Major clades of Agaricales: a multilocus phylogenetic overview.
Identifieur interne : 002F49 ( Main/Corpus ); précédent : 002F48; suivant : 002F50Major clades of Agaricales: a multilocus phylogenetic overview.
Auteurs : P Brandon Matheny ; Judd M. Curtis ; Valérie Hofstetter ; M Catherine Aime ; Jean-Marc Moncalvo ; Zai-Wei Ge ; Jason C. Slot ; Joseph F. Ammirati ; Timothy J. Baroni ; Neale L. Bougher ; Karen W. Hughes ; D Jean Lodge ; Richard W. Kerrigan ; Michelle T. Seidl ; Duur K. Aanen ; Matthew Denitis ; Graciela M. Daniele ; Dennis E. Desjardin ; Bradley R. Kropp ; Lorelei L. Norvell ; Andrew Parker ; Else C. Vellinga ; Rytas Vilgalys ; David S. HibbettSource :
- Mycologia [ 0027-5514 ]
English descriptors
- KwdEn :
- Agaricales (classification), Agaricales (genetics), Agaricales (physiology), Cluster Analysis (MeSH), DNA, Fungal (chemistry), DNA, Fungal (genetics), DNA, Ribosomal (chemistry), DNA, Ribosomal (genetics), Ecology (MeSH), Introns (genetics), Mitochondrial Proton-Translocating ATPases (genetics), Molecular Sequence Data (MeSH), Mycorrhizae (MeSH), Phylogeny (MeSH), RNA, Ribosomal (genetics), RNA, Ribosomal, 18S (genetics), RNA, Ribosomal, 5.8S (genetics), Sequence Analysis, DNA (MeSH), Sequence Homology (MeSH).
- MESH :
- chemical , chemistry : DNA, Fungal, DNA, Ribosomal.
- classification : Agaricales.
- genetics : Agaricales, DNA, Fungal, DNA, Ribosomal, Introns, Mitochondrial Proton-Translocating ATPases, RNA, Ribosomal, RNA, Ribosomal, 18S, RNA, Ribosomal, 5.8S.
- physiology : Agaricales.
- Cluster Analysis, Ecology, Molecular Sequence Data, Mycorrhizae, Phylogeny, Sequence Analysis, DNA, Sequence Homology.
Abstract
An overview of the phylogeny of the Agaricales is presented based on a multilocus analysis of a six-gene region supermatrix. Bayesian analyses of 5611 nucleotide characters of rpb1, rpb1-intron 2, rpb2 and 18S, 25S, and 5.8S ribosomal RNA genes recovered six major clades, which are recognized informally and labeled the Agaricoid, Tricholomatoid, Marasmioid, Pluteoid, Hygrophoroid and Plicaturopsidoid clades. Each clade is discussed in terms of key morphological and ecological traits. At least 11 origins of the ectomycorrhizal habit appear to have evolved in the Agaricales, with possibly as many as nine origins in the Agaricoid plus Tricholomatoid clade alone. A family-based phylogenetic classification is sketched for the Agaricales, in which 30 families, four unplaced tribes and two informally named clades are recognized.
