Endobacteria in some ectomycorrhiza of Scots pine (Pinus sylvestris).
Identifieur interne : 003318 ( Main/Corpus ); précédent : 003317; suivant : 003319Endobacteria in some ectomycorrhiza of Scots pine (Pinus sylvestris).
Auteurs : Hironari Izumi ; Ian C. Anderson ; Ian J. Alexander ; Ken Killham ; Edward R B. MooreSource :
- FEMS microbiology ecology [ 0168-6496 ] ; 2006.
English descriptors
- KwdEn :
- Bacillus (genetics), Bacillus (growth & development), Bacillus (metabolism), Bacillus (physiology), Base Sequence (MeSH), Burkholderia (genetics), Burkholderia (growth & development), Burkholderia (metabolism), Burkholderia (physiology), DNA, Bacterial (chemistry), DNA, Bacterial (genetics), DNA, Ribosomal Spacer (chemistry), DNA, Ribosomal Spacer (genetics), Mycorrhizae (genetics), Mycorrhizae (growth & development), Mycorrhizae (physiology), Pinus sylvestris (microbiology), Plant Roots (microbiology), Polymerase Chain Reaction (MeSH), Pseudomonas (genetics), Pseudomonas (growth & development), Pseudomonas (metabolism), Pseudomonas (physiology), RNA, Ribosomal, 16S (chemistry), RNA, Ribosomal, 16S (genetics), Sequence Homology, Nucleic Acid (MeSH).
- MESH :
- chemical , chemistry : DNA, Bacterial, DNA, Ribosomal Spacer, RNA, Ribosomal, 16S.
- genetics : Bacillus, Burkholderia, DNA, Bacterial, DNA, Ribosomal Spacer, Mycorrhizae, Pseudomonas, RNA, Ribosomal, 16S.
- growth & development : Bacillus, Burkholderia, Mycorrhizae, Pseudomonas.
- metabolism : Bacillus, Burkholderia, Pseudomonas.
- microbiology : Pinus sylvestris, Plant Roots.
- physiology : Bacillus, Burkholderia, Mycorrhizae, Pseudomonas.
- Base Sequence, Polymerase Chain Reaction, Sequence Homology, Nucleic Acid.
Abstract
The diversity of cultivable endobacteria associated with four different ectomycorrhizal morphotypes (Suillus flavidus, Suillus variegatus, Russula paludosa and Russula sp.) of Scots pine (Pinus sylvestris) was analysed by restriction fragment length polymorphism profiling of PCR-amplified rDNA intergenic spacer regions and by sequence analyses of 16S rRNA genes. Ectomycorrhizal root tip surface-sterilization methods were developed and assessed for their efficiencies. Bacterial communities from surface-sterilized ectomycorrhizal root tips were different from those of ectomycorrhizal root tips without surface-sterilization for all the morphotypes studied. Endobacteria belonging to the genera Pseudomonas, Burkholderia and Bacillus were isolated from more than one ectomycorrhizal morphotype, whereas species of Rahnella, Janthinobacterium and Rhodococcus were only isolated from the single morphotypes of S. variegatus, R. paludosa and Russula sp., respectively. Some of the isolated endobacteria utilized fungal sugars more readily than typical plant sugars in carbon utilization assays.
