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Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus.

Identifieur interne : 001796 ( Main/Exploration ); précédent : 001795; suivant : 001797

Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus.

Auteurs : Kui Lin [République populaire de Chine] ; Erik Limpens [Pays-Bas] ; Zhonghua Zhang [République populaire de Chine] ; Sergey Ivanov [Pays-Bas] ; Diane G O. Saunders [Royaume-Uni] ; Desheng Mu [République populaire de Chine] ; Erli Pang [République populaire de Chine] ; Huifen Cao [République populaire de Chine] ; Hwangho Cha [République populaire de Chine] ; Tao Lin [République populaire de Chine] ; Qian Zhou [République populaire de Chine] ; Yi Shang [République populaire de Chine] ; Ying Li [République populaire de Chine] ; Trupti Sharma [Pays-Bas] ; Robin Van Velzen [Pays-Bas] ; Norbert De Ruijter [Pays-Bas] ; Duur K. Aanen [Pays-Bas] ; Joe Win [Royaume-Uni] ; Sophien Kamoun [Royaume-Uni] ; Ton Bisseling [Arabie saoudite] ; René Geurts [Pays-Bas] ; Sanwen Huang [République populaire de Chine]

Source :

RBID : pubmed:24415955

Descripteurs français

English descriptors

Abstract

Nuclei of arbuscular endomycorrhizal fungi have been described as highly diverse due to their asexual nature and absence of a single cell stage with only one nucleus. This has raised fundamental questions concerning speciation, selection and transmission of the genetic make-up to next generations. Although this concept has become textbook knowledge, it is only based on studying a few loci, including 45S rDNA. To provide a more comprehensive insight into the genetic makeup of arbuscular endomycorrhizal fungi, we applied de novo genome sequencing of individual nuclei of Rhizophagus irregularis. This revealed a surprisingly low level of polymorphism between nuclei. In contrast, within a nucleus, the 45S rDNA repeat unit turned out to be highly diverged. This finding demystifies a long-lasting hypothesis on the complex genetic makeup of arbuscular endomycorrhizal fungi. Subsequent genome assembly resulted in the first draft reference genome sequence of an arbuscular endomycorrhizal fungus. Its length is 141 Mbps, representing over 27,000 protein-coding gene models. We used the genomic sequence to reinvestigate the phylogenetic relationships of Rhizophagus irregularis with other fungal phyla. This unambiguously demonstrated that Glomeromycota are more closely related to Mucoromycotina than to its postulated sister Dikarya.

DOI: 10.1371/journal.pgen.1004078
PubMed: 24415955
PubMed Central: PMC3886924


Affiliations:


