Ectomycorrhizal community composition of organic and mineral soil horizons in silver fir (Abies alba Mill.) stands.
Identifieur interne : 000186 ( Main/Exploration ); précédent : 000185; suivant : 000187Ectomycorrhizal community composition of organic and mineral soil horizons in silver fir (Abies alba Mill.) stands.
Auteurs : Tanja Mrak [Slovénie] ; Emira Huki [Bosnie-Herzégovine] ; Ines Štraus [Slovénie] ; Tina Unuk Nahberger [Slovénie] ; Hojka Kraigher [Slovénie]Source :
- Mycorrhiza [ 1432-1890 ] ; 2020.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical : Minerals, Soil.
- Abies, Biodiversity, Forests, Mycorrhizae, Soil Microbiology, Trees.
Abstract
Vertical ectomycorrhizal (ECM) community composition was assessed on silver fir (Abies alba Mill.) in beech-silver fir forests in Bosnia and Herzegovina. Organic and upper mineral horizons were described by pedological analyses. Silver fir root tips were divided into vital ECM, old and non-mycorrhizal for each horizon separately. Morpho-anatomical classification of vital ECM root tips with an assessment of abundance was followed by ITS-based molecular characterization and classification into exploration types. The percentage of vital ECM root tips was not affected by the soil horizon. Altogether, 40 ECM taxa were recorded. Several taxa have not previously been reported for silver fir: Hebeloma laterinum, Inocybe fuscidula, I. glabripes, Lactarius acris, L. albocarneus, L. blennius, L. fluens, Ramaria bataillei, Russula badia, R. lutea, R. mairei, Sistotrema sp., Tarzetta catinus, Tomentella atroarenicolor, T. badia, T. cinerascens, T. bryophylla, and T. ramosissima, indicating high potential for diversity of ECM fungi in silver fir stands. No significant differences in community composition and species richness and diversity were detected between mineral and organic horizons. Community composition was affected by CaCO3, organic carbon concentration, organic carbon stock, total nitrogen stock, C/N ratio and soil bulk density. No significant effects of soil parameters were detected for exploration types. The contact exploration type was dominant in both soil horizons. Significantly different relative abundances of dominant taxa Tomentella stuposa, Cenococcum geophilum and Piloderma sp. 1 were detected in the two horizons. Twelve taxa were limited to the organic horizon and eight to the mineral horizon.
DOI: 10.1007/s00572-020-00970-y
PubMed: 32691152
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Ectomycorrhizal community composition of organic and mineral soil horizons in silver fir (Abies alba Mill.) stands.</title><author><name sortKey="Mrak, Tanja" sort="Mrak, Tanja" uniqKey="Mrak T" first="Tanja" last="Mrak">Tanja Mrak</name><affiliation wicri:level="1"><nlm:affiliation>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana, Slovenia. tanja.mrak@gozdis.si.</nlm:affiliation><country xml:lang="fr">Slovénie</country><wicri:regionArea>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana</wicri:regionArea><wicri:noRegion>Ljubljana</wicri:noRegion></affiliation></author><author><name sortKey="Huki, Emira" sort="Huki, Emira" uniqKey="Huki E" first="Emira" last="Huki">Emira Huki</name><affiliation wicri:level="1"><nlm:affiliation>Faculty of Forestry, University of Sarajevo, Zagrebačka 20, 71000, Sarajevo, Bosnia and Herzegovina.</nlm:affiliation><country xml:lang="fr">Bosnie-Herzégovine</country><wicri:regionArea>Faculty of Forestry, University of Sarajevo, Zagrebačka 20, 71000, Sarajevo</wicri:regionArea><wicri:noRegion>Sarajevo</wicri:noRegion></affiliation></author><author><name sortKey="Straus, Ines" sort="Straus, Ines" uniqKey="Straus I" first="Ines" last="Štraus">Ines Štraus</name><affiliation wicri:level="1"><nlm:affiliation>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana, Slovenia.</nlm:affiliation><country xml:lang="fr">Slovénie</country><wicri:regionArea>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana</wicri:regionArea><wicri:noRegion>Ljubljana</wicri:noRegion></affiliation></author><author><name sortKey="Unuk Nahberger, Tina" sort="Unuk Nahberger, Tina" uniqKey="Unuk Nahberger T" first="Tina" last="Unuk Nahberger">Tina Unuk Nahberger</name><affiliation wicri:level="1"><nlm:affiliation>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana, Slovenia.</nlm:affiliation><country xml:lang="fr">Slovénie</country><wicri:regionArea>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana</wicri:regionArea><wicri:noRegion>Ljubljana</wicri:noRegion></affiliation></author><author><name sortKey="Kraigher, Hojka" sort="Kraigher, Hojka" uniqKey="Kraigher H" first="Hojka" last="Kraigher">Hojka Kraigher</name><affiliation wicri:level="1"><nlm:affiliation>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana, Slovenia.