DOI: 10.3852/mycologia.98.6.982
PubMed: 17486974
Links to Exploration step
pubmed:17486974Le document en format XML
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Hibbett</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2006">2006 Nov-Dec</date><idno type="RBID">pubmed:17486974</idno><idno type="pmid">17486974</idno><idno type="doi">10.3852/mycologia.98.6.982</idno><idno type="wicri:Area/Main/Corpus">002F49</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">002F49</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Major clades of Agaricales: a multilocus phylogenetic overview.</title><author><name sortKey="Matheny, P Brandon" sort="Matheny, P Brandon" uniqKey="Matheny P" first="P Brandon" last="Matheny">P Brandon Matheny</name><affiliation><nlm:affiliation>Biology Department, Clark University, Worcester, Massachusetts 01610, USA. pmatheny@clarku.edu</nlm:affiliation></affiliation></author><author><name sortKey="Curtis, Judd M" sort="Curtis, Judd M" uniqKey="Curtis J" first="Judd M" last="Curtis">Judd M. Curtis</name></author><author><name sortKey="Hofstetter, Valerie" sort="Hofstetter, Valerie" uniqKey="Hofstetter V" first="Valérie" last="Hofstetter">Valérie Hofstetter</name></author><author><name sortKey="Aime, M Catherine" sort="Aime, M Catherine" uniqKey="Aime M" first="M Catherine" last="Aime">M Catherine Aime</name></author><author><name sortKey="Moncalvo, Jean Marc" sort="Moncalvo, Jean Marc" uniqKey="Moncalvo J" first="Jean-Marc" last="Moncalvo">Jean-Marc Moncalvo</name></author><author><name sortKey="Ge, Zai Wei" sort="Ge, Zai Wei" uniqKey="Ge Z" first="Zai-Wei" last="Ge">Zai-Wei Ge</name></author><author><name sortKey="Slot, Jason C" sort="Slot, Jason C" uniqKey="Slot J" first="Jason C" last="Slot">Jason C. Slot</name></author><author><name sortKey="Ammirati, Joseph F" sort="Ammirati, Joseph F" uniqKey="Ammirati J" first="Joseph F" last="Ammirati">Joseph F. Ammirati</name></author><author><name sortKey="Baroni, Timothy J" sort="Baroni, Timothy J" uniqKey="Baroni T" first="Timothy J" last="Baroni">Timothy J. Baroni</name></author><author><name sortKey="Bougher, Neale L" sort="Bougher, Neale L" uniqKey="Bougher N" first="Neale L" last="Bougher">Neale L. Bougher</name></author><author><name sortKey="Hughes, Karen W" sort="Hughes, Karen W" uniqKey="Hughes K" first="Karen W" last="Hughes">Karen W. Hughes</name></author><author><name sortKey="Lodge, D Jean" sort="Lodge, D Jean" uniqKey="Lodge D" first="D Jean" last="Lodge">D Jean Lodge</name></author><author><name sortKey="Kerrigan, Richard W" sort="Kerrigan, Richard W" uniqKey="Kerrigan R" first="Richard W" last="Kerrigan">Richard W. Kerrigan</name></author><author><name sortKey="Seidl, Michelle T" sort="Seidl, Michelle T" uniqKey="Seidl M" first="Michelle T" last="Seidl">Michelle T. Seidl</name></author><author><name sortKey="Aanen, Duur K" sort="Aanen, Duur K" uniqKey="Aanen D" first="Duur K" last="Aanen">Duur K. Aanen</name></author><author><name sortKey="Denitis, Matthew" sort="Denitis, Matthew" uniqKey="Denitis M" first="Matthew" last="Denitis">Matthew Denitis</name></author><author><name sortKey="Daniele, Graciela M" sort="Daniele, Graciela M" uniqKey="Daniele G" first="Graciela M" last="Daniele">Graciela M. Daniele</name></author><author><name sortKey="Desjardin, Dennis E" sort="Desjardin, Dennis E" uniqKey="Desjardin D" first="Dennis E" last="Desjardin">Dennis E. Desjardin</name></author><author><name sortKey="Kropp, Bradley R" sort="Kropp, Bradley R" uniqKey="Kropp B" first="Bradley R" last="Kropp">Bradley R. Kropp</name></author><author><name sortKey="Norvell, Lorelei L" sort="Norvell, Lorelei L" uniqKey="Norvell L" first="Lorelei L" last="Norvell">Lorelei L. Norvell</name></author><author><name sortKey="Parker, Andrew" sort="Parker, Andrew" uniqKey="Parker A" first="Andrew" last="Parker">Andrew Parker</name></author><author><name sortKey="Vellinga, Else C" sort="Vellinga, Else C" uniqKey="Vellinga E" first="Else C" last="Vellinga">Else C. Vellinga</name></author><author><name sortKey="Vilgalys, Rytas" sort="Vilgalys, Rytas" uniqKey="Vilgalys R" first="Rytas" last="Vilgalys">Rytas Vilgalys</name></author><author><name sortKey="Hibbett, David S" sort="Hibbett, David S" uniqKey="Hibbett D" first="David S" last="Hibbett">David S. Hibbett</name></author></analytic><series><title level="j">Mycologia</title><idno