Arbuscular mycorrhizal fungal communities and Rhizophagus irregularis populations shift in response to short-term ploughing and fertilisation in a buffer strip.
Identifieur interne : 001274 ( Main/Exploration ); précédent : 001273; suivant : 001275Arbuscular mycorrhizal fungal communities and Rhizophagus irregularis populations shift in response to short-term ploughing and fertilisation in a buffer strip.
Auteurs : M. Peyret-Guzzon [France] ; H. Stockinger [France] ; M-L Bouffaud [France] ; P. Farcy [France] ; D. Wipf [France] ; D. Redecker [France]Source :
- Mycorrhiza [ 1432-1890 ] ; 2016.
Descripteurs français
- KwdFr :
- ADN fongique (génétique), ADN mitochondrial (génétique), ADN ribosomique (génétique), Agriculture (MeSH), Analyse de séquence d'ADN (MeSH), Engrais (MeSH), Glomeromycota (génétique), Glomeromycota (métabolisme), Glomeromycota (physiologie), Grande sous-unité du ribosome (génétique), Microbiologie du sol (MeSH), Mycorhizes (métabolisme), Mycorhizes (physiologie), Prairie (MeSH), RNA polymerase II (génétique), Racines de plante (microbiologie), Ribosomes mitochondriaux (microbiologie), Sol (composition chimique), Symbiose (MeSH), Variation génétique (MeSH).
- MESH :
- composition chimique : Sol.
- génétique : ADN fongique, ADN mitochondrial, ADN ribosomique, Glomeromycota, Grande sous-unité du ribosome, RNA polymerase II.
- microbiologie : Racines de plante, Ribosomes mitochondriaux.
- métabolisme : Glomeromycota, Mycorhizes.
- physiologie : Glomeromycota, Mycorhizes.
- Agriculture, Analyse de séquence d'ADN, Engrais, Microbiologie du sol, Prairie, Symbiose, Variation génétique.
English descriptors
- KwdEn :
- Agriculture (MeSH), DNA, Fungal (genetics), DNA, Mitochondrial (genetics), DNA, Ribosomal (genetics), Fertilizers (MeSH), Genetic Variation (MeSH), Glomeromycota (genetics), Glomeromycota (metabolism), Glomeromycota (physiology), Grassland (MeSH), Mitochondrial Ribosomes (microbiology), Mycorrhizae (metabolism), Mycorrhizae (physiology), Plant Roots (microbiology), RNA Polymerase II (genetics), Ribosome Subunits, Large (genetics), Sequence Analysis, DNA (MeSH), Soil (chemistry), Soil Microbiology (MeSH), Symbiosis (MeSH).
- MESH :
- chemical , chemistry : Soil.
- chemical , genetics : DNA, Fungal, DNA, Mitochondrial, DNA, Ribosomal, RNA Polymerase II.
- genetics : Glomeromycota, Ribosome Subunits, Large.
- metabolism : Glomeromycota, Mycorrhizae.
- microbiology : Mitochondrial Ribosomes, Plant Roots.
- physiology : Glomeromycota, Mycorrhizae.
- Agriculture, Fertilizers, Genetic Variation, Grassland, Sequence Analysis, DNA, Soil Microbiology, Symbiosis.
Abstract
Short-term effects of soil physical disturbance by ploughing and nitrogen and phosphate fertilisation on arbuscular mycorrhizal fungal (AMF) communities and on intraspecific populations of Rhizophagus irregularis in a buffer strip surrounded by arable fields were studied. Pre-grown Plantago lanceolata plantlets were transplanted into fertilised and/or ploughed experimental plots. After 3 months, the glomeromycotan communities in the roots of these trap plants were analysed using 454 pyrosequencing of a fragment of the RNA polymerase II gene (RPB1). Intraspecific populations of R. irregularis were studied by restriction fragment length polymorphism (RFLP) analysis of the mitochondrial large ribosomal subunit (mtLSU) gene. Soil disturbance significantly increased the diversity of species-level molecular taxa (MTs) and altered community structure, whilst fertilisation alone had no significant effect, unless coupled with ploughing. At the population level, the expected shift from genotypes of R. irregularis typically found in grasslands to those usually found in arable sites was only partially observed. In conclusion, in the short-term, physical soil disturbance, as well as nitrogen fertilisation when coupled with physical soil disturbance, affected AMF community and to a smaller extent population composition.
