Good-Enough RFLP Matcher (GERM) program.
Identifieur interne : 003901 ( Main/Corpus ); précédent : 003900; suivant : 003902Good-Enough RFLP Matcher (GERM) program.
Auteurs : Ian A. Dickie ; Peter G. Avis ; David J. Mclaughlin ; Peter B. ReichSource :
- Mycorrhiza [ 0940-6360 ] ; 2003.
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Abstract
A spreadsheet-based program (Good-Enough RFLP Matcher or GERM) is presented that matches unknown restriction fragment length polymorphism (RFLP) patterns of ectomycorrhizal fungi to a database of known ectomycorrhizal fungi. The program uses three simple methods to determine whether a sample matches a known: (1) Forward Matching: whether every band in the unknown is present in a known sample within a given error range; (2) Backward Matching: whether every band in the known sample is present in the unknown within a given error range; (3) Sum of Bands: whether the sum of all bands in the known and unknown are similar within a given error range. The program is available through the web page of this journal.
DOI: 10.1007/s00572-003-0225-x
PubMed: 12836086
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Reich</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2003">2003</date><idno type="RBID">pubmed:12836086</idno><idno type="pmid">12836086</idno><idno type="doi">10.1007/s00572-003-0225-x</idno><idno type="wicri:Area/Main/Corpus">003901</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">003901</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Good-Enough RFLP Matcher (GERM) program.</title><author><name sortKey="Dickie, Ian A" sort="Dickie, Ian A" uniqKey="Dickie I" first="Ian A" last="Dickie">Ian A. Dickie</name><affiliation><nlm:affiliation>Department of Forest Resources, University of Minnesota, 115 Green Hall, 1530 N Cleveland Ave.,St. Paul, MN 55108, USA. dicki017@umn.edu</nlm:affiliation></affiliation></author><author><name sortKey="Avis, Peter G" sort="Avis, Peter G" uniqKey="Avis P" first="Peter G" last="Avis">Peter G. Avis</name></author><author><name sortKey="Mclaughlin, David J" sort="Mclaughlin, David J" uniqKey="Mclaughlin D" first="David J" last="Mclaughlin">David J. Mclaughlin</name></author><author><name sortKey="Reich, Peter B" sort="Reich, Peter B" uniqKey="Reich P" first="Peter B" last="Reich">Peter B. Reich</name></author></analytic><series><title level="j">Mycorrhiza</title><idno type="ISSN">0940-6360</idno><imprint><date when="2003" type="published">2003</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Database Management Systems (MeSH)</term><term>Databases, Nucleic Acid (MeSH)</term><term>Mycorrhizae (genetics)</term><term>Polymorphism, Restriction Fragment Length (MeSH)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Database Management Systems</term><term>Databases, Nucleic Acid</term><term>Polymorphism, Restriction Fragment Length</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A spreadsheet-based program (Good-Enough RFLP Matcher or GERM) is presented that matches unknown restriction fragment length polymorphism (RFLP) patterns of ectomycorrhizal fungi to a database of known ectomycorrhizal fungi. The program uses three simple methods to determine whether a sample matches a known: (1) Forward Matching: whether every band in the unknown is present in a known sample within a given error range; (2) Backward Matching: whether every band in the known sample is present in the unknown within a given error range; (3) Sum of Bands: whether the sum of all bands in the known and unknown are similar within a given error range. 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The program uses three simple methods to determine whether a sample matches a known: (1) Forward Matching: whether every band in the unknown is present in a known sample within a given error range; (2) Backward Matching: whether every band in the known sample is present in the unknown within a given error range; (3) Sum of Bands: whether the sum of all bands in the known and unknown are similar within a given error range. The program is available through the web page of this journal.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Dickie</LastName><ForeName>Ian A</ForeName><Initials>IA</Initials><AffiliationInfo><Affiliation>Department of Forest Resources, University of Minnesota, 115 Green Hall, 1530 N Cleveland Ave.,St. Paul, MN 55108, USA. dicki017@umn.edu</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Avis</LastName><ForeName>Peter G</ForeName><Initials>PG</Initials></Author><Author ValidYN="Y"><LastName>McLaughlin</LastName><ForeName>David J</ForeName><Initials>DJ</Initials></Author><Author ValidYN="Y"><LastName>Reich</LastName><ForeName>Peter B</ForeName><Initials>PB</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2003</Year><Month>02</Month><Day>11</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Mycorrhiza</MedlineTA><NlmUniqueID>100955036</NlmUniqueID><ISSNLinking>0940-6360</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D003628" MajorTopicYN="N">Database Management Systems</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D030561" MajorTopicYN="Y">Databases, Nucleic Acid</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012150" MajorTopicYN="Y">Polymorphism, Restriction Fragment Length</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2002</Year><Month>08</Month><Day>07</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2003</Year><Month>01</Month><Day>07</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2003</Year><Month>7</Month><Day>2</Day><Hour>5</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2005</Year><Month>3</Month><Day>24</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2003</Year><Month>7</Month><Day>2</Day><Hour>5</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">12836086</ArticleId><ArticleId IdType="doi">10.1007/s00572-003-0225-x</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Mol Ecol. 2001 Aug;10(8):1855-71</Citation><ArticleIdList><ArticleId IdType="pubmed">11555231</ArticleId></ArticleIdList></Reference><Reference><Citation>Methods Mol Biol. 1996;50:177-86</Citation><ArticleIdList><ArticleId IdType="pubmed">8751358</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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