Major clades of Agaricales: a multilocus phylogenetic overview.
Identifieur interne : 002F49 ( Main/Corpus ); précédent : 002F48; suivant : 002F50Major clades of Agaricales: a multilocus phylogenetic overview.
Auteurs : P Brandon Matheny ; Judd M. Curtis ; Valérie Hofstetter ; M Catherine Aime ; Jean-Marc Moncalvo ; Zai-Wei Ge ; Jason C. Slot ; Joseph F. Ammirati ; Timothy J. Baroni ; Neale L. Bougher ; Karen W. Hughes ; D Jean Lodge ; Richard W. Kerrigan ; Michelle T. Seidl ; Duur K. Aanen ; Matthew Denitis ; Graciela M. Daniele ; Dennis E. Desjardin ; Bradley R. Kropp ; Lorelei L. Norvell ; Andrew Parker ; Else C. Vellinga ; Rytas Vilgalys ; David S. HibbettSource :
- Mycologia [ 0027-5514 ]
English descriptors
- KwdEn :
- Agaricales (classification), Agaricales (genetics), Agaricales (physiology), Cluster Analysis (MeSH), DNA, Fungal (chemistry), DNA, Fungal (genetics), DNA, Ribosomal (chemistry), DNA, Ribosomal (genetics), Ecology (MeSH), Introns (genetics), Mitochondrial Proton-Translocating ATPases (genetics), Molecular Sequence Data (MeSH), Mycorrhizae (MeSH), Phylogeny (MeSH), RNA, Ribosomal (genetics), RNA, Ribosomal, 18S (genetics), RNA, Ribosomal, 5.8S (genetics), Sequence Analysis, DNA (MeSH), Sequence Homology (MeSH).
- MESH :
- chemical , chemistry : DNA, Fungal, DNA, Ribosomal.
- classification : Agaricales.
- genetics : Agaricales, DNA, Fungal, DNA, Ribosomal, Introns, Mitochondrial Proton-Translocating ATPases, RNA, Ribosomal, RNA, Ribosomal, 18S, RNA, Ribosomal, 5.8S.
- physiology : Agaricales.
- Cluster Analysis, Ecology, Molecular Sequence Data, Mycorrhizae, Phylogeny, Sequence Analysis, DNA, Sequence Homology.
Abstract
An overview of the phylogeny of the Agaricales is presented based on a multilocus analysis of a six-gene region supermatrix. Bayesian analyses of 5611 nucleotide characters of rpb1, rpb1-intron 2, rpb2 and 18S, 25S, and 5.8S ribosomal RNA genes recovered six major clades, which are recognized informally and labeled the Agaricoid, Tricholomatoid, Marasmioid, Pluteoid, Hygrophoroid and Plicaturopsidoid clades. Each clade is discussed in terms of key morphological and ecological traits. At least 11 origins of the ectomycorrhizal habit appear to have evolved in the Agaricales, with possibly as many as nine origins in the Agaricoid plus Tricholomatoid clade alone. A family-based phylogenetic classification is sketched for the Agaricales, in which 30 families, four unplaced tribes and two informally named clades are recognized.
DOI: 10.3852/mycologia.98.6.982
PubMed: 17486974
Links to Exploration step
pubmed:17486974Le document en format XML
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<term>Agaricales (physiology)</term>
<term>Cluster Analysis (MeSH)</term>
<term>DNA, Fungal (chemistry)</term>
<term>DNA, Fungal (genetics)</term>
<term>DNA, Ribosomal (chemistry)</term>
<term>DNA, Ribosomal (genetics)</term>
<term>Ecology (MeSH)</term>
<term>Introns (genetics)</term>
<term>Mitochondrial Proton-Translocating ATPases (genetics)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Mycorrhizae (MeSH)</term>
<term>Phylogeny (MeSH)</term>
<term>RNA, Ribosomal (genetics)</term>
<term>RNA, Ribosomal, 18S (genetics)</term>
<term>RNA, Ribosomal, 5.8S (genetics)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Sequence Homology (MeSH)</term>
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<term>RNA, Ribosomal, 18S</term>
<term>RNA, Ribosomal, 5.8S</term>
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<front><div type="abstract" xml:lang="en">An overview of the phylogeny of the Agaricales is presented based on a multilocus analysis of a six-gene region supermatrix. Bayesian analyses of 5611 nucleotide characters of rpb1, rpb1-intron 2, rpb2 and 18S, 25S, and 5.8S ribosomal RNA genes recovered six major clades, which are recognized informally and labeled the Agaricoid, Tricholomatoid, Marasmioid, Pluteoid, Hygrophoroid and Plicaturopsidoid clades. Each clade is discussed in terms of key morphological and ecological traits. At least 11 origins of the ectomycorrhizal habit appear to have evolved in the Agaricales, with possibly as many as nine origins in the Agaricoid plus Tricholomatoid clade alone. A family-based phylogenetic classification is sketched for the Agaricales, in which 30 families, four unplaced tribes and two informally named clades are recognized.</div>