type="ISSN">0027-5514</idno></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Agaricales (classification)</term><term>Agaricales (genetics)</term><term>Agaricales (physiology)</term><term>Cluster Analysis (MeSH)</term><term>DNA, Fungal (chemistry)</term><term>DNA, Fungal (genetics)</term><term>DNA, Ribosomal (chemistry)</term><term>DNA, Ribosomal (genetics)</term><term>Ecology (MeSH)</term><term>Introns (genetics)</term><term>Mitochondrial Proton-Translocating ATPases (genetics)</term><term>Molecular Sequence Data (MeSH)</term><term>Mycorrhizae (MeSH)</term><term>Phylogeny (MeSH)</term><term>RNA, Ribosomal (genetics)</term><term>RNA, Ribosomal, 18S (genetics)</term><term>RNA, Ribosomal, 5.8S (genetics)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Sequence Homology (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA, Fungal</term><term>DNA, Ribosomal</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Agaricales</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Agaricales</term><term>DNA, Fungal</term><term>DNA, Ribosomal</term><term>Introns</term><term>Mitochondrial Proton-Translocating ATPases</term><term>RNA, Ribosomal</term><term>RNA, Ribosomal, 18S</term><term>RNA, Ribosomal, 5.8S</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Agaricales</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Cluster Analysis</term><term>Ecology</term><term>Molecular Sequence Data</term><term>Mycorrhizae</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term><term>Sequence Homology</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">An overview of the phylogeny of the Agaricales is presented based on a multilocus analysis of a six-gene region supermatrix. Bayesian analyses of 5611 nucleotide characters of rpb1, rpb1-intron 2, rpb2 and 18S, 25S, and 5.8S ribosomal RNA genes recovered six major clades, which are recognized informally and labeled the Agaricoid, Tricholomatoid, Marasmioid, Pluteoid, Hygrophoroid and Plicaturopsidoid clades. Each clade is discussed in terms of key morphological and ecological traits. At least 11 origins of the ectomycorrhizal habit appear to have evolved in the Agaricales, with possibly as many as nine origins in the Agaricoid plus Tricholomatoid clade alone. A family-based phylogenetic classification is sketched for the Agaricales, in which 30 families, four unplaced tribes and two informally named clades are recognized.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17486974</PMID><DateCompleted><Year>2007</Year><Month>10</Month><Day>17</Day></DateCompleted><DateRevised><Year>2019</Year><Month>11</Month><Day>10</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0027-5514</ISSN><JournalIssue CitedMedium="Print"><Volume>98</Volume><Issue>6</Issue><PubDate><MedlineDate>2006 Nov-Dec</MedlineDate></PubDate></JournalIssue><Title>Mycologia</Title><ISOAbbreviation>Mycologia</ISOAbbreviation></Journal><ArticleTitle>Major clades of Agaricales: a multilocus phylogenetic overview.</ArticleTitle><Pagination><MedlinePgn>982-95</MedlinePgn></Pagination><Abstract><AbstractText>An overview of the phylogeny of the Agaricales is presented based on a multilocus analysis of a six-gene region supermatrix. Bayesian analyses of 5611 nucleotide characters of rpb1, rpb1-intron 2, rpb2 and 18S, 25S, and 5.8S ribosomal RNA genes recovered six major clades, which are recognized informally and labeled the Agaricoid, Tricholomatoid, Marasmioid, Pluteoid, Hygrophoroid and Plicaturopsidoid clades. Each clade is discussed in terms of key morphological and ecological traits. At least 11 origins of the ectomycorrhizal habit appear to have evolved in the Agaricales, with possibly as many as nine origins in the Agaricoid plus Tricholomatoid clade alone. A family-based phylogenetic classification is sketched for the Agaricales, in which 30 families, four unplaced tribes and two informally named clades are recognized.