Clearcutting alters decomposition processes and initiates complex restructuring of fungal communities in soil and tree roots.
Identifieur interne : 000A16 ( Main/Curation ); précédent : 000A15; suivant : 000A17Clearcutting alters decomposition processes and initiates complex restructuring of fungal communities in soil and tree roots.
Auteurs : Petr Kohout [République tchèque] ; Markéta Charvátová [République tchèque] ; Martina Štursová [République tchèque] ; Tereza Mašínová [République tchèque] ; Michal Tomšovsk [République tchèque] ; Petr Baldrian [République tchèque]Source :
- The ISME journal [ 1751-7370 ] ; 2018.
Descripteurs français
- KwdFr :
- Arbres (microbiologie), Biomasse (MeSH), Champignons (classification), Champignons (croissance et développement), Champignons (génétique), Champignons (isolement et purification), Microbiologie du sol (MeSH), Mycobiome (MeSH), Mycorhizes (classification), Mycorhizes (croissance et développement), Mycorhizes (génétique), Mycorhizes (isolement et purification), Pinus (microbiologie), Racines de plante (microbiologie), Rhizosphère (MeSH), Sol (composition chimique), Écosystème (MeSH).
- MESH :
- composition chimique : Champignons, Mycorhizes, Sol.
- croissance et développement : Champignons, Mycorhizes.
- génétique : Champignons, Mycorhizes.
- isolement et purification : Champignons, Mycorhizes.
- microbiologie : Arbres, Pinus, Racines de plante.
- Biomasse, Microbiologie du sol, Mycobiome, Rhizosphère, Écosystème.
English descriptors
- KwdEn :
- Biomass (MeSH), Ecosystem (MeSH), Fungi (classification), Fungi (genetics), Fungi (growth & development), Fungi (isolation & purification), Mycobiome (MeSH), Mycorrhizae (classification), Mycorrhizae (genetics), Mycorrhizae (growth & development), Mycorrhizae (isolation & purification), Pinus (microbiology), Plant Roots (microbiology), Rhizosphere (MeSH), Soil (chemistry), Soil Microbiology (MeSH), Trees (microbiology).
- MESH :
- chemical , chemistry : Soil.
- classification : Fungi, Mycorrhizae.
- genetics : Fungi, Mycorrhizae.
- growth & development : Fungi, Mycorrhizae.
- isolation & purification : Fungi, Mycorrhizae.
- microbiology : Pinus, Plant Roots, Trees.
- Biomass, Ecosystem, Mycobiome, Rhizosphere, Soil Microbiology.
Abstract
Forest management practices often severely affect forest ecosystem functioning. Tree removal by clearcutting is one such practice, producing severe impacts due to the total reduction of primary productivity. Here, we assessed changes to fungal community structure and decomposition activity in the soil, roots and rhizosphere of a Picea abies stand for a 2-year period following clearcutting compared to data from before tree harvest. We found that the termination of photosynthate flow through tree roots into soil is associated with profound changes in soil, both in decomposition processes and fungal community composition. The rhizosphere, representing an active compartment of high enzyme activity and high fungal biomass in the living stand, ceases to exist and starts to resemble bulk soil. Decomposing roots appear to separate from bulk soil and develop into hotspots of decomposition and important fungal biomass pools. We found no support for the involvement of ectomycorrhizal fungi in the decomposition of roots, but we found some evidence that root endophytic fungi may have an important role in the early stages of this process. In soil, activity of extracellular enzymes also decreased in the long term following the end of rhizodeposition by tree roots.
DOI: 10.1038/s41396-017-0027-3
PubMed: 29335638
PubMed Central: PMC5864242
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tree roots.</title><author><name sortKey="Kohout, Petr" sort="Kohout, Petr" uniqKey="Kohout P" first="Petr" last="Kohout">Petr Kohout</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Environmental Microbiology, Institute of Microbiology of the CAS, Vídeňská 1083, 142 20, Praha 4, Czech Republic.</nlm:affiliation><country xml:lang="fr">République tchèque</country><wicri:regionArea>Laboratory of Environmental Microbiology, Institute of Microbiology of the CAS, Vídeňská 1083, 142 20, Praha 4</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Mycorrhizal Symbiosis, Institute of Botany of the CAS, Zámek 1, 252 43, Průhonice, Czech Republic.</nlm:affiliation><country xml:lang="fr">République tchèque</country><wicri:regionArea>Department of Mycorrhizal Symbiosis, Institute of Botany of the CAS, Zámek 1, 252 43, Průhonice</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Experimental Plant 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(microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Arbres (microbiologie)</term><term>Biomasse (MeSH)</term><term>Champignons (classification)</term><term>Champignons (croissance et développement)</term><term>Champignons (génétique)</term><term>Champignons (isolement et purification)</term><term>Microbiologie du sol (MeSH)</term><term>Mycobiome (MeSH)</term><term>Mycorhizes (classification)</term><term>Mycorhizes (croissance et développement)</term><term>Mycorhizes (génétique)</term><term>Mycorhizes (isolement et purification)</term><term>Pinus (microbiologie)</term><term>Racines de plante (microbiologie)</term><term>Rhizosphère (MeSH)</term><term>Sol (composition chimique)</term><term>Écosystème (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Soil</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Fungi</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Champignons</term><term>Mycorhizes</term><term>Sol</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Champignons</term><term>Mycorhizes</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Fungi</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Fungi</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Champignons</term><term>Mycorhizes</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Fungi</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Champignons</term><term>Mycorhizes</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Arbres</term><term>Pinus</term><term>Racines de plante</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Pinus</term><term>Plant Roots</term><term>Trees</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biomass</term><term>Ecosystem</term><term>Mycobiome</term><term>Rhizosphere</term><term>Soil