Habitat-driven variation in mycorrhizal communities in the terrestrial orchid genus Dactylorhiza.
Identifieur interne : 000E58 ( Main/Curation ); précédent : 000E57; suivant : 000E59Habitat-driven variation in mycorrhizal communities in the terrestrial orchid genus Dactylorhiza.
Auteurs : Hans Jacquemyn [Belgique] ; Michael Waud [Belgique] ; Vincent S F T. Merckx [Pays-Bas] ; Rein Brys [Belgique] ; Daniel Tyteca [Belgique] ; Mikael Hedrén [Suède] ; Bart Lievens [Belgique]Source :
- Scientific reports [ 2045-2322 ] ; 2016.
Descripteurs français
- KwdFr :
- ADN fongique (génétique), Analyse de séquence d'ADN (MeSH), Basidiomycota (génétique), Europe (MeSH), Mycorhizes (génétique), Orchidaceae (microbiologie), Phylogenèse (MeSH), Spécificité d'espèce (MeSH), Symbiose (MeSH), Techniques de typage mycologique (MeSH), Typage moléculaire (MeSH), Écosystème (MeSH).
- MESH :
- génétique : ADN fongique, Basidiomycota, Mycorhizes.
- microbiologie : Orchidaceae.
- Analyse de séquence d'ADN, Europe, Phylogenèse, Spécificité d'espèce, Symbiose, Techniques de typage mycologique, Typage moléculaire, Écosystème.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA, Fungal.
- genetics : Basidiomycota, Mycorrhizae.
- microbiology : Orchidaceae.
- Ecosystem, Europe, Molecular Typing, Mycological Typing Techniques, Phylogeny, Sequence Analysis, DNA, Species Specificity, Symbiosis.
Abstract
Orchid species are critically dependent on mycorrhizal fungi for completion of their life cycle, particularly during the early stages of their development when nutritional resources are scarce. As such, orchid mycorrhizal fungi play an important role in the population dynamics, abundance, and spatial distribution of orchid species. However, less is known about the ecology and distribution of orchid mycorrhizal fungi. In this study, we used 454 amplicon pyrosequencing to investigate ecological and geographic variation in mycorrhizal associations in fourteen species of the orchid genus Dactylorhiza. More specifically, we tested the hypothesis that variation in orchid mycorrhizal communities resulted primarily from differences in habitat conditions where the species were growing. The results showed that all investigated Dactylorhiza species associated with a large number of fungal OTUs, the majority belonging to the Tulasnellaceae, Ceratobasidiaceae and Sebacinales. Mycorrhizal specificity was low, but significant variation in mycorrhizal community composition was observed between species inhabiting different ecological habitats. Although several fungi had a broad geographic distribution, Species Indicator Analysis revealed some fungi that were characteristic for specific habitats. Overall, these results indicate that orchid mycorrhizal fungi may have a broad geographic distribution, but that their occurrence is bounded by specific habitat conditions.
DOI: 10.1038/srep37182
PubMed: 27883008
PubMed Central: PMC5121631
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(BDIV), Université Catholique de Louvain, 1348 Louvain-la-Neuve, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>Biodiversity Research Centre (BDIV), Université Catholique de Louvain, 1348 Louvain-la-Neuve</wicri:regionArea></affiliation></author><author><name sortKey="Hedren, Mikael" sort="Hedren, Mikael" uniqKey="Hedren M" first="Mikael" last="Hedrén">Mikael Hedrén</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biology, Biodiversity, Lund University, Sölvegatan 37, S-22362 Lund, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Biology, Biodiversity, Lund University, Sölvegatan 37, S-22362 Lund</wicri:regionArea></affiliation></author><author><name sortKey="Lievens, Bart" sort="Lievens, Bart" uniqKey="Lievens B" first="Bart" last="Lievens">Bart Lievens</name><affiliation wicri:level="1"><nlm:affiliation>KU Leuven, Campus De Nayer, Department of Microbial and Molecular Systems (M2S), Laboratory for Process Microbial Ecology and Bioinspirational Management (PME&BIM), B-2860 Sint-Katelijne-Waver, Belgium.</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>KU Leuven, Campus De Nayer, Department of Microbial and Molecular Systems (M2S), Laboratory for Process Microbial Ecology and Bioinspirational Management (PME&BIM), B-2860 Sint-Katelijne-Waver</wicri:regionArea></affiliation></author></analytic><series><title level="j">Scientific reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Basidiomycota (genetics)</term><term>DNA, Fungal (genetics)</term><term>Ecosystem (MeSH)</term><term>Europe (MeSH)</term><term>Molecular Typing (MeSH)</term><term>Mycological Typing Techniques (MeSH)</term><term>Mycorrhizae (genetics)</term><term>Orchidaceae (microbiology)</term><term>Phylogeny (MeSH)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Species Specificity (MeSH)</term><term>Symbiosis (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN fongique (génétique)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Basidiomycota (génétique)</term><term>Europe (MeSH)</term><term>Mycorhizes (génétique)</term><term>Orchidaceae (microbiologie)</term><term>Phylogenèse (MeSH)</term><term>Spécificité d'espèce (MeSH)</term><term>Symbiose (MeSH)</term><term>Techniques de typage mycologique (MeSH)</term><term>Typage moléculaire (MeSH)</term><term>Écosystème (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Fungal</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Basidiomycota</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN fongique</term><term>Basidiomycota</term><term>Mycorhizes</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Orchidaceae</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Orchidaceae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Ecosystem</term><term>Europe</term><term>Molecular Typing</term><term>Mycological Typing Techniques</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term><term>Species Specificity</term><term>Symbiosis</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Europe</term><term>Phylogenèse</term><term>Spécificité d'espèce</term><term>Symbiose</term><term>Techniques de typage mycologique</term><term>Typage moléculaire</term><term>Écosystème</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Orchid species are critically dependent on mycorrhizal fungi for completion of their life cycle, particularly during the early stages of their development when nutritional resources are scarce. As