</nlm:affiliation><country xml:lang="fr">Slovénie</country><wicri:regionArea>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana</wicri:regionArea><wicri:noRegion>Ljubljana</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2020">2020</date><idno type="RBID">pubmed:32691152</idno><idno type="pmid">32691152</idno><idno type="doi">10.1007/s00572-020-00970-y</idno><idno type="wicri:Area/Main/Corpus">000045</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000045</idno><idno type="wicri:Area/Main/Curation">000045</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000045</idno><idno type="wicri:Area/Main/Exploration">000045</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Ectomycorrhizal community composition of organic and mineral soil horizons in silver fir (Abies alba Mill.) stands.</title><author><name sortKey="Mrak, Tanja" sort="Mrak, Tanja" uniqKey="Mrak T" first="Tanja" last="Mrak">Tanja Mrak</name><affiliation wicri:level="1"><nlm:affiliation>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana, Slovenia. tanja.mrak@gozdis.si.</nlm:affiliation><country xml:lang="fr">Slovénie</country><wicri:regionArea>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana</wicri:regionArea><wicri:noRegion>Ljubljana</wicri:noRegion></affiliation></author><author><name sortKey="Huki, Emira" sort="Huki, Emira" uniqKey="Huki E" first="Emira" last="Huki">Emira Huki</name><affiliation wicri:level="1"><nlm:affiliation>Faculty of Forestry, University of Sarajevo, Zagrebačka 20, 71000, Sarajevo, Bosnia and Herzegovina.</nlm:affiliation><country xml:lang="fr">Bosnie-Herzégovine</country><wicri:regionArea>Faculty of Forestry, University of Sarajevo, Zagrebačka 20, 71000, Sarajevo</wicri:regionArea><wicri:noRegion>Sarajevo</wicri:noRegion></affiliation></author><author><name sortKey="Straus, Ines" sort="Straus, Ines" uniqKey="Straus I" first="Ines" last="Štraus">Ines Štraus</name><affiliation wicri:level="1"><nlm:affiliation>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana, Slovenia.</nlm:affiliation><country xml:lang="fr">Slovénie</country><wicri:regionArea>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana</wicri:regionArea><wicri:noRegion>Ljubljana</wicri:noRegion></affiliation></author><author><name sortKey="Unuk Nahberger, Tina" sort="Unuk Nahberger, Tina" uniqKey="Unuk Nahberger T" first="Tina" last="Unuk Nahberger">Tina Unuk Nahberger</name><affiliation wicri:level="1"><nlm:affiliation>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana, Slovenia.</nlm:affiliation><country xml:lang="fr">Slovénie</country><wicri:regionArea>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana</wicri:regionArea><wicri:noRegion>Ljubljana</wicri:noRegion></affiliation></author><author><name sortKey="Kraigher, Hojka" sort="Kraigher, Hojka" uniqKey="Kraigher H" first="Hojka" last="Kraigher">Hojka Kraigher</name><affiliation wicri:level="1"><nlm:affiliation>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana, Slovenia.</nlm:affiliation><country xml:lang="fr">Slovénie</country><wicri:regionArea>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana</wicri:regionArea><wicri:noRegion>Ljubljana</wicri:noRegion></affiliation></author></analytic><series><title level="j">Mycorrhiza</title><idno type="eISSN">1432-1890</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Abies (MeSH)</term><term>Biodiversity (MeSH)</term><term>Forests (MeSH)</term><term>Minerals (MeSH)</term><term>Mycorrhizae (MeSH)</term><term>Soil (MeSH)</term><term>Soil Microbiology (MeSH)</term><term>Trees (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Abies (MeSH)</term><term>Arbres (MeSH)</term><term>Biodiversité (MeSH)</term><term>Forêts (MeSH)</term><term>Microbiologie du sol (MeSH)</term><term>Minéraux (MeSH)</term><term>Mycorhizes (MeSH)</term><term>Sol (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Minerals</term><term>Soil</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Abies</term><term>Biodiversity</term><term>Forests</term><term>Mycorrhizae</term><term>Soil Microbiology</term><term>Trees</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Abies</term><term>Arbres</term><term>Biodiversité</term><term>Forêts</term><term>Microbiologie du sol</term><term>Minéraux</term><term>Mycorhizes</term><term>Sol</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Vertical