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Le document en format XML

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<name sortKey="Ivanov, Sergey" sort="Ivanov, Sergey" uniqKey="Ivanov S" first="Sergey" last="Ivanov">Sergey Ivanov</name>
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<name sortKey="Mu, Desheng" sort="Mu, Desheng" uniqKey="Mu D" first="Desheng" last="Mu">Desheng Mu</name>
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<name sortKey="Pang, Erli" sort="Pang, Erli" uniqKey="Pang E" first="Erli" last="Pang">Erli Pang</name>
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<nlm:affiliation>Laboratory of Computational Molecular Biology, College of Life Sciences, Beijing Normal University, Beijing, China.</nlm:affiliation>
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<name sortKey="Cao, Huifen" sort="Cao, Huifen" uniqKey="Cao H" first="Huifen" last="Cao">Huifen Cao</name>
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<nlm:affiliation>Laboratory of Computational Molecular Biology, College of Life Sciences, Beijing Normal University, Beijing, China.</nlm:affiliation>
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<name sortKey="Cha, Hwangho" sort="Cha, Hwangho" uniqKey="Cha H" first="Hwangho" last="Cha">Hwangho Cha</name>
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<nlm:affiliation>Laboratory of Computational Molecular Biology, College of Life Sciences, Beijing Normal University, Beijing, China.</nlm:affiliation>
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<name sortKey="Lin, Tao" sort="Lin, Tao" uniqKey="Lin T" first="Tao" last="Lin">Tao Lin</name>
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<name sortKey="Kamoun, Sophien" sort="Kamoun, Sophien" uniqKey="Kamoun S" first="Sophien" last="Kamoun">Sophien Kamoun</name>
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<name sortKey="Huang, Sanwen" sort="Huang, Sanwen" uniqKey="Huang S" first="Sanwen" last="Huang">Sanwen Huang</name>
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<term>DNA, Ribosomal (genetics)</term>
<term>Genome, Fungal (MeSH)</term>
<term>High-Throughput Nucleotide Sequencing (MeSH)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Mycorrhizae (genetics)</term>
<term>Open Reading Frames (genetics)</term>
<term>Phylogeny (MeSH)</term>
<term>Spores, Fungal (genetics)</term>
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<term>ADN ribosomique (génétique)</term>
<term>Cadres ouverts de lecture (génétique)</term>
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<term>Mycorhizes (génétique)</term>
<term>Noyau de la cellule (génétique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Spores fongiques (génétique)</term>
<term>Séquence nucléotidique (MeSH)</term>
<term>Séquençage nucléotidique à haut débit (MeSH)</term>
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<term>Spores, Fungal</term>
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<div type="abstract" xml:lang="en">Nuclei of arbuscular endomycorrhizal fungi have been described as highly diverse due to their asexual nature and absence of a single cell stage with only one nucleus. This has raised fundamental questions concerning speciation, selection and transmission of the genetic make-up to next generations. Although this concept has become textbook knowledge, it is only based on studying a few loci, including 45S rDNA. To provide a more comprehensive insight into the genetic makeup of arbuscular endomycorrhizal fungi, we applied de novo genome sequencing of individual nuclei of Rhizophagus irregularis. This revealed a surprisingly low level of polymorphism between nuclei. In contrast, within a nucleus, the 45S rDNA repeat unit turned out to be highly diverged. This finding demystifies a long-lasting hypothesis on the complex genetic makeup of arbuscular endomycorrhizal fungi. Subsequent genome assembly resulted in the first draft reference genome sequence of an arbuscular endomycorrhizal fungus. Its length is 141 Mbps, representing over 27,000 protein-coding gene models. We used the genomic sequence to reinvestigate the phylogenetic relationships of Rhizophagus irregularis with other fungal phyla. This unambiguously demonstrated that Glomeromycota are more closely related to Mucoromycotina than to its postulated sister Dikarya. </div>
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<Year>2014</Year>
<Month>06</Month>
<Day>17</Day>
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<Year>2020</Year>
<Month>03</Month>
<Day>05</Day>
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<Volume>10</Volume>
<Issue>1</Issue>
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<AbstractText>Nuclei of arbuscular endomycorrhizal fungi have been described as highly diverse due to their asexual nature and absence of a single cell stage with only one nucleus. This has raised fundamental questions concerning speciation, selection and transmission of the genetic make-up to next generations. Although this concept has become textbook knowledge, it is only based on studying a few loci, including 45S rDNA. To provide a more comprehensive insight into the genetic makeup of arbuscular endomycorrhizal fungi, we applied de novo genome sequencing of individual nuclei of Rhizophagus irregularis. This revealed a surprisingly low level of polymorphism between nuclei. In contrast, within a nucleus, the 45S rDNA repeat unit turned out to be highly diverged. This finding demystifies a long-lasting hypothesis on the complex genetic makeup of arbuscular endomycorrhizal fungi. Subsequent genome assembly resulted in the first draft reference genome sequence of an arbuscular endomycorrhizal fungus. Its length is 141 Mbps, representing over 27,000 protein-coding gene models. We used the genomic sequence to reinvestigate the phylogenetic relationships of Rhizophagus irregularis with other fungal phyla. This unambiguously demonstrated that Glomeromycota are more closely related to Mucoromycotina than to its postulated sister Dikarya. </AbstractText>
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<Month>08</Month>
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<Year>2013</Year>
<Month>11</Month>
<Day>18</Day>
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<Day>14</Day>
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<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">24415955</ArticleId>
<ArticleId IdType="doi">10.1371/journal.pgen.1004078</ArticleId>
<ArticleId IdType="pii">PGENETICS-D-13-02134</ArticleId>
<ArticleId IdType="pmc">PMC3886924</ArticleId>
</ArticleIdList>
<ReferenceList>
<Reference>
<Citation>BMC Evol Biol. 2006 Sep 29;6:74</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17010206</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2008 Nov 1;24(21):2438-44</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18728043</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Brief Bioinform. 2008 Jul;9(4):286-98</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18372315</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2006 Jul 1;22(13):1658-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16731699</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2001 Dec;17(12):1246-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11751242</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>New Phytol. 2011 Dec;192(4):794-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21988748</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Evol Biol. 2011 Jul 08;11:195</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21740557</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>New Phytol. 2012 Feb;193(3):755-69</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22092242</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Syst Biol. 2008 Oct;57(5):758-71</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18853362</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Biol Evol. 2010 Nov;27(11):2474-86</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20566475</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2006 Nov 2;444(7115):97-101</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17080091</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2012;7(1):e29847</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22238666</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genetics. 2006 Oct;174(2):817-27</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16888330</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>New Phytol. 2009 Mar;181(4):924-37</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19140939</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Heredity (Edinb). 2001 Oct;87(Pt 4):449-55</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11737293</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Mol Biol. 2000 Jul 21;300(4):1005-16</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10891285</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Brief Bioinform. 2002 Sep;3(3):265-74</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">12230035</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2008 Mar 1;24(5):637-44</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18218656</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Fungal Genet Biol. 2006 Jan;43(1):20-33</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16380277</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Gigascience. 2012 Dec 27;1(1):18</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23587118</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cytogenet Genome Res. 2005;110(1-4):372-82</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16093689</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>New Phytol. 2009;183(4):1176-87</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19496945</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Heredity (Edinb). 2001 Aug;87(Pt 2):243-53</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11703516</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genetica. 