DOI: 10.1111/j.1574-6941.2005.00048.x
PubMed: 16542403
Links to Exploration step
pubmed:16542403Le document en format XML
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Moore</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2006">2006</date><idno type="RBID">pubmed:16542403</idno><idno type="pmid">16542403</idno><idno type="doi">10.1111/j.1574-6941.2005.00048.x</idno><idno type="wicri:Area/Main/Corpus">003318</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">003318</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Endobacteria in some ectomycorrhiza of Scots pine (Pinus sylvestris).</title><author><name sortKey="Izumi, Hironari" sort="Izumi, Hironari" uniqKey="Izumi H" first="Hironari" last="Izumi">Hironari Izumi</name><affiliation><nlm:affiliation>The Macaulay Institute, Craigiebuckler, Aberdeen, UK.</nlm:affiliation></affiliation></author><author><name sortKey="Anderson, Ian C" sort="Anderson, Ian C" uniqKey="Anderson I" first="Ian C" last="Anderson">Ian C. Anderson</name></author><author><name sortKey="Alexander, Ian J" sort="Alexander, Ian J" uniqKey="Alexander I" first="Ian J" last="Alexander">Ian J. Alexander</name></author><author><name sortKey="Killham, Ken" sort="Killham, Ken" uniqKey="Killham K" first="Ken" last="Killham">Ken Killham</name></author><author><name sortKey="Moore, Edward R B" sort="Moore, Edward R B" uniqKey="Moore E" first="Edward R B" last="Moore">Edward R B. 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Ectomycorrhizal root tip surface-sterilization methods were developed and assessed for their efficiencies. Bacterial communities from surface-sterilized ectomycorrhizal root tips were different from those of ectomycorrhizal root tips without surface-sterilization for all the morphotypes studied. Endobacteria belonging to the genera Pseudomonas, Burkholderia and Bacillus were isolated from more than one ectomycorrhizal morphotype, whereas species of Rahnella, Janthinobacterium and Rhodococcus were only isolated from the single morphotypes of S. variegatus, R. paludosa and Russula sp., respectively. Some of the isolated endobacteria utilized fungal sugars more readily than typical plant sugars in carbon utilization assays.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">16542403</PMID><DateCompleted><Year>2006</Year><Month>06</Month><Day>20</Day></DateCompleted><DateRevised><Year>2006</Year><Month>11</Month><Day>15</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0168-6496</ISSN><JournalIssue CitedMedium="Print"><Volume>56</Volume><Issue>1</Issue><PubDate><Year>2006</Year><Month>Apr</Month></PubDate></JournalIssue><Title>FEMS microbiology ecology</Title><ISOAbbreviation>FEMS Microbiol Ecol</ISOAbbreviation></Journal><ArticleTitle>Endobacteria in some ectomycorrhiza of Scots pine (Pinus sylvestris).</ArticleTitle><Pagination><MedlinePgn>34-43</MedlinePgn></Pagination><Abstract><AbstractText>The diversity of cultivable endobacteria associated with four different ectomycorrhizal morphotypes (Suillus flavidus, Suillus variegatus, Russula paludosa and Russula sp.) of Scots pine (Pinus sylvestris) was analysed by restriction fragment length polymorphism profiling of PCR-amplified rDNA intergenic spacer regions and by sequence analyses of 16S rRNA genes. Ectomycorrhizal root tip surface-sterilization methods were developed and assessed for their efficiencies. Bacterial communities from surface-sterilized ectomycorrhizal root tips were different from those of ectomycorrhizal root tips without surface-sterilization for all the morphotypes studied. Endobacteria belonging to the genera Pseudomonas, Burkholderia and Bacillus were isolated from more than one ectomycorrhizal morphotype, whereas species of Rahnella, Janthinobacterium and Rhodococcus were only isolated from the single morphotypes of S. variegatus, R. paludosa and Russula sp., respectively. Some of the isolated endobacteria utilized fungal sugars more readily than typical plant sugars in carbon utilization assays.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Izumi</LastName><ForeName>Hironari</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>The Macaulay Institute, Craigiebuckler, Aberdeen, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Anderson</LastName><ForeName>Ian C</ForeName><Initials>IC</Initials></Author><Author ValidYN="Y"><LastName>Alexander</LastName><ForeName>Ian J</ForeName><Initials>IJ</Initials></Author><Author ValidYN="Y"><LastName>Killham</LastName><ForeName>Ken</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Moore</LastName><ForeName>Edward R B</ForeName><Initials>ER</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>FEMS Microbiol Ecol</MedlineTA><NlmUniqueID>8901229</NlmUniqueID><ISSNLinking>0168-6496</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D021903">DNA, Ribosomal Spacer</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001407" MajorTopicYN="N">Bacillus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019117" MajorTopicYN="N">Burkholderia</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D021903" MajorTopicYN="N">DNA, Ribosomal Spacer</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D041605" MajorTopicYN="N">Pinus sylvestris</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016133" MajorTopicYN="N">Polymerase Chain Reaction</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011549" MajorTopicYN="N">Pseudomonas</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012689" MajorTopicYN="N">Sequence Homology, Nucleic Acid</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2006</Year><Month>3</Month><Day>18</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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