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Matheny</LastName><ForeName>P Brandon</ForeName><Initials>PB</Initials><AffiliationInfo><Affiliation>Biology Department, Clark University, Worcester, Massachusetts 01610, USA. pmatheny@clarku.edu</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Curtis</LastName><ForeName>Judd M</ForeName><Initials>JM</Initials></Author><Author ValidYN="Y"><LastName>Hofstetter</LastName><ForeName>Valérie</ForeName><Initials>V</Initials></Author><Author ValidYN="Y"><LastName>Aime</LastName><ForeName>M Catherine</ForeName><Initials>MC</Initials></Author><Author ValidYN="Y"><LastName>Moncalvo</LastName><ForeName>Jean-Marc</ForeName><Initials>JM</Initials></Author><Author ValidYN="Y"><LastName>Ge</LastName><ForeName>Zai-Wei</ForeName><Initials>ZW</Initials></Author><Author ValidYN="Y"><LastName>Slot</LastName><ForeName>Jason C</ForeName><Initials>JC</Initials></Author><Author ValidYN="Y"><LastName>Ammirati</LastName><ForeName>Joseph F</ForeName><Initials>JF</Initials></Author><Author ValidYN="Y"><LastName>Baroni</LastName><ForeName>Timothy J</ForeName><Initials>TJ</Initials></Author><Author ValidYN="Y"><LastName>Bougher</LastName><ForeName>Neale L</ForeName><Initials>NL</Initials></Author><Author ValidYN="Y"><LastName>Hughes</LastName><ForeName>Karen W</ForeName><Initials>KW</Initials></Author><Author ValidYN="Y"><LastName>Lodge</LastName><ForeName>D Jean</ForeName><Initials>DJ</Initials></Author><Author ValidYN="Y"><LastName>Kerrigan</LastName><ForeName>Richard W</ForeName><Initials>RW</Initials></Author><Author ValidYN="Y"><LastName>Seidl</LastName><ForeName>Michelle T</ForeName><Initials>MT</Initials></Author><Author ValidYN="Y"><LastName>Aanen</LastName><ForeName>Duur K</ForeName><Initials>DK</Initials></Author><Author ValidYN="Y"><LastName>DeNitis</LastName><ForeName>Matthew</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Daniele</LastName><ForeName>Graciela M</ForeName><Initials>GM</Initials></Author><Author ValidYN="Y"><LastName>Desjardin</LastName><ForeName>Dennis E</ForeName><Initials>DE</Initials></Author><Author ValidYN="Y"><LastName>Kropp</LastName><ForeName>Bradley R</ForeName><Initials>BR</Initials></Author><Author ValidYN="Y"><LastName>Norvell</LastName><ForeName>Lorelei L</ForeName><Initials>LL</Initials></Author><Author ValidYN="Y"><LastName>Parker</LastName><ForeName>Andrew</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Vellinga</LastName><ForeName>Else C</ForeName><Initials>EC</Initials></Author><Author ValidYN="Y"><LastName>Vilgalys</LastName><ForeName>Rytas</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Hibbett</LastName><ForeName>David S</ForeName><Initials>DS</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Mycologia</MedlineTA><NlmUniqueID>0400764</NlmUniqueID><ISSNLinking>0027-5514</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012335">RNA, Ribosomal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012337">RNA, Ribosomal, 18S</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012340">RNA, Ribosomal, 5.8S</NameOfSubstance></Chemical><Chemical><RegistryNumber>130527-23-0</RegistryNumber><NameOfSubstance UI="C065039">RNA, ribosomal, 25S</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 3.6.3.-</RegistryNumber><NameOfSubstance UI="D025261">Mitochondrial Proton-Translocating ATPases</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000363" MajorTopicYN="N">Agaricales</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016000" MajorTopicYN="N">Cluster Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004275" MajorTopicYN="N">DNA, Ribosomal</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004463" MajorTopicYN="N">Ecology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007438" MajorTopicYN="N">Introns</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D025261" MajorTopicYN="N">Mitochondrial Proton-Translocating ATPases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012335" MajorTopicYN="N">RNA, Ribosomal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012337" MajorTopicYN="N">RNA, Ribosomal, 18S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012340" MajorTopicYN="N">RNA, Ribosomal, 5.8S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017385" MajorTopicYN="N">Sequence Homology</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2007</Year><Month>5</Month><Day>10</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2007</Year><Month>10</Month><Day>18</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2007</Year><Month>5</Month><Day>10</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">17486974</ArticleId><ArticleId IdType="doi">10.3852/mycologia.98.6.982</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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