Microbiology</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Biomasse</term><term>Microbiologie du sol</term><term>Mycobiome</term><term>Rhizosphère</term><term>Écosystème</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Forest management practices often severely affect forest ecosystem functioning. Tree removal by clearcutting is one such practice, producing severe impacts due to the total reduction of primary productivity. Here, we assessed changes to fungal community structure and decomposition activity in the soil, roots and rhizosphere of a Picea abies stand for a 2-year period following clearcutting compared to data from before tree harvest. We found that the termination of photosynthate flow through tree roots into soil is associated with profound changes in soil, both in decomposition processes and fungal community composition. The rhizosphere, representing an active compartment of high enzyme activity and high fungal biomass in the living stand, ceases to exist and starts to resemble bulk soil. Decomposing roots appear to separate from bulk soil and develop into hotspots of decomposition and important fungal biomass pools. We found no support for the involvement of ectomycorrhizal fungi in the decomposition of roots, but we found some evidence that root endophytic fungi may have an important role in the early stages of this process. In soil, activity of extracellular enzymes also decreased in the long term following the end of rhizodeposition by tree roots.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">29335638</PMID><DateCompleted><Year>2018</Year><Month>12</Month><Day>11</Day></DateCompleted><DateRevised><Year>2019</Year><Month>03</Month><Day>01</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1751-7370</ISSN><JournalIssue CitedMedium="Internet"><Volume>12</Volume><Issue>3</Issue><PubDate><Year>2018</Year><Month>03</Month></PubDate></JournalIssue><Title>The ISME journal</Title><ISOAbbreviation>ISME J</ISOAbbreviation></Journal><ArticleTitle>Clearcutting alters decomposition processes and initiates complex restructuring of fungal communities in soil and tree roots.</ArticleTitle><Pagination><MedlinePgn>692-703</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/s41396-017-0027-3</ELocationID><Abstract><AbstractText>Forest management practices often severely affect forest ecosystem functioning. Tree removal by clearcutting is one such practice, producing severe impacts due to the total reduction of primary productivity. Here, we assessed changes to fungal community structure and decomposition activity in the soil, roots and rhizosphere of a Picea abies stand for a 2-year period following clearcutting compared to data from before tree harvest. We found that the termination of photosynthate flow through tree roots into soil is associated with profound changes in soil, both in decomposition processes and fungal community composition. The rhizosphere, representing an active compartment of high enzyme activity and high fungal biomass in the living stand, ceases to exist and starts to resemble bulk soil. Decomposing roots appear to separate from bulk soil and develop into hotspots of decomposition and important fungal biomass pools. We found no support for the involvement of ectomycorrhizal fungi in the decomposition of roots, but we found some evidence that root endophytic fungi may have an important role in the early stages of this process. In soil, activity of extracellular enzymes also decreased in the long term following the end of rhizodeposition by tree roots.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Kohout</LastName><ForeName>Petr</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Laboratory of Environmental Microbiology, Institute of Microbiology of the CAS, Vídeňská 1083, 142 20, Praha 4, Czech Republic.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Mycorrhizal Symbiosis, Institute of Botany of the CAS, Zámek 1, 252 43, Průhonice, Czech Republic.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná 5, 128 44, Praha 2, Czech Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Charvátová</LastName><ForeName>Markéta</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Laboratory of Environmental Microbiology, Institute of Microbiology of the CAS, Vídeňská 1083, 142 20, Praha 4, Czech Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Štursová</LastName><ForeName>Martina</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Laboratory of Environmental Microbiology, Institute of Microbiology of the CAS, Vídeňská 1083, 142 20, Praha 4, Czech Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mašínová</LastName><ForeName>Tereza</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Laboratory of Environmental Microbiology, Institute of Microbiology of the CAS, Vídeňská 1083, 142 20, Praha 4, Czech Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tomšovský</LastName><ForeName>Michal</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Faculty of Forestry and Wood Technology, Mendel University in Brno, Zemědělská 3, 613 00, Brno, Czech Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Baldrian</LastName><ForeName>Petr</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Laboratory of Environmental Microbiology, Institute of Microbiology of the CAS, Vídeňská 1083, 142 20, Praha 4, Czech Republic. baldrian@biomed.cas.cz.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>01</Month><Day>15</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>ISME J</MedlineTA><NlmUniqueID>101301086</NlmUniqueID><ISSNLinking>1751-7362</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012987">Soil</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D018533" MajorTopicYN="N">Biomass</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017753" MajorTopicYN="N">Ecosystem</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005658" MajorTopicYN="N">Fungi</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000072761" MajorTopicYN="N">Mycobiome</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D028223" MajorTopicYN="N">Pinus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D058441" MajorTopicYN="N">Rhizosphere</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012987" MajorTopicYN="N">Soil</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014197" 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