notice dans l'étape Curation :000928
Links to Exploration step
PMC:4188196Curation
No country items
A. I. Bhat<affiliation><nlm:aff id="Aff1">Division of Crop Protection, Indian Institute of Spices Research, Marikunnu PO, Kozhikode, 673 012 Kerala India</nlm:aff>
<wicri:noCountry code="subfield">673 012 Kerala India</wicri:noCountry>
</affiliation>
<affiliation><nlm:aff id="Aff1">Division of Crop Protection, Indian Institute of Spices Research, Marikunnu PO, Kozhikode, 673 012 Kerala India</nlm:aff>
<wicri:noCountry code="subfield">673 012 Kerala India</wicri:noCountry>
</affiliation>
<affiliation><nlm:aff id="Aff1">Division of Crop Protection, Indian Institute of Spices Research, Marikunnu PO, Kozhikode, 673 012 Kerala India</nlm:aff>
<wicri:noCountry code="subfield">673 012 Kerala India</wicri:noCountry>
</affiliation>
<affiliation><nlm:aff id="Aff1">Division of Crop Protection, Indian Institute of Spices Research, Marikunnu PO, Kozhikode, 673 012 Kerala India</nlm:aff>
<wicri:noCountry code="subfield">673 012 Kerala India</wicri:noCountry>
</affiliation>
<affiliation><nlm:aff id="Aff1">Division of Crop Protection, Indian Institute of Spices Research, Marikunnu PO, Kozhikode, 673 012 Kerala India</nlm:aff>
<wicri:noCountry code="subfield">673 012 Kerala India</wicri:noCountry>
</affiliation>
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Sequence diversity among badnavirus isolate<italic>s</italic>
infecting black pepper and related species in India</title>
<author><name sortKey="Bhat, A I" sort="Bhat, A I" uniqKey="Bhat A" first="A. I." last="Bhat">A. I. Bhat</name>
<affiliation><nlm:aff id="Aff1">Division of Crop Protection, Indian Institute of Spices Research, Marikunnu PO, Kozhikode, 673 012 Kerala India</nlm:aff>
<wicri:noCountry code="subfield">673 012 Kerala India</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Sasi, Shina" sort="Sasi, Shina" uniqKey="Sasi S" first="Shina" last="Sasi">Shina Sasi</name>
<affiliation><nlm:aff id="Aff1">Division of Crop Protection, Indian Institute of Spices Research, Marikunnu PO, Kozhikode, 673 012 Kerala India</nlm:aff>
<wicri:noCountry code="subfield">673 012 Kerala India</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Revathy, K A" sort="Revathy, K A" uniqKey="Revathy K" first="K. A." last="Revathy">K. A. Revathy</name>
<affiliation><nlm:aff id="Aff1">Division of Crop Protection, Indian Institute of Spices Research, Marikunnu PO, Kozhikode, 673 012 Kerala India</nlm:aff>
<wicri:noCountry code="subfield">673 012 Kerala India</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Deeshma, K P" sort="Deeshma, K P" uniqKey="Deeshma K" first="K. P." last="Deeshma">K. P. Deeshma</name>
<affiliation><nlm:aff id="Aff1">Division of Crop Protection, Indian Institute of Spices Research, Marikunnu PO, Kozhikode, 673 012 Kerala India</nlm:aff>
<wicri:noCountry code="subfield">673 012 Kerala India</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Saji, K V" sort="Saji, K V" uniqKey="Saji K" first="K. V." last="Saji">K. V. Saji</name>
<affiliation><nlm:aff id="Aff1">Division of Crop Protection, Indian Institute of Spices Research, Marikunnu PO, Kozhikode, 673 012 Kerala India</nlm:aff>
<wicri:noCountry code="subfield">673 012 Kerala India</wicri:noCountry>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">25674613</idno>
<idno type="pmc">4188196</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4188196</idno>
<idno type="RBID">PMC:4188196</idno>
<idno type="doi">10.1007/s13337-014-0221-0</idno>
<date when="2014">2014</date>
<idno type="wicri:Area/Pmc/Corpus">000488</idno>
<idno type="wicri:Area/Pmc/Curation">000487</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000710</idno>
<idno type="wicri:Area/Ncbi/Merge">001A01</idno>
<idno type="wicri:Area/Ncbi/Curation">001A01</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">001A01</idno>
<idno type="wicri:doubleKey">2347-3584:2014:Bhat A:sequence:diversity:among</idno>
<idno type="wicri:Area/Main/Merge">000928</idno>
<idno type="wicri:Area/Main/Curation">000928</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Sequence diversity among badnavirus isolate<italic>s</italic>
infecting black pepper and related species in India</title>
<author><name sortKey="Bhat, A I" sort="Bhat, A I" uniqKey="Bhat A" first="A. I." last="Bhat">A. I. Bhat</name>
<affiliation><nlm:aff id="Aff1">Division of Crop Protection, Indian Institute of Spices Research, Marikunnu PO, Kozhikode, 673 012 Kerala India</nlm:aff>
