Variation in arbuscular mycorrhizal fungal communities associated with lowland rice (Oryza sativa) along a gradient of soil salinity and arsenic contamination in Bangladesh.
Identifieur interne : 000428 ( Main/Curation ); précédent : 000427; suivant : 000429Variation in arbuscular mycorrhizal fungal communities associated with lowland rice (Oryza sativa) along a gradient of soil salinity and arsenic contamination in Bangladesh.
Auteurs : Shanaz Parvin [Belgique] ; Maarten Van Geel [Belgique] ; Tanzima Yeasmin [Bangladesh] ; Bart Lievens [Belgique] ; Olivier Honnay [Belgique]Source :
- The Science of the total environment [ 1879-1026 ] ; 2019.
Descripteurs français
- KwdFr :
- MESH :
- analyse : Arsenic, Polluants du sol.
- composition chimique : Sol.
- croissance et développement : Mycorhizes.
- microbiologie : Oryza.
- physiologie : Oryza.
- Bangladesh, Microbiologie du sol, Mycobiome, Surveillance de l'environnement, Symbiose.
- Wicri :
- geographic : Bangladesh.
English descriptors
- KwdEn :
- MESH :
- chemical , analysis : Arsenic, Soil Pollutants.
- chemical , chemistry : Soil.
- geographic : Bangladesh.
- growth & development : Mycorrhizae.
- microbiology : Oryza.
- physiology : Oryza.
- Environmental Monitoring, Mycobiome, Soil Microbiology, Symbiosis.
Abstract
Rice is an essential food crop that nourishes >50% of the world population. In many regions of Bangladesh rice production is constrained by high soil salinity and heavy metal contamination due to irrigation practices. Plants may naturally overcome such stress through mutualistic interactions with arbuscular mycorrhizal fungi (AMF). Yet, little is known regarding the diversity and composition of AMF communities in rice fields with high saline and arsenic concentration. Here we used high throughput Illumina sequencing to characterize AMF communities in rice roots from 45 Bangladeshi rice fields, along a large geographical gradient of soil salinity and arsenic contamination. We obtained 77 operational taxonomic units (OTUs, based on a sequence similarity threshold of 97%) from eight AMF families, and showed that high soil salinity and arsenic concentration are significantly associated with low AMF diversity in rice roots. Soil salinity and arsenic concentration also explained a large part of the variation in AMF community composition, but also soil pH, moisture, organic matter content and plant available soil phosphorus played an important role. Overall, our study showed that even at very high salinity and arsenic levels, some AMF OTUs are present in rice roots. Their potential role in mediating a reduction of rice stress and arsenic uptake remains to be investigated.
DOI: 10.1016/j.scitotenv.2019.05.450
PubMed: 31185402
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<term>Bangladesh (MeSH)</term>
<term>Environmental Monitoring (MeSH)</term>
<term>Mycobiome (MeSH)</term>
<term>Mycorrhizae (growth & development)</term>
<term>Oryza (microbiology)</term>
<term>Oryza (physiology)</term>
<term>Soil (chemistry)</term>
<term>Soil Microbiology (MeSH)</term>
<term>Soil Pollutants (analysis)</term>
<term>Symbiosis (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Arsenic (analyse)</term>
<term>Bangladesh (MeSH)</term>
<term>Microbiologie du sol (MeSH)</term>
<term>Mycobiome (MeSH)</term>
<term>Mycorhizes (croissance et développement)</term>
<term>Oryza (microbiologie)</term>
<term>Oryza (physiologie)</term>
<term>Polluants du sol (analyse)</term>
<term>Sol (composition chimique)</term>
<term>Surveillance de l'environnement (MeSH)</term>
<term>Symbiose (MeSH)</term>
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<term>Soil Pollutants</term>
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<front><div type="abstract" xml:lang="en">Rice is an essential food crop that nourishes >50% of the world population. In many regions of Bangladesh rice production is constrained by high soil salinity and heavy metal contamination due to irrigation practices. Plants may naturally overcome such stress through mutualistic interactions with arbuscular mycorrhizal fungi (AMF). Yet, little is known regarding the diversity and composition of AMF communities in rice fields with high saline and arsenic concentration. Here we used high throughput Illumina sequencing to characterize AMF communities in rice roots from 45 Bangladeshi rice fields, along a large geographical gradient of soil salinity and arsenic contamination. We obtained 77 operational taxonomic units (OTUs, based on a sequence similarity threshold of 97%) from eight AMF families, and showed that high soil salinity and arsenic concentration are significantly associated with low AMF diversity in rice roots. Soil salinity and arsenic concentration also explained a large part of the variation in AMF community composition, but also soil pH, moisture, organic matter content and plant available soil phosphorus played an important role. Overall, our study showed that even at very high salinity and arsenic levels, some AMF OTUs are present in rice roots. Their potential role in mediating a reduction of rice stress and arsenic uptake remains to be investigated.</div>
</front>
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<Abstract><AbstractText>Rice is an essential food crop that nourishes >50% of the world population. In many regions of Bangladesh rice production is constrained by high soil salinity and heavy metal contamination due to irrigation practices. Plants may naturally overcome such stress through mutualistic interactions with arbuscular mycorrhizal fungi (AMF). Yet, little is known regarding the diversity and composition of AMF communities in rice fields with high saline and arsenic concentration. Here we used high throughput Illumina sequencing to characterize AMF communities in rice roots from 45 Bangladeshi rice fields, along a large geographical gradient of soil salinity and arsenic contamination. We obtained 77 operational taxonomic units (OTUs, based on a sequence similarity threshold of 97%) from eight AMF families, and showed that high soil salinity and arsenic concentration are significantly associated with low AMF diversity in rice roots. Soil salinity and arsenic concentration also explained a large part of the variation in AMF community composition, but also soil pH, moisture, organic matter content and plant available soil phosphorus played an important role. Overall, our study showed that even at very high salinity and arsenic levels, some AMF OTUs are present in rice roots. Their potential role in mediating a reduction of rice stress and arsenic uptake remains to be investigated.</AbstractText>
<CopyrightInformation>Copyright © 2019 Elsevier B.V. All rights reserved.</CopyrightInformation>
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<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Parvin</LastName>
<ForeName>Shanaz</ForeName>
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