Repetitive DNA sequences include retrotransposons in genomes of the Glomeromycota.
Identifieur interne : 003108 ( Main/Exploration ); précédent : 003107; suivant : 003109Repetitive DNA sequences include retrotransposons in genomes of the Glomeromycota.
Auteurs : Armelle Gollotte [France] ; Floriane L'Haridon ; Odile Chatagnier ; Guillaume Wettstein ; Christine Arnould ; Diederik Van Tuinen ; Vivienne Gianinazzi-PearsonSource :
- Genetica [ 0016-6707 ]
Descripteurs français
- KwdFr :
- ADN fongique (génétique), Amorces ADN (génétique), Banque génomique (MeSH), Données de séquences moléculaires (MeSH), Expression des gènes (MeSH), Génome fongique (MeSH), Mycorhizes (génétique), Polymorphisme génétique (MeSH), Rétroéléments (génétique), Similitude de séquences d'acides nucléiques (MeSH), Spécificité d'espèce (MeSH), Séquence nucléotidique (MeSH), Séquences répétées d'acides nucléiques (MeSH).
- MESH :
- génétique : ADN fongique, Amorces ADN, Mycorhizes, Rétroéléments.
- Banque génomique, Données de séquences moléculaires, Expression des gènes, Génome fongique, Polymorphisme génétique, Similitude de séquences d'acides nucléiques, Spécificité d'espèce, Séquence nucléotidique, Séquences répétées d'acides nucléiques.
English descriptors
- KwdEn :
- Base Sequence (MeSH), DNA Primers (genetics), DNA, Fungal (genetics), Gene Expression (MeSH), Genome, Fungal (MeSH), Genomic Library (MeSH), Molecular Sequence Data (MeSH), Mycorrhizae (genetics), Polymorphism, Genetic (MeSH), Repetitive Sequences, Nucleic Acid (MeSH), Retroelements (genetics), Sequence Homology, Nucleic Acid (MeSH), Species Specificity (MeSH).
- MESH :
- chemical , genetics : DNA Primers, DNA, Fungal, Retroelements.
- genetics : Mycorrhizae.
- Base Sequence, Gene Expression, Genome, Fungal, Genomic Library, Molecular Sequence Data, Polymorphism, Genetic, Repetitive Sequences, Nucleic Acid, Sequence Homology, Nucleic Acid, Species Specificity.
Abstract
Twenty-five repetitive elements are first described in the genomes of the arbuscular mycorrhizal (AM) fungi Gigaspora margarita, Gig. rosea and Glomus mosseae. Nineteen repetitive DNA sequences isolated by genomic library screening and four by self-priming PCR had no homology to known DNA sequences, except for two Gig. margarita sequences and one Gig. rosea sequence which showed amino acid similarity to retrotransposons. Part of the Gig. rosea sequence was also similar to a DNA transposon. Two other retrotransposon sequences were isolated using PCR targeting of reverse transcriptase and ribonuclease H domains. Evidence is provided for three gypsy-like LTR retrotransposon and two non-LTR retrotransposon sequences in the AM fungal genomes. Four contain stop codons indicating that they cannot be active. Expression of three retrotransposons was not detected in germinating spores or intraradical hyphae of Gig. margarita. Southern blot analyses indicated that these three sequences are dispersed in the genome and that two are methylated. Sequence analysis of different GmarLTR1 copies showed they have undergone mutations by transitions, which may have been induced by cytosine methylation. Transposable elements may have played a major role in shaping genome structure and size during evolution of the Glomeromycota.
DOI: 10.1007/s10709-006-0019-0
PubMed: 17028973
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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F" first="Floriane" last="L'Haridon">Floriane L'Haridon</name></author><author><name sortKey="Chatagnier, Odile" sort="Chatagnier, Odile" uniqKey="Chatagnier O" first="Odile" last="Chatagnier">Odile Chatagnier</name></author><author><name sortKey="Wettstein, Guillaume" sort="Wettstein, Guillaume" uniqKey="Wettstein G" first="Guillaume" last="Wettstein">Guillaume Wettstein</name></author><author><name sortKey="Arnould, Christine" sort="Arnould, Christine" uniqKey="Arnould C" first="Christine" last="Arnould">Christine Arnould</name></author><author><name sortKey="Van Tuinen, Diederik" sort="Van Tuinen, Diederik" uniqKey="Van Tuinen D" first="Diederik" last="Van Tuinen">Diederik Van Tuinen</name></author><author><name sortKey="Gianinazzi Pearson, Vivienne" sort="Gianinazzi Pearson, Vivienne" uniqKey="Gianinazzi Pearson V" first="Vivienne" last="Gianinazzi-Pearson">Vivienne Gianinazzi-Pearson</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date 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gollotte@epoisses.inra.fr</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>UMR 1088 INRA/5184 CNRS/Université de Bourgogne Plante-Microbe-Environnement, INRA-CMSE, BP 86510, 21065 Dijon Cedex</wicri:regionArea><placeName><region type="region" nuts="2">Bourgogne-Franche-Comté</region><region type="old region" nuts="2">Bourgogne</region><settlement type="city">Dijon</settlement></placeName></affiliation></author><author><name sortKey="L Haridon, Floriane" sort="L Haridon, Floriane" uniqKey="L Haridon F" first="Floriane" last="L'Haridon">Floriane L'Haridon</name></author><author><name sortKey="Chatagnier, Odile" sort="Chatagnier, Odile" uniqKey="Chatagnier O" first="Odile" last="Chatagnier">Odile Chatagnier</name></author><author><name sortKey="Wettstein, Guillaume" sort="Wettstein, Guillaume" uniqKey="Wettstein G" first="Guillaume" last="Wettstein">Guillaume Wettstein</name></author><author><name sortKey="Arnould, Christine" sort="Arnould, Christine" uniqKey="Arnould C" first="Christine" last="Arnould">Christine Arnould</name></author><author><name sortKey="Van Tuinen, Diederik" sort="Van Tuinen, Diederik" uniqKey="Van Tuinen D" first="Diederik" last="Van Tuinen">Diederik Van Tuinen</name></author><author><name sortKey="Gianinazzi Pearson, Vivienne" sort="Gianinazzi