Phylogenetic analysis of Glomeromycota by partial LSU rDNA sequences.
Identifieur interne : 003324 ( Main/Corpus ); précédent : 003323; suivant : 003325Phylogenetic analysis of Glomeromycota by partial LSU rDNA sequences.
Auteurs : Gladstone Alves Da Silva ; Erica Lumini ; Leonor Costa Maia ; Paola Bonfante ; Valeria BianciottoSource :
- Mycorrhiza [ 0940-6360 ] ; 2006.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA, Fungal, DNA, Ribosomal.
- chemical : DNA Primers.
- classification : Mycorrhizae.
- genetics : Mycorrhizae.
- Phylogeny, Species Specificity.
Abstract
We analyzed the large subunit ribosomal RNA (rRNA) gene [LSU ribosomal DNA (rDNA)] as a phylogenetic marker for arbuscular mycorrhizal (AM) fungal taxonomy. Partial LSU rDNA sequences were obtained from ten AM fungal isolates, comprising seven species, with two new primers designed for Glomeromycota LSU rDNA. The sequences, together with 58 sequences available from the databases, represented 31 AM fungal species. Neighbor joining and parsimony analyses were performed with the aim of evaluating the potential of the LSU rDNA for phylogenetic resolution. The resulting trees indicated that Archaeosporaceae are a basal group in Glomeromycota, Acaulosporaceae and Gigasporaceae belong to the same clade, while Glomeraceae are polyphyletic. The results support data obtained with the small subunit (SSU) rRNA gene, demonstrating that the LSU rRNA gene is a useful molecular marker for clarifying taxonomic and phylogenetic relationships in Glomeromycota.
DOI: 10.1007/s00572-005-0030-9
PubMed: 16534621
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pubmed:16534621Le document en format XML
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Prof. Nelson Chaves, s/n., 50670-420, Recife, PE, Brazil.</nlm:affiliation></affiliation></author><author><name sortKey="Lumini, Erica" sort="Lumini, Erica" uniqKey="Lumini E" first="Erica" last="Lumini">Erica Lumini</name><affiliation><nlm:affiliation>Istituto per la Protezione delle Piante (Sezione di Torino) del CNR and Dipartimento di Biologia Vegetale dell' Università-Viale P.A., Mattioli 25, 10125, Torino, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Maia, Leonor Costa" sort="Maia, Leonor Costa" uniqKey="Maia L" first="Leonor Costa" last="Maia">Leonor Costa Maia</name><affiliation><nlm:affiliation>Departamento de Micologia, CCB, Universidade Federal de Pernambuco, Av. Prof. Nelson Chaves, s/n., 50670-420, Recife, PE, Brazil.</nlm:affiliation></affiliation></author><author><name sortKey="Bonfante, Paola" sort="Bonfante, Paola" uniqKey="Bonfante P" first="Paola" last="Bonfante">Paola Bonfante</name><affiliation><nlm:affiliation>Istituto per la Protezione delle Piante (Sezione di Torino) del CNR and Dipartimento di Biologia Vegetale dell' Università-Viale P.A., Mattioli 25, 10125, Torino, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Bianciotto, Valeria" sort="Bianciotto, Valeria" uniqKey="Bianciotto V" first="Valeria" last="Bianciotto">Valeria Bianciotto</name><affiliation><nlm:affiliation>Istituto per la Protezione delle Piante (Sezione di Torino) del CNR and Dipartimento di Biologia Vegetale dell' Università-Viale P.A., Mattioli 25, 10125, Torino, Italy.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2006">2006</date><idno type="RBID">pubmed:16534621</idno><idno type="pmid">16534621</idno><idno type="doi">10.1007/s00572-005-0030-9</idno><idno type="wicri:Area/Main/Corpus">003324</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">003324</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Phylogenetic analysis of Glomeromycota by partial LSU rDNA sequences.</title><author><name sortKey="Da Silva, Gladstone Alves" sort="Da Silva, Gladstone Alves" uniqKey="Da Silva G" first="Gladstone Alves" last="Da Silva">Gladstone Alves Da Silva</name><affiliation><nlm:affiliation>Departamento de Micologia, CCB, Universidade Federal de Pernambuco, Av. Prof. Nelson Chaves, s/n., 50670-420, Recife, PE, Brazil.</nlm:affiliation></affiliation></author><author><name sortKey="Lumini, Erica" sort="Lumini, Erica" uniqKey="Lumini E" first="Erica" last="Lumini">Erica Lumini</name><affiliation><nlm:affiliation>Istituto per la Protezione delle Piante (Sezione di Torino) del CNR and Dipartimento di Biologia Vegetale dell' Università-Viale P.A., Mattioli 25, 10125, Torino, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Maia, Leonor Costa" sort="Maia, Leonor Costa" uniqKey="Maia L" first="Leonor Costa" last="Maia">Leonor Costa Maia</name><affiliation><nlm:affiliation>Departamento de Micologia, CCB, Universidade Federal de Pernambuco, Av. Prof. Nelson Chaves, s/n., 50670-420, Recife, PE, Brazil.</nlm:affiliation></affiliation></author><author><name sortKey="Bonfante, Paola" sort="Bonfante, Paola" uniqKey="Bonfante P" first="Paola" last="Bonfante">Paola Bonfante</name><affiliation><nlm:affiliation>Istituto per la Protezione delle Piante (Sezione di Torino) del CNR and Dipartimento di Biologia Vegetale dell' Università-Viale P.A., Mattioli 25, 10125, Torino, Italy.</nlm:affiliation></affiliation></author><author><name sortKey="Bianciotto, Valeria" sort="Bianciotto, Valeria" uniqKey="Bianciotto V" first="Valeria" last="Bianciotto">Valeria Bianciotto</name><affiliation><nlm:affiliation>Istituto per la Protezione delle Piante (Sezione di Torino) del CNR and Dipartimento di Biologia Vegetale dell' Università-Viale P.A., Mattioli 25, 10125, Torino, Italy.