DOI: 10.1007/s00572-015-0644-5
PubMed: 26023005
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Arbuscular mycorrhizal fungal communities and Rhizophagus irregularis populations shift in response to short-term ploughing and fertilisation in a buffer strip.</title>
<author><name sortKey="Peyret Guzzon, M" sort="Peyret Guzzon, M" uniqKey="Peyret Guzzon M" first="M" last="Peyret-Guzzon">M. Peyret-Guzzon</name>
<affiliation wicri:level="3"><nlm:affiliation>INRA, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>INRA, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex</wicri:regionArea>
<placeName><region type="region" nuts="2">Bourgogne-Franche-Comté</region>
<region type="old region" nuts="2">Bourgogne</region>
<settlement type="city">Dijon</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Stockinger, H" sort="Stockinger, H" uniqKey="Stockinger H" first="H" last="Stockinger">H. Stockinger</name>
<affiliation wicri:level="3"><nlm:affiliation>INRA, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>INRA, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex</wicri:regionArea>
<placeName><region type="region" nuts="2">Bourgogne-Franche-Comté</region>
<region type="old region" nuts="2">Bourgogne</region>
<settlement type="city">Dijon</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Bouffaud, M L" sort="Bouffaud, M L" uniqKey="Bouffaud M" first="M-L" last="Bouffaud">M-L Bouffaud</name>
<affiliation wicri:level="3"><nlm:affiliation>INRA, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>INRA, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex</wicri:regionArea>
<placeName><region type="region" nuts="2">Bourgogne-Franche-Comté</region>
<region type="old region" nuts="2">Bourgogne</region>
<settlement type="city">Dijon</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Farcy, P" sort="Farcy, P" uniqKey="Farcy P" first="P" last="Farcy">P. Farcy</name>
<affiliation wicri:level="3"><nlm:affiliation>Domaine Expérimental d'Epoisses, UE 0115 INRA, Dijon, 21110, Bretenières, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Domaine Expérimental d'Epoisses, UE 0115 INRA, Dijon, 21110, Bretenières</wicri:regionArea>
<placeName><region type="region" nuts="2">Bourgogne-Franche-Comté</region>
<region type="old region" nuts="2">Bourgogne</region>
<settlement type="city">Bretenières</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Wipf, D" sort="Wipf, D" uniqKey="Wipf D" first="D" last="Wipf">D. Wipf</name>
<affiliation wicri:level="4"><nlm:affiliation>Université de Bourgogne, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Université de Bourgogne, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex</wicri:regionArea>
<placeName><region type="region" nuts="2">Bourgogne-Franche-Comté</region>
<region type="old region" nuts="2">Bourgogne</region>
<settlement type="city">Dijon</settlement>
</placeName>
<orgName type="university">Université de Bourgogne</orgName>
</affiliation>
</author>
<author><name sortKey="Redecker, D" sort="Redecker, D" uniqKey="Redecker D" first="D" last="Redecker">D. Redecker</name>
<affiliation wicri:level="4"><nlm:affiliation>Université de Bourgogne, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex, France. dirk.redecker@dijon.inra.fr.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Université de Bourgogne, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex</wicri:regionArea>
<placeName><region type="region" nuts="2">Bourgogne-Franche-Comté</region>
<region type="old region" nuts="2">Bourgogne</region>
<settlement type="city">Dijon</settlement>
</placeName>
<orgName type="university">Université de Bourgogne</orgName>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2016">2016</date>
<idno type="RBID">pubmed:26023005</idno>
<idno type="pmid">26023005</idno>
<idno type="doi">10.1007/s00572-015-0644-5</idno>
<idno type="wicri:Area/Main/Corpus">001442</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001442</idno>
<idno type="wicri:Area/Main/Curation">001442</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">001442</idno>
<idno type="wicri:Area/Main/Exploration">001442</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Arbuscular mycorrhizal fungal communities and Rhizophagus irregularis populations shift in response to short-term ploughing and fertilisation in a buffer strip.</title>
<author><name sortKey="Peyret Guzzon, M" sort="Peyret Guzzon, M" uniqKey="Peyret Guzzon M" first="M" last="Peyret-Guzzon">M. Peyret-Guzzon</name>
<affiliation wicri:level="3"><nlm:affiliation>INRA, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>INRA, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex</wicri:regionArea>
<placeName><region type="region" nuts="2">Bourgogne-Franche-Comté</region>
<region type="old region" nuts="2">Bourgogne</region>
<settlement type="city">Dijon</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Stockinger, H" sort="Stockinger, H" uniqKey="Stockinger H" first="H" last="Stockinger">H. Stockinger</name>
<affiliation wicri:level="3"><nlm:affiliation>INRA, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>INRA, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex</wicri:regionArea>
<placeName><region type="region" nuts="2">Bourgogne-Franche-Comté</region>
<region type="old region" nuts="2">Bourgogne</region>
<settlement type="city">Dijon</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Bouffaud, M L" sort="Bouffaud, M L" uniqKey="Bouffaud M" first="M-L" last="Bouffaud">M-L Bouffaud</name>
<affiliation wicri:level="3"><nlm:affiliation>INRA, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>INRA, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex</wicri:regionArea>
<placeName><region type="region" nuts="2">Bourgogne-Franche-Comté</region>
<region type="old region" nuts="2">Bourgogne</region>
<settlement type="city">Dijon</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Farcy, P" sort="Farcy, P" uniqKey="Farcy P" first="P" last="Farcy">P. Farcy</name>