</front>
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<DateCompleted><Year>2007</Year>
<Month>10</Month>
<Day>17</Day>
</DateCompleted>
<DateRevised><Year>2019</Year>
<Month>11</Month>
<Day>10</Day>
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<Article PubModel="Print"><Journal><ISSN IssnType="Print">0027-5514</ISSN>
<JournalIssue CitedMedium="Print"><Volume>98</Volume>
<Issue>6</Issue>
<PubDate><MedlineDate>2006 Nov-Dec</MedlineDate>
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<Title>Mycologia</Title>
<ISOAbbreviation>Mycologia</ISOAbbreviation>
</Journal>
<ArticleTitle>Major clades of Agaricales: a multilocus phylogenetic overview.</ArticleTitle>
<Pagination><MedlinePgn>982-95</MedlinePgn>
</Pagination>
<Abstract><AbstractText>An overview of the phylogeny of the Agaricales is presented based on a multilocus analysis of a six-gene region supermatrix. Bayesian analyses of 5611 nucleotide characters of rpb1, rpb1-intron 2, rpb2 and 18S, 25S, and 5.8S ribosomal RNA genes recovered six major clades, which are recognized informally and labeled the Agaricoid, Tricholomatoid, Marasmioid, Pluteoid, Hygrophoroid and Plicaturopsidoid clades. Each clade is discussed in terms of key morphological and ecological traits. At least 11 origins of the ectomycorrhizal habit appear to have evolved in the Agaricales, with possibly as many as nine origins in the Agaricoid plus Tricholomatoid clade alone. A family-based phylogenetic classification is sketched for the Agaricales, in which 30 families, four unplaced tribes and two informally named clades are recognized.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Matheny</LastName>
<ForeName>P Brandon</ForeName>
<Initials>PB</Initials>
<AffiliationInfo><Affiliation>Biology Department, Clark University, Worcester, Massachusetts 01610, USA. pmatheny@clarku.edu</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Curtis</LastName>
<ForeName>Judd M</ForeName>
<Initials>JM</Initials>
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<Author ValidYN="Y"><LastName>Hofstetter</LastName>
<ForeName>Valérie</ForeName>
<Initials>V</Initials>
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<Author ValidYN="Y"><LastName>Aime</LastName>
<ForeName>M Catherine</ForeName>
<Initials>MC</Initials>
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<Author ValidYN="Y"><LastName>Moncalvo</LastName>
<ForeName>Jean-Marc</ForeName>
<Initials>JM</Initials>
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<Author ValidYN="Y"><LastName>Ge</LastName>
<ForeName>Zai-Wei</ForeName>
<Initials>ZW</Initials>
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<Author ValidYN="Y"><LastName>Slot</LastName>
<ForeName>Jason C</ForeName>
<Initials>JC</Initials>
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<Author ValidYN="Y"><LastName>Ammirati</LastName>
<ForeName>Joseph F</ForeName>
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<Author ValidYN="Y"><LastName>Baroni</LastName>
<ForeName>Timothy J</ForeName>
<Initials>TJ</Initials>
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<ForeName>Neale L</ForeName>
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<ForeName>Dennis E</ForeName>
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<ForeName>Bradley R</ForeName>
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<Author ValidYN="Y"><LastName>Norvell</LastName>
<ForeName>Lorelei L</ForeName>
<Initials>LL</Initials>
</Author>
<Author ValidYN="Y"><LastName>Parker</LastName>
<ForeName>Andrew</ForeName>
<Initials>A</Initials>
</Author>
<Author ValidYN="Y"><LastName>Vellinga</LastName>
<ForeName>Else C</ForeName>
<Initials>EC</Initials>
</Author>
<Author ValidYN="Y"><LastName>Vilgalys</LastName>
<ForeName>Rytas</ForeName>
<Initials>R</Initials>
</Author>
<Author ValidYN="Y"><LastName>Hibbett</LastName>
<ForeName>David S</ForeName>
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<MeshHeading><DescriptorName UI="D017385" MajorTopicYN="N">Sequence Homology</DescriptorName>
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