A unique RPW8-encoding class of genes that originated in early land plants and evolved through domain fission, fusion, and duplication
Identifieur interne : 000349 ( Main/Curation ); précédent : 000348; suivant : 000350A unique RPW8-encoding class of genes that originated in early land plants and evolved through domain fission, fusion, and duplication
Auteurs : Yan Zhong [République populaire de Chine] ; Zong-Ming Max Cheng [République populaire de Chine, États-Unis]Source :
- Scientific Reports [ 2045-2322 ] ; 2016.
Abstract
Duplication, lateral gene transfer, domain fusion/fission and
Url:
DOI: 10.1038/srep32923
PubMed: 27678195
PubMed Central: 5039405
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PMC:5039405Le document en format XML
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<author><name sortKey="Zhong, Yan" sort="Zhong, Yan" uniqKey="Zhong Y" first="Yan" last="Zhong">Yan Zhong</name>
<affiliation wicri:level="1"><nlm:aff id="a1"><institution>College of Horticulture, Nanjing Agricultural University</institution>
, Nanjing, 210095,<country>China</country>
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<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<author><name sortKey="Cheng, Zong Ming Max" sort="Cheng, Zong Ming Max" uniqKey="Cheng Z" first="Zong-Ming Max" last="Cheng">Zong-Ming Max Cheng</name>
<affiliation wicri:level="1"><nlm:aff id="a1"><institution>College of Horticulture, Nanjing Agricultural University</institution>
, Nanjing, 210095,<country>China</country>
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<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="a2"><institution>Department of Plant Science, University of Tennessee</institution>
, Knoxville, 37996,<country>USA</country>
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<country xml:lang="fr">États-Unis</country>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">A unique RPW8-encoding class of genes that originated in early land plants and evolved through domain fission, fusion, and duplication</title>
<author><name sortKey="Zhong, Yan" sort="Zhong, Yan" uniqKey="Zhong Y" first="Yan" last="Zhong">Yan Zhong</name>
<affiliation wicri:level="1"><nlm:aff id="a1"><institution>College of Horticulture, Nanjing Agricultural University</institution>
, Nanjing, 210095,<country>China</country>
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<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<author><name sortKey="Cheng, Zong Ming Max" sort="Cheng, Zong Ming Max" uniqKey="Cheng Z" first="Zong-Ming Max" last="Cheng">Zong-Ming Max Cheng</name>
<affiliation wicri:level="1"><nlm:aff id="a1"><institution>College of Horticulture, Nanjing Agricultural University</institution>
, Nanjing, 210095,<country>China</country>
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<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<affiliation wicri:level="1"><nlm:aff id="a2"><institution>Department of Plant Science, University of Tennessee</institution>
, Knoxville, 37996,<country>USA</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<series><title level="j">Scientific Reports</title>
<idno type="eISSN">2045-2322</idno>
<imprint><date when="2016">2016</date>
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<front><div type="abstract" xml:lang="en"><p>Duplication, lateral gene transfer, domain fusion/fission and <italic>de novo</italic>
domain creation play a key role in formation of initial common ancestral protein. Abundant protein diversities are produced by domain rearrangements, including fusions, fissions, duplications, and terminal domain losses. In this report, we explored the origin of the RPW8 domain and examined the domain rearrangements that have driven the evolution of RPW8-encoding genes in land plants. The RPW8 domain first emerged in the early land plant, <italic>Physcomitrella patens</italic>
, and it likely originated <italic>de novo</italic>
from a non-coding sequence or domain divergence after duplication. It was then incorporated into the NBS-LRR protein to create a main sub-class of RPW8-encoding genes, the RPW8-NBS-encoding genes. They evolved by a series of genetic events of domain fissions, fusions, and duplications. Many species-specific duplication events and tandemly duplicated clusters clearly demonstrated that species-specific and tandem duplications played important roles in expansion of RPW8-encoding genes, especially in gymnosperms and species of the Rosaceae. RPW8 domains with greater <italic>Ka</italic>
/<italic>Ks</italic>
values than those of the NBS domains indicated that they evolved faster than the NBS domains in RPW8-NBSs.</p>
</div>
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<biblStruct><analytic><author><name sortKey="Ju, C L" uniqKey="Ju C">C. L. Ju</name>
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