ectomycorrhizal (ECM) community composition was assessed on silver fir (Abies alba Mill.) in beech-silver fir forests in Bosnia and Herzegovina. Organic and upper mineral horizons were described by pedological analyses. Silver fir root tips were divided into vital ECM, old and non-mycorrhizal for each horizon separately. Morpho-anatomical classification of vital ECM root tips with an assessment of abundance was followed by ITS-based molecular characterization and classification into exploration types. The percentage of vital ECM root tips was not affected by the soil horizon. Altogether, 40 ECM taxa were recorded. Several taxa have not previously been reported for silver fir: Hebeloma laterinum, Inocybe fuscidula, I. glabripes, Lactarius acris, L. albocarneus, L. blennius, L. fluens, Ramaria bataillei, Russula badia, R. lutea, R. mairei, Sistotrema sp., Tarzetta catinus, Tomentella atroarenicolor, T. badia, T. cinerascens, T. bryophylla, and T. ramosissima, indicating high potential for diversity of ECM fungi in silver fir stands. No significant differences in community composition and species richness and diversity were detected between mineral and organic horizons. Community composition was affected by CaCO<sub>3</sub>, organic carbon concentration, organic carbon stock, total nitrogen stock, C/N ratio and soil bulk density. No significant effects of soil parameters were detected for exploration types. The contact exploration type was dominant in both soil horizons. Significantly different relative abundances of dominant taxa Tomentella stuposa, Cenococcum geophilum and Piloderma sp. 1 were detected in the two horizons. Twelve taxa were limited to the organic horizon and eight to the mineral horizon.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Automated" Owner="NLM"><PMID Version="1">32691152</PMID><DateCompleted><Year>2020</Year><Month>08</Month><Day>10</Day></DateCompleted><DateRevised><Year>2020</Year><Month>08</Month><Day>10</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-1890</ISSN><JournalIssue CitedMedium="Internet"><Volume>30</Volume><Issue>5</Issue><PubDate><Year>2020</Year><Month>Sep</Month></PubDate></JournalIssue><Title>Mycorrhiza</Title><ISOAbbreviation>Mycorrhiza</ISOAbbreviation></Journal><ArticleTitle>Ectomycorrhizal community composition of organic and mineral soil horizons in silver fir (Abies alba Mill.) stands.</ArticleTitle><Pagination><MedlinePgn>541-553</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00572-020-00970-y</ELocationID><Abstract><AbstractText>Vertical ectomycorrhizal (ECM) community composition was assessed on silver fir (Abies alba Mill.) in beech-silver fir forests in Bosnia and Herzegovina. Organic and upper mineral horizons were described by pedological analyses. Silver fir root tips were divided into vital ECM, old and non-mycorrhizal for each horizon separately. Morpho-anatomical classification of vital ECM root tips with an assessment of abundance was followed by ITS-based molecular characterization and classification into exploration types. The percentage of vital ECM root tips was not affected by the soil horizon. Altogether, 40 ECM taxa were recorded. Several taxa have not previously been reported for silver fir: Hebeloma laterinum, Inocybe fuscidula, I. glabripes, Lactarius acris, L. albocarneus, L. blennius, L. fluens, Ramaria bataillei, Russula badia, R. lutea, R. mairei, Sistotrema sp., Tarzetta catinus, Tomentella atroarenicolor, T. badia, T. cinerascens, T. bryophylla, and T. ramosissima, indicating high potential for diversity of ECM fungi in silver fir stands. No significant differences in community composition and species richness and diversity were detected between mineral and organic horizons. Community composition was affected by CaCO<sub>3</sub>, organic carbon concentration, organic carbon stock, total nitrogen stock, C/N ratio and soil bulk density. No significant effects of soil parameters were detected for exploration types. The contact exploration type was dominant in both soil horizons. Significantly different relative abundances of dominant taxa Tomentella stuposa, Cenococcum geophilum and Piloderma sp. 1 were detected in the two horizons. Twelve taxa were limited to the organic horizon and eight to the mineral horizon.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Mrak</LastName><ForeName>Tanja</ForeName><Initials>T</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-3228-367X</Identifier><AffiliationInfo><Affiliation>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana, Slovenia. tanja.mrak@gozdis.si.