<affiliation wicri:level="3"><nlm:affiliation>Domaine Expérimental d'Epoisses, UE 0115 INRA, Dijon, 21110, Bretenières, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Domaine Expérimental d'Epoisses, UE 0115 INRA, Dijon, 21110, Bretenières</wicri:regionArea>
<placeName><region type="region" nuts="2">Bourgogne-Franche-Comté</region>
<region type="old region" nuts="2">Bourgogne</region>
<settlement type="city">Bretenières</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Wipf, D" sort="Wipf, D" uniqKey="Wipf D" first="D" last="Wipf">D. Wipf</name>
<affiliation wicri:level="4"><nlm:affiliation>Université de Bourgogne, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Université de Bourgogne, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex</wicri:regionArea>
<placeName><region type="region" nuts="2">Bourgogne-Franche-Comté</region>
<region type="old region" nuts="2">Bourgogne</region>
<settlement type="city">Dijon</settlement>
</placeName>
<orgName type="university">Université de Bourgogne</orgName>
</affiliation>
</author>
<author><name sortKey="Redecker, D" sort="Redecker, D" uniqKey="Redecker D" first="D" last="Redecker">D. Redecker</name>
<affiliation wicri:level="4"><nlm:affiliation>Université de Bourgogne, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex, France. dirk.redecker@dijon.inra.fr.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Université de Bourgogne, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex</wicri:regionArea>
<placeName><region type="region" nuts="2">Bourgogne-Franche-Comté</region>
<region type="old region" nuts="2">Bourgogne</region>
<settlement type="city">Dijon</settlement>
</placeName>
<orgName type="university">Université de Bourgogne</orgName>
</affiliation>
</author>
</analytic>
<series><title level="j">Mycorrhiza</title>
<idno type="eISSN">1432-1890</idno>
<imprint><date when="2016" type="published">2016</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Agriculture (MeSH)</term>
<term>DNA, Fungal (genetics)</term>
<term>DNA, Mitochondrial (genetics)</term>
<term>DNA, Ribosomal (genetics)</term>
<term>Fertilizers (MeSH)</term>
<term>Genetic Variation (MeSH)</term>
<term>Glomeromycota (genetics)</term>
<term>Glomeromycota (metabolism)</term>
<term>Glomeromycota (physiology)</term>
<term>Grassland (MeSH)</term>
<term>Mitochondrial Ribosomes (microbiology)</term>
<term>Mycorrhizae (metabolism)</term>
<term>Mycorrhizae (physiology)</term>
<term>Plant Roots (microbiology)</term>
<term>RNA Polymerase II (genetics)</term>
<term>Ribosome Subunits, Large (genetics)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Soil (chemistry)</term>
<term>Soil Microbiology (MeSH)</term>
<term>Symbiosis (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ADN fongique (génétique)</term>
<term>ADN mitochondrial (génétique)</term>
<term>ADN ribosomique (génétique)</term>
<term>Agriculture (MeSH)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Engrais (MeSH)</term>
<term>Glomeromycota (génétique)</term>
<term>Glomeromycota (métabolisme)</term>
<term>Glomeromycota (physiologie)</term>
<term>Grande sous-unité du ribosome (génétique)</term>
<term>Microbiologie du sol (MeSH)</term>
<term>Mycorhizes (métabolisme)</term>
<term>Mycorhizes (physiologie)</term>
<term>Prairie (MeSH)</term>
<term>RNA polymerase II (génétique)</term>
<term>Racines de plante (microbiologie)</term>
<term>Ribosomes mitochondriaux (microbiologie)</term>
<term>Sol (composition chimique)</term>
<term>Symbiose (MeSH)</term>
<term>Variation génétique (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Soil</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Fungal</term>
<term>DNA, Mitochondrial</term>
<term>DNA, Ribosomal</term>
<term>RNA Polymerase II</term>
</keywords>
<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Sol</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Glomeromycota</term>
<term>Ribosome Subunits, Large</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN fongique</term>
<term>ADN mitochondrial</term>
<term>ADN ribosomique</term>
<term>Glomeromycota</term>
<term>Grande sous-unité du ribosome</term>
<term>RNA polymerase II</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Glomeromycota</term>
<term>Mycorrhizae</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Racines de plante</term>
<term>Ribosomes mitochondriaux</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Mitochondrial Ribosomes</term>
<term>Plant Roots</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Glomeromycota</term>
<term>Mycorhizes</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Glomeromycota</term>
<term>Mycorhizes</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Glomeromycota</term>
<term>Mycorrhizae</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Agriculture</term>
<term>Fertilizers</term>
<term>Genetic Variation</term>
<term>Grassland</term>
<term>Sequence Analysis, DNA</term>
<term>Soil Microbiology</term>
<term>Symbiosis</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Agriculture</term>
<term>Analyse de séquence d'ADN</term>
<term>Engrais</term>
<term>Microbiologie du sol</term>
<term>Prairie</term>
<term>Symbiose</term>