<wicri:noCountry code="subfield">673 012 Kerala India</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Sasi, Shina" sort="Sasi, Shina" uniqKey="Sasi S" first="Shina" last="Sasi">Shina Sasi</name>
<affiliation><nlm:aff id="Aff1">Division of Crop Protection, Indian Institute of Spices Research, Marikunnu PO, Kozhikode, 673 012 Kerala India</nlm:aff>
<wicri:noCountry code="subfield">673 012 Kerala India</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Revathy, K A" sort="Revathy, K A" uniqKey="Revathy K" first="K. A." last="Revathy">K. A. Revathy</name>
<affiliation><nlm:aff id="Aff1">Division of Crop Protection, Indian Institute of Spices Research, Marikunnu PO, Kozhikode, 673 012 Kerala India</nlm:aff>
<wicri:noCountry code="subfield">673 012 Kerala India</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Deeshma, K P" sort="Deeshma, K P" uniqKey="Deeshma K" first="K. P." last="Deeshma">K. P. Deeshma</name>
<affiliation><nlm:aff id="Aff1">Division of Crop Protection, Indian Institute of Spices Research, Marikunnu PO, Kozhikode, 673 012 Kerala India</nlm:aff>
<wicri:noCountry code="subfield">673 012 Kerala India</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Saji, K V" sort="Saji, K V" uniqKey="Saji K" first="K. V." last="Saji">K. V. Saji</name>
<affiliation><nlm:aff id="Aff1">Division of Crop Protection, Indian Institute of Spices Research, Marikunnu PO, Kozhikode, 673 012 Kerala India</nlm:aff>
<wicri:noCountry code="subfield">673 012 Kerala India</wicri:noCountry>
</affiliation>
</author>
</analytic>
<series><title level="j">VirusDisease</title>
<idno type="ISSN">2347-3584</idno>
<idno type="eISSN">2347-3517</idno>
<imprint><date when="2014">2014</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>The badnavirus, piper yellow mottle virus (PYMoV) is known to infect black pepper (<italic>Piper nigrum</italic>
), betelvine (<italic>P. betle</italic>
) and Indian long pepper (<italic>P. longum</italic>
) in India and other parts of the world. Occurrence of PYMoV or other badnaviruses in other species of <italic>Piper</italic>
and its variability is not reported so far. We have analysed sequence variability in the conserved putative reverse transcriptase (RT)/ribonuclease H (RNase H) coding region of the virus using specific badnavirus primers from 13 virus isolates of black pepper collected from different cultivars and regions and one isolate each from 23 other species of <italic>Piper.</italic>
Of these, four species failed to produce expected amplicon while amplicon from four other species showed more similarities to plant sequences than to badnaviruses. Of the remaining, isolates from black pepper, <italic>P. argyrophyllum, P. attenuatum</italic>
, <italic>P. barberi</italic>
, <italic>P. betle</italic>
, <italic>P. colubrinum</italic>
, <italic>P. galeatum</italic>
, <italic>P. longum</italic>
, <italic>P. ornatum</italic>
, <italic>P. sarmentosum</italic>
and <italic>P. trichostachyon</italic>
showed an identity of >85 % at the nucleotide and >90 % at the amino acid level with PYMoV indicating that they are isolates of PYMoV. On the other hand high sequence variability of 21–43 % at nucleotide and 17–46 % at amino acid level compared to PYMoV was found among isolates infecting <italic>P. bababudani</italic>
, <italic>P. chaba</italic>
, <italic>P. peepuloides, P. mullesua</italic>
and <italic>P. thomsonii</italic>
suggesting the presence of new badnaviruses. Phylogenetic analyses showed close clustering of all PYMoV isolates that were well separated from other known badnaviruses. This is the first report of occurrence of PYMoV in eight <italic>Piper</italic>
spp and likely occurrence of four new species in five <italic>Piper</italic>
spp.</p>
</div>
</front>
</TEI>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Bois/explor/OrangerV1/Data/Main/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000928 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Curation/biblio.hfd -nk 000928 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Wicri/Bois |area= OrangerV1 |flux= Main |étape= Curation |type= RBID |clé= PMC:4188196 |texte= Sequence diversity among badnavirus isolates infecting black pepper and related species in India }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Curation/RBID.i -Sk "pubmed:25674613" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Curation/biblio.hfd \ | NlmPubMed2Wicri -a OrangerV1
This area was generated with Dilib version V0.6.25. |