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hukić</LastName><ForeName>Emira</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Faculty of Forestry, University of Sarajevo, Zagrebačka 20, 71000, Sarajevo, Bosnia and Herzegovina.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Štraus</LastName><ForeName>Ines</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana, Slovenia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Unuk Nahberger</LastName><ForeName>Tina</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana, Slovenia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kraigher</LastName><ForeName>Hojka</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Slovenian Forestry Institute, Večna pot 2, 1000, Ljubljana, Slovenia.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>P4-0407</GrantID><Agency>Javna Agencija za Raziskovalno Dejavnost RS</Agency><Country></Country></Grant><Grant><GrantID>Young Researcher Programme</GrantID><Agency>Javna Agencija za Raziskovalno Dejavnost RS</Agency><Country></Country></Grant><Grant><GrantID>COST-STSM-FP1305-35140</GrantID><Agency>European Cooperation in Science and Technology</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>07</Month><Day>21</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Mycorrhiza</MedlineTA><NlmUniqueID>100955036</NlmUniqueID><ISSNLinking>0940-6360</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D008903">Minerals</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012987">Soil</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D028202" MajorTopicYN="Y">Abies</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D044822" MajorTopicYN="N">Biodiversity</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D065928" MajorTopicYN="N">Forests</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008903" MajorTopicYN="N">Minerals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="Y">Mycorrhizae</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012987" MajorTopicYN="N">Soil</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="N">Soil Microbiology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014197" MajorTopicYN="N">Trees</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Balkan Peninsula</Keyword><Keyword MajorTopicYN="N">Beech-silver fir forest</Keyword><Keyword MajorTopicYN="N">Biodiversity</Keyword><Keyword MajorTopicYN="N">ECM depth profile</Keyword><Keyword MajorTopicYN="N">Ectomycorrhizal exploration types</Keyword><Keyword MajorTopicYN="N">Ectomycorrhizal fungi (ECM)</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>12</Month><Day>17</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>06</Month><Day>02</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>7</Month><Day>22</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>8</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>7</Month><Day>22</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32691152</ArticleId><ArticleId IdType="doi">10.1007/s00572-020-00970-y</ArticleId><ArticleId IdType="pii">10.1007/s00572-020-00970-y</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Bosnie-Herzégovine</li><li>Slovénie</li></country></list><tree><country name="Slovénie"><noRegion><name sortKey="Mrak, Tanja" sort="Mrak, Tanja" uniqKey="Mrak T" first="Tanja" last="Mrak">Tanja Mrak</name></noRegion><name sortKey="Kraigher, Hojka" sort="Kraigher, Hojka" uniqKey="Kraigher H" first="Hojka" last="Kraigher">Hojka Kraigher</name><name sortKey="Straus, Ines" sort="Straus, Ines" uniqKey="Straus I" first="Ines" last="Štraus">Ines Štraus</name><name sortKey="Unuk Nahberger, Tina" sort="Unuk Nahberger, Tina" uniqKey="Unuk Nahberger T" first="Tina" last="Unuk Nahberger">Tina Unuk Nahberger</name></country><country name="Bosnie-Herzégovine"><noRegion><name sortKey="Huki, Emira" sort="Huki, Emira" uniqKey="Huki E" first="Emira" last="Huki">Emira Huki</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/MycorrhizaeV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000186 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000186 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= MycorrhizaeV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:32691152
|texte= Ectomycorrhizal community composition of organic and mineral soil horizons in silver fir (Abies alba Mill.) stands.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:32691152" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a MycorrhizaeV1
| This area was generated with Dilib version V0.6.37. |  |