<term>Variation génétique</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Short-term effects of soil physical disturbance by ploughing and nitrogen and phosphate fertilisation on arbuscular mycorrhizal fungal (AMF) communities and on intraspecific populations of Rhizophagus irregularis in a buffer strip surrounded by arable fields were studied. Pre-grown Plantago lanceolata plantlets were transplanted into fertilised and/or ploughed experimental plots. After 3 months, the glomeromycotan communities in the roots of these trap plants were analysed using 454 pyrosequencing of a fragment of the RNA polymerase II gene (RPB1). Intraspecific populations of R. irregularis were studied by restriction fragment length polymorphism (RFLP) analysis of the mitochondrial large ribosomal subunit (mtLSU) gene. Soil disturbance significantly increased the diversity of species-level molecular taxa (MTs) and altered community structure, whilst fertilisation alone had no significant effect, unless coupled with ploughing. At the population level, the expected shift from genotypes of R. irregularis typically found in grasslands to those usually found in arable sites was only partially observed. In conclusion, in the short-term, physical soil disturbance, as well as nitrogen fertilisation when coupled with physical soil disturbance, affected AMF community and to a smaller extent population composition. </div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26023005</PMID>
<DateCompleted><Year>2016</Year>
<Month>10</Month>
<Day>20</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-1890</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>26</Volume>
<Issue>1</Issue>
<PubDate><Year>2016</Year>
<Month>Jan</Month>
</PubDate>
</JournalIssue>
<Title>Mycorrhiza</Title>
<ISOAbbreviation>Mycorrhiza</ISOAbbreviation>
</Journal>
<ArticleTitle>Arbuscular mycorrhizal fungal communities and Rhizophagus irregularis populations shift in response to short-term ploughing and fertilisation in a buffer strip.</ArticleTitle>
<Pagination><MedlinePgn>33-46</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1007/s00572-015-0644-5</ELocationID>
<Abstract><AbstractText>Short-term effects of soil physical disturbance by ploughing and nitrogen and phosphate fertilisation on arbuscular mycorrhizal fungal (AMF) communities and on intraspecific populations of Rhizophagus irregularis in a buffer strip surrounded by arable fields were studied. Pre-grown Plantago lanceolata plantlets were transplanted into fertilised and/or ploughed experimental plots. After 3 months, the glomeromycotan communities in the roots of these trap plants were analysed using 454 pyrosequencing of a fragment of the RNA polymerase II gene (RPB1). Intraspecific populations of R. irregularis were studied by restriction fragment length polymorphism (RFLP) analysis of the mitochondrial large ribosomal subunit (mtLSU) gene. Soil disturbance significantly increased the diversity of species-level molecular taxa (MTs) and altered community structure, whilst fertilisation alone had no significant effect, unless coupled with ploughing. At the population level, the expected shift from genotypes of R. irregularis typically found in grasslands to those usually found in arable sites was only partially observed. In conclusion, in the short-term, physical soil disturbance, as well as nitrogen fertilisation when coupled with physical soil disturbance, affected AMF community and to a smaller extent population composition. </AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Peyret-Guzzon</LastName>
<ForeName>M</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>INRA, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Stockinger</LastName>
<ForeName>H</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>INRA, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Bouffaud</LastName>
<ForeName>M-L</ForeName>
<Initials>ML</Initials>
<AffiliationInfo><Affiliation>INRA, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Farcy</LastName>
<ForeName>P</ForeName>
<Initials>P</Initials>
<AffiliationInfo><Affiliation>Domaine Expérimental d'Epoisses, UE 0115 INRA, Dijon, 21110, Bretenières, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wipf</LastName>
<ForeName>D</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>Université de Bourgogne, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Redecker</LastName>
<ForeName>D</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>Université de Bourgogne, UMR 1347 Agroécologie, 17 Rue Sully, BP 86510, 21065, Dijon Cedex, France. dirk.redecker@dijon.inra.fr.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2015</Year>
<Month>05</Month>
<Day>29</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>Germany</Country>
<MedlineTA>Mycorrhiza</MedlineTA>
<NlmUniqueID>100955036</NlmUniqueID>
<ISSNLinking>0940-6360</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004272">DNA, Mitochondrial</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005308">Fertilizers</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012987">Soil</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>EC 2.7.7.-</RegistryNumber>
<NameOfSubstance UI="D012319">RNA Polymerase II</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000383" MajorTopicYN="Y">Agriculture</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004272" MajorTopicYN="N">DNA, Mitochondrial</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004275" MajorTopicYN="N">DNA, Ribosomal</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005308" MajorTopicYN="N">Fertilizers</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D055137" MajorTopicYN="N">Glomeromycota</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
<QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D065948" MajorTopicYN="N">Grassland</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000069396" MajorTopicYN="N">Mitochondrial Ribosomes</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
<QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012319" MajorTopicYN="N">RNA Polymerase II</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D054658" MajorTopicYN="N">Ribosome Subunits, Large</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012987" MajorTopicYN="N">Soil</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012988" MajorTopicYN="N">Soil Microbiology</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013559" MajorTopicYN="N">Symbiosis</DescriptorName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Fertilisation</Keyword>
<Keyword MajorTopicYN="N">Glomeromycota</Keyword>