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Mycorrhiza</title><idno type="ISSN">0940-6360</idno><imprint><date when="2006" type="published">2006</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>DNA Primers (MeSH)</term><term>DNA, Fungal (genetics)</term><term>DNA, Ribosomal (genetics)</term><term>Mycorrhizae (classification)</term><term>Mycorrhizae (genetics)</term><term>Phylogeny (MeSH)</term><term>Species Specificity (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Fungal</term><term>DNA, Ribosomal</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>DNA Primers</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Phylogeny</term><term>Species Specificity</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">We analyzed the large subunit ribosomal RNA (rRNA) gene [LSU ribosomal DNA (rDNA)] as a phylogenetic marker for arbuscular mycorrhizal (AM) fungal taxonomy. Partial LSU rDNA sequences were obtained from ten AM fungal isolates, comprising seven species, with two new primers designed for Glomeromycota LSU rDNA. The sequences, together with 58 sequences available from the databases, represented 31 AM fungal species. Neighbor joining and parsimony analyses were performed with the aim of evaluating the potential of the LSU rDNA for phylogenetic resolution. The resulting trees indicated that Archaeosporaceae are a basal group in Glomeromycota, Acaulosporaceae and Gigasporaceae belong to the same clade, while Glomeraceae are polyphyletic. The results support data obtained with the small subunit (SSU) rRNA gene, demonstrating that the LSU rRNA gene is a useful molecular marker for clarifying taxonomic and phylogenetic relationships in Glomeromycota.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">16534621</PMID><DateCompleted><Year>2007</Year><Month>03</Month><Day>22</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0940-6360</ISSN><JournalIssue CitedMedium="Print"><Volume>16</Volume><Issue>3</Issue><PubDate><Year>2006</Year><Month>May</Month></PubDate></JournalIssue><Title>Mycorrhiza</Title><ISOAbbreviation>Mycorrhiza</ISOAbbreviation></Journal><ArticleTitle>Phylogenetic analysis of Glomeromycota by partial LSU rDNA sequences.</ArticleTitle><Pagination><MedlinePgn>183-189</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00572-005-0030-9</ELocationID><Abstract><AbstractText>We analyzed the large subunit ribosomal RNA (rRNA) gene [LSU ribosomal DNA (rDNA)] as a phylogenetic marker for arbuscular mycorrhizal (AM) fungal taxonomy. Partial LSU rDNA sequences were obtained from ten AM fungal isolates, comprising seven species, with two new primers designed for Glomeromycota LSU rDNA. The sequences, together with 58 sequences available from the databases, represented 31 AM fungal species. Neighbor joining and parsimony analyses were performed with the aim of evaluating the potential of the LSU rDNA for phylogenetic resolution. The resulting trees indicated that Archaeosporaceae are a basal group in Glomeromycota, Acaulosporaceae and Gigasporaceae belong to the same clade, while Glomeraceae are polyphyletic. The results support data obtained with the small subunit (SSU) rRNA gene, demonstrating that the LSU rRNA gene is a useful molecular marker for clarifying taxonomic and phylogenetic relationships in Glomeromycota.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>da Silva</LastName><ForeName>Gladstone Alves</ForeName><Initials>GA</Initials><AffiliationInfo><Affiliation>Departamento de Micologia, CCB, Universidade Federal de Pernambuco, Av. Prof. Nelson Chaves, s/n., 50670-420, Recife, PE, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lumini</LastName><ForeName>Erica</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Istituto per la Protezione delle Piante (Sezione di Torino) del CNR and Dipartimento di Biologia Vegetale dell' Università-Viale P.A., Mattioli 25, 10125, Torino, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Maia</LastName><ForeName>Leonor Costa</ForeName><Initials>LC</Initials><AffiliationInfo><Affiliation>Departamento de Micologia, CCB, Universidade Federal de Pernambuco, Av. Prof. Nelson Chaves, s/n., 50670-420, Recife, PE, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bonfante</LastName><ForeName>Paola</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Istituto per la Protezione delle Piante (Sezione di Torino) del CNR and Dipartimento di Biologia Vegetale dell' Università-Viale P.A., Mattioli 25, 10125, Torino, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bianciotto</LastName><ForeName>Valeria</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>Istituto per la Protezione delle Piante (Sezione di Torino) del CNR and Dipartimento di Biologia Vegetale dell' Università-Viale P.A., Mattioli 25, 10125, Torino, Italy.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2006</Year><Month>03</Month><Day>14</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Mycorrhiza</MedlineTA><NlmUniqueID>100955036</NlmUniqueID><ISSNLinking>0940-6360</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D017931">DNA Primers</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D017931" MajorTopicYN="N">DNA Primers</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName><QualifierName UI="Q000235" 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