Pearson, Vivienne" uniqKey="Gianinazzi Pearson V" first="Vivienne" last="Gianinazzi-Pearson">Vivienne Gianinazzi-Pearson</name></author></analytic><series><title level="j">Genetica</title><idno type="ISSN">0016-6707</idno></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Sequence (MeSH)</term><term>DNA Primers (genetics)</term><term>DNA, Fungal (genetics)</term><term>Gene Expression (MeSH)</term><term>Genome, Fungal (MeSH)</term><term>Genomic Library (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Mycorrhizae (genetics)</term><term>Polymorphism, Genetic (MeSH)</term><term>Repetitive 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nucléiques</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Twenty-five repetitive elements are first described in the genomes of the arbuscular mycorrhizal (AM) fungi Gigaspora margarita, Gig. rosea and Glomus mosseae. Nineteen repetitive DNA sequences isolated by genomic library screening and four by self-priming PCR had no homology to known DNA sequences, except for two Gig. margarita sequences and one Gig. rosea sequence which showed amino acid similarity to retrotransposons. Part of the Gig. rosea sequence was also similar to a DNA transposon. Two other retrotransposon sequences were isolated using PCR targeting of reverse transcriptase and ribonuclease H domains. Evidence is provided for three gypsy-like LTR retrotransposon and two non-LTR retrotransposon sequences in the AM fungal genomes. Four contain stop codons indicating that they cannot be active. Expression of three retrotransposons was not detected in germinating spores or intraradical hyphae of Gig. margarita. Southern blot analyses indicated that these three sequences are dispersed in the genome and that two are methylated. Sequence analysis of different GmarLTR1 copies showed they have undergone mutations by transitions, which may have been induced by cytosine methylation. Transposable elements may have played a major role in shaping genome structure and size during evolution of the Glomeromycota.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17028973</PMID><DateCompleted><Year>2007</Year><Month>01</Month><Day>16</Day></DateCompleted><DateRevised><Year>2006</Year><Month>10</Month><Day>09</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0016-6707</ISSN><JournalIssue CitedMedium="Print"><Volume>128</Volume><Issue>1-3</Issue><PubDate><MedlineDate>2006 Sep-Nov</MedlineDate></PubDate></JournalIssue><Title>Genetica</Title><ISOAbbreviation>Genetica</ISOAbbreviation></Journal><ArticleTitle>Repetitive DNA sequences include retrotransposons in genomes of the Glomeromycota.</ArticleTitle><Pagination><MedlinePgn>455-69</MedlinePgn></Pagination><Abstract><AbstractText>Twenty-five repetitive elements are first described in the genomes of the arbuscular mycorrhizal (AM) fungi Gigaspora margarita, Gig. rosea and Glomus mosseae. Nineteen repetitive DNA sequences isolated by genomic library screening and four by self-priming PCR had no homology to known DNA sequences, except for two Gig. margarita sequences and one Gig. rosea sequence which showed amino acid similarity to retrotransposons. Part of the Gig. rosea sequence was also similar to a DNA transposon. Two other retrotransposon sequences were isolated using PCR targeting of reverse transcriptase and ribonuclease H domains. Evidence is provided for three gypsy-like LTR retrotransposon and two non-LTR retrotransposon sequences in the AM fungal genomes. Four contain stop codons indicating that they cannot be active. Expression of three retrotransposons was not detected in germinating spores or intraradical hyphae of Gig. margarita. Southern blot analyses indicated that these three sequences are dispersed in the genome and that two are methylated. Sequence analysis of different GmarLTR1 copies showed they have undergone mutations by transitions, which may have been induced by cytosine methylation. Transposable elements may have played a major role in shaping genome structure and size during evolution of the Glomeromycota.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Gollotte</LastName><ForeName>Armelle</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>UMR 1088 INRA/5184 CNRS/Université de Bourgogne Plante-Microbe-Environnement, INRA-CMSE, BP 86510, 21065 Dijon Cedex, France. gollotte@epoisses.inra.fr</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>L'Haridon</LastName><ForeName>Floriane</ForeName><Initials>F</Initials></Author><Author ValidYN="Y"><LastName>Chatagnier</LastName><ForeName>Odile</ForeName><Initials>O</Initials></Author><Author ValidYN="Y"><LastName>Wettstein</LastName><ForeName>Guillaume</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Arnould</LastName><ForeName>Christine</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>van 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uniqKey="Gianinazzi Pearson V" first="Vivienne" last="Gianinazzi-Pearson">Vivienne Gianinazzi-Pearson</name><name sortKey="L Haridon, Floriane" sort="L Haridon, Floriane" uniqKey="L Haridon F" first="Floriane" last="L'Haridon">Floriane L'Haridon</name><name sortKey="Van Tuinen, Diederik" sort="Van Tuinen, Diederik" uniqKey="Van Tuinen D" first="Diederik" last="Van Tuinen">Diederik Van Tuinen</name><name sortKey="Wettstein, Guillaume" sort="Wettstein, Guillaume" uniqKey="Wettstein G" first="Guillaume" last="Wettstein">Guillaume Wettstein</name></noCountry><country name="France"><region name="Bourgogne-Franche-Comté"><name sortKey="Gollotte, Armelle" sort="Gollotte, Armelle" uniqKey="Gollotte A" first="Armelle" last="Gollotte">Armelle Gollotte</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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