<Keyword MajorTopicYN="N">Next-generation sequencing</Keyword>
<Keyword MajorTopicYN="N">RPB1</Keyword>
<Keyword MajorTopicYN="N">Tillage</Keyword>
<Keyword MajorTopicYN="N">mtLSU</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year>
<Month>02</Month>
<Day>22</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2015</Year>
<Month>04</Month>
<Day>28</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2015</Year>
<Month>5</Month>
<Day>30</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2015</Year>
<Month>5</Month>
<Day>30</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2016</Year>
<Month>10</Month>
<Day>21</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">26023005</ArticleId>
<ArticleId IdType="doi">10.1007/s00572-015-0644-5</ArticleId>
<ArticleId IdType="pii">10.1007/s00572-015-0644-5</ArticleId>
</ArticleIdList>
<ReferenceList><Reference><Citation>Nucleic Acids Res. 2004 Feb 25;32(4):1363-71</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14985472</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycologia. 2006 Nov-Dec;98(6):885-95</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17486965</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycorrhiza. 2011 Apr;21(3):211-20</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20593293</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycorrhiza. 2013 Oct;23(7):515-31</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23558516</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycorrhiza. 2007 Dec;18(1):1-14</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17879101</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Glob Chang Biol. 2014 Dec;20(12):3646-59</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24764217</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Environ Microbiol. 2007 Aug;9(8):1930-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17635540</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Ecol. 2002 Dec;11(12):2669-78</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12453249</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Cell. 2002 Oct;14(10):2413-29</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12368495</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>FEMS Microbiol Ecol. 2001 Jul;36(2-3):203-209</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11451525</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2011 Aug 1;27(15):2068-75</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21636595</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2012 Apr 17;109(16):6241-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22454494</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2010 Jun;186(4):968-79</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20345633</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2011 Aug 15;27(16):2194-200</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21700674</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Ecol Appl. 2008 Mar;18(2):527-36</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18488613</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Ecol. 2014 Apr;23(8):2118-35</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24611988</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycorrhiza. 2014 Jan;24(1):1-11</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23715868</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Curr Biol. 2010 Jul 13;20(13):1216-21</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20541408</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2014 Oct 02;9(9):e107783</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25275381</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Ecol. 2010 Dec;19(24):5555-65</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21050295</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycorrhiza. 2010 Nov;20(8):519-30</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20697748</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2012 Apr;194(2):523-35</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22292929</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Ecol Lett. 2006 Feb;9(2):103-10</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16958874</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Ecol. 2003 Nov;12(11):3085-95</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14629388</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Ecol. 2006 Jul;15(8):2277-89</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16780440</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2006;172(1):159-68</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16945098</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2010 Jul;187(2):461-74</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20456046</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2007 Aug;73(16):5261-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17586664</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 1995 Dec 25;23(24):4992-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">8559656</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Ecology. 2009 Dec;90(12):3566-74</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20120823</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2010 Jan 15;26(2):266-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19914921</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Methods. 2010 May;7(5):335-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20383131</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Environ Sci Technol. 