such, orchid mycorrhizal fungi play an important role in the population dynamics, abundance, and spatial distribution of orchid species. However, less is known about the ecology and distribution of orchid mycorrhizal fungi. In this study, we used 454 amplicon pyrosequencing to investigate ecological and geographic variation in mycorrhizal associations in fourteen species of the orchid genus Dactylorhiza. More specifically, we tested the hypothesis that variation in orchid mycorrhizal communities resulted primarily from differences in habitat conditions where the species were growing. The results showed that all investigated Dactylorhiza species associated with a large number of fungal OTUs, the majority belonging to the Tulasnellaceae, Ceratobasidiaceae and Sebacinales. Mycorrhizal specificity was low, but significant variation in mycorrhizal community composition was observed between species inhabiting different ecological habitats. Although several fungi had a broad geographic distribution, Species Indicator Analysis revealed some fungi that were characteristic for specific habitats. Overall, these results indicate that orchid mycorrhizal fungi may have a broad geographic distribution, but that their occurrence is bounded by specific habitat conditions.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">27883008</PMID><DateCompleted><Year>2018</Year><Month>05</Month><Day>15</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2045-2322</ISSN><JournalIssue CitedMedium="Internet"><Volume>6</Volume><PubDate><Year>2016</Year><Month>11</Month><Day>24</Day></PubDate></JournalIssue><Title>Scientific reports</Title><ISOAbbreviation>Sci Rep</ISOAbbreviation></Journal><ArticleTitle>Habitat-driven variation in mycorrhizal communities in the terrestrial orchid genus Dactylorhiza.</ArticleTitle><Pagination><MedlinePgn>37182</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/srep37182</ELocationID><Abstract><AbstractText>Orchid species are critically dependent on mycorrhizal fungi for completion of their life cycle, particularly during the early stages of their development when nutritional resources are scarce. As such, orchid mycorrhizal fungi play an important role in the population dynamics, abundance, and spatial distribution of orchid species. However, less is known about the ecology and distribution of orchid mycorrhizal fungi. In this study, we used 454 amplicon pyrosequencing to investigate ecological and geographic variation in mycorrhizal associations in fourteen species of the orchid genus Dactylorhiza. More specifically, we tested the hypothesis that variation in orchid mycorrhizal communities resulted primarily from differences in habitat conditions where the species were growing. The results showed that all investigated Dactylorhiza species associated with a large number of fungal OTUs, the majority belonging to the Tulasnellaceae, Ceratobasidiaceae and Sebacinales. Mycorrhizal specificity was low, but significant variation in mycorrhizal community composition was observed between species inhabiting different ecological habitats. Although several fungi had a broad geographic distribution, Species Indicator Analysis revealed some fungi that were characteristic for specific habitats. Overall, these results indicate that orchid mycorrhizal fungi may have a broad geographic distribution, but that their occurrence is bounded by specific habitat conditions.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Jacquemyn</LastName><ForeName>Hans</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>KU Leuven, Department of Biology, Plant Conservation and Population Biology, B-3001 Leuven, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Waud</LastName><ForeName>Michael</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>KU Leuven, Department of Biology, Plant Conservation and Population Biology, B-3001 Leuven, Belgium.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>KU Leuven, Campus De Nayer, Department of Microbial and Molecular Systems (M2S), Laboratory for Process Microbial Ecology and Bioinspirational Management (PME&BIM), B-2860 Sint-Katelijne-Waver, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Merckx</LastName><ForeName>Vincent S F T</ForeName><Initials>VS</Initials><AffiliationInfo><Affiliation>Naturalis Biodiversity Center, Leiden University, Leiden, the Netherlands.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Brys</LastName><ForeName>Rein</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>KU Leuven, Department of Biology, Plant Conservation and Population Biology, B-3001 Leuven, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tyteca</LastName><ForeName>Daniel</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Biodiversity Research Centre (BDIV), Université Catholique de Louvain, 1348 Louvain-la-Neuve, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hedrén</LastName><ForeName>Mikael</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Biology, Biodiversity, Lund University, Sölvegatan 37, S-22362 Lund, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lievens</LastName><ForeName>Bart</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>KU Leuven, Campus De Nayer, Department of Microbial and Molecular Systems (M2S), Laboratory for Process Microbial Ecology and Bioinspirational Management (PME&BIM), B-2860 Sint-Katelijne-Waver, Belgium.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>260601</GrantID><Agency>European Research Council</Agency><Country>International</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>11</Month><Day>24</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Sci Rep</MedlineTA><NlmUniqueID>101563288</NlmUniqueID><ISSNLinking>2045-2322</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017753" MajorTopicYN="N">Ecosystem</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005060" MajorTopicYN="N">Europe</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D058889" MajorTopicYN="N">Molecular Typing</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016533" MajorTopicYN="N">Mycological Typing Techniques</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D029595" MajorTopicYN="N">Orchidaceae</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013559" MajorTopicYN="N">Symbiosis</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate 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