2006 Sep-Nov;128(1-3):455-69</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17028973</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2005 Jun;21 Suppl 1:i152-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15961452</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nucleic Acids Res. 2001 Jan 1;29(1):37-40</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11125043</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cytogenet Genome Res. 2005;110(1-4):462-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16093699</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W116-20</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15980438</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Evol Biol. 2006 Mar 10;6:21</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16529655</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2005 Jun;21 Suppl 1:i351-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15961478</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genetics. 2007 Feb;175(2):477-85</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17322354</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Mol Evol. 2002 Jul;55(1):65-73</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">12165843</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mycologia. 2006 Nov-Dec;98(6):885-95</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17486965</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2001 Dec 13;414(6865):745-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11742398</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2009 Oct 15;25(20):2632-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19671691</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell Mol Life Sci. 2004 Jun;61(11):1341-53</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15170512</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nucleic Acids Res. 2003 Oct 1;31(19):5654-66</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">14500829</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2013 Jan 15;29(2):275-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23172865</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nucleic Acids Res. 2005 Jan 1;33(Database issue):D154-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15608167</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome Res. 2000 Apr;10(4):511-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10779490</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Evol Biol. 2009 Jan 15;9:13</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19146661</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2007 May 1;23(9):1061-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17332020</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2008 Mar 6;452(7183):88-92</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18322534</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Annu Rev Genet. 2010;44:271-92</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20822441</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2005 Apr 21;434(7036):980-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15846337</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Curr Biol. 2013 Aug 19;23(16):1548-53</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23932404</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Curr Biol. 2010 Jul 13;20(13):1216-21</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20541408</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Evol Biol. 2011 Feb 24;11:51</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21349193</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome Res. 2003 Sep;13(9):2178-89</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">12952885</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2004 Feb 19;427(6976):733-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">14973485</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome Biol Evol. 2011;3:950-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21876220</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2005 Jan 13;433(7022):160-3</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15650740</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2005 Sep 15;21(18):3674-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16081474</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>New Phytol. 2008;180(4):747-50</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19138232</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2010 Apr 15;464(7291):1033-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20348908</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Rev Microbiol. 2008 Oct;6(10):763-75</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18794914</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>New Phytol. 2009;183(1):200-11</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19368666</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome Res. 2008 Dec;18(12):1979-90</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18757608</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proc Natl Acad Sci U S A. 2012 Apr 17;109(16):6241-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22454494</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Pathog. 2011 Nov;7(11):e1002338</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22072962</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Curr Biol. 2011 Jul 26;21(14):1204-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21757354</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Database (Oxford). 2011 Mar 29;2011:bar009</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21447597</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2011 Apr 7;472(7341):90-4</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21399628</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Annu Rev Phytopathol. 2009;47:233-63</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19400631</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>EMBO Rep. 2000 Nov;1(5):411-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11258480</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Genet. 2009 Jul;5(7):e1000549</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19578406</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Fungal Genet Biol. 2012 May;49(5):398-404</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22445959</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nucleic Acids Res. 1997 Sep 1;25(17):3389-402</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">9254694</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2006 Nov 1;22(21):2688-90</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16928733</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nucleic Acids Res. 2002 Apr 1;30(7):1575-84</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11917018</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Biol Evol. 1997 Jan;14(1):81-90</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">9000756</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Evol Biol. 2010 Jul;23(7):1519-27</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20492090</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2009 Sep 17;461(7262):393-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19741609</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mycologia. 2011 Mar-Apr;103(2):307-16</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21139032</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nucleic Acids Res. 2007 Jul;35(Web Server issue):W265-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17485477</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome Biol. 2008 Jan 11;9(1):R7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18190707</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Genet. 2012 Jan 08;44(2):226-32</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22231483</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nucleic Acids Res. 2007 Jul;35(Web Server issue):W585-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17517783</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome Res. 2003 Jul;13(7):1675-85</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">12840044</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mycorrhiza. 2013 Oct;23(7):515-31</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23558516</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nucleic Acids Res. 2008 May;36(8):2630-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18344523</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2004 Nov 1;20(16):2878-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15145805</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2003 Apr 24;422(6934):859-68</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">12712197</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Biol. 2012 May 31;10:47</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22651672</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2006 Oct 19;443(7113):818-22</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17051209</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Evol Bioinform Online. 2008 May 26;4:193-201</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19204817</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Mol Biol. 1990 Oct 5;215(3):403-10</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">2231712</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Bioinformatics. 2004 May 14;5:59</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15144565</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2008 Feb 14;451(7180):783-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18273011</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
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<country>
<li>Arabie saoudite</li>
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<region>
<li>Guangdong</li>
<li>Gueldre (province)</li>
</region>
<settlement>
<li>Pékin</li>
<li>Shenzhen</li>
<li>Wageningue</li>
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<li>Université de Wageningue</li>
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<name sortKey="Lin, Tao" sort="Lin, Tao" uniqKey="Lin T" first="Tao" last="Lin">Tao Lin</name>
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<name sortKey="Pang, Erli" sort="Pang, Erli" uniqKey="Pang E" first="Erli" last="Pang">Erli Pang</name>
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