2012 Jun 5;46(11):5764-71</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22582875</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2008;178(2):253-66</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18248587</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Ecol Lett. 2008 Mar;11(3):296-310</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18047587</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>ISME J. 2010 Mar;4(3):337-45</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19924158</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2009;183(4):1176-87</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19496945</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Oecologia. 1993 Dec;96(4):451-456</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28312450</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Ecol. 2010 Apr;19(7):1497-511</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20456234</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Evol Appl. 2010 Sep;3(5-6):547-60</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25567946</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2008;180(2):452-65</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18643898</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2005 Dec;71(12):8228-35</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16332807</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>ISME J. 2013 Jul;7(7):1424-33</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23486251</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2003 May;69(5):2816-24</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12732553</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>FEMS Microbiol Ecol. 2008 Aug;65(2):323-38</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18547325</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2010 Jun;76(12):3863-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20418443</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2011 Mar 1;27(5):611-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21233169</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2013 Nov;79(21):6719-29</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23995929</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycorrhiza. 2002 Oct;12(5):225-34</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12375133</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2010 Oct 1;26(19):2460-1</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20709691</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Ecology. 2006 Jul;87(7):1627-36</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16922314</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2005 Jan;165(1):273-83</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15720639</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Ecol Resour. 2012 Mar;12(2):219-32</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22059700</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2014 Jul;203(1):233-44</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24641509</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycorrhiza. 2015 May;25(4):267-76</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25307533</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2004 Feb 24;101(8):2369-74</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14983016</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2008;177(3):779-89</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18042204</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2011;6(9):e22594</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21949676</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Environ Microbiol. 2010 Aug;12(8):2165-79</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21966911</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nature. 1998 Jul 30;394(6692):431</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9697763</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2007 Sep;73(17):5426-34</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17630317</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nature. 2006 Oct 19;443(7113):818-22</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17051209</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2008;179(3):867-76</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18537886</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>France</li>
</country>
<region><li>Bourgogne</li>
<li>Bourgogne-Franche-Comté</li>
</region>
<settlement><li>Bretenières</li>
<li>Dijon</li>
</settlement>
<orgName><li>Université de Bourgogne</li>
</orgName>
</list>
<tree><country name="France"><region name="Bourgogne-Franche-Comté"><name sortKey="Peyret Guzzon, M" sort="Peyret Guzzon, M" uniqKey="Peyret Guzzon M" first="M" last="Peyret-Guzzon">M. Peyret-Guzzon</name>
</region>
<name sortKey="Bouffaud, M L" sort="Bouffaud, M L" uniqKey="Bouffaud M" first="M-L" last="Bouffaud">M-L Bouffaud</name>
<name sortKey="Farcy, P" sort="Farcy, P" uniqKey="Farcy P" first="P" last="Farcy">P. Farcy</name>
<name sortKey="Redecker, D" sort="Redecker, D" uniqKey="Redecker D" first="D" last="Redecker">D. Redecker</name>
<name sortKey="Stockinger, H" sort="Stockinger, H" uniqKey="Stockinger H" first="H" last="Stockinger">H. Stockinger</name>
<name sortKey="Wipf, D" sort="Wipf, D" uniqKey="Wipf D" first="D" last="Wipf">D. Wipf</name>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/MycorrhizaeV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001274 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001274 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Bois |area= MycorrhizaeV1 |flux= Main |étape= Exploration |type= RBID |clé= pubmed:26023005 |texte= Arbuscular mycorrhizal fungal communities and Rhizophagus irregularis populations shift in response to short-term ploughing and fertilisation in a buffer strip. }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:26023005" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \ | NlmPubMed2Wicri -a MycorrhizaeV1
![]() | This area was generated with Dilib version V0.6.37. | ![]() |