Preferential colonization of Solanum tuberosum L. roots by the fungus Glomus intraradices in arable soil of a potato farming area.
Identifieur interne : 002C20 ( Main/Corpus ); précédent : 002C19; suivant : 002C21Preferential colonization of Solanum tuberosum L. roots by the fungus Glomus intraradices in arable soil of a potato farming area.
Auteurs : Patrizia Cesaro ; Diederik Van Tuinen ; Andrea Copetta ; Odile Chatagnier ; Graziella Berta ; Silvio Gianinazzi ; Guido LinguaSource :
- Applied and environmental microbiology [ 1098-5336 ] ; 2008.
English descriptors
- KwdEn :
- Biodiversity (MeSH), DNA, Fungal (genetics), Genes, Fungal (MeSH), Italy (MeSH), Molecular Sequence Data (MeSH), Mycorrhizae (genetics), Mycorrhizae (isolation & purification), Mycorrhizae (physiology), Phylogeny (MeSH), Plant Roots (microbiology), Polymerase Chain Reaction (MeSH), Ribosome Subunits, Large, Bacterial (genetics), Sequence Alignment (MeSH), Sequence Analysis, DNA (MeSH), Soil Microbiology (MeSH), Solanum tuberosum (microbiology), Species Specificity (MeSH), Symbiosis (MeSH).
- MESH :
- chemical , genetics : DNA, Fungal.
- geographic : Italy.
- genetics : Mycorrhizae, Ribosome Subunits, Large, Bacterial.
- isolation & purification : Mycorrhizae.
- microbiology : Plant Roots, Solanum tuberosum.
- physiology : Mycorrhizae.
- Biodiversity, Genes, Fungal, Molecular Sequence Data, Phylogeny, Polymerase Chain Reaction, Sequence Alignment, Sequence Analysis, DNA, Soil Microbiology, Species Specificity, Symbiosis.
Abstract
The symbiosis between plant roots and arbuscular mycorrhizal (AM) fungi has been shown to affect both the diversity and productivity of agricultural communities. In this study, we characterized the AM fungal communities of Solanum tuberosum L. (potato) roots and of the bulk soil in two nearby areas of northern Italy, in order to verify if land use practices had selected any particular AM fungus with specificity to potato plants. The AM fungal large-subunit (LSU) rRNA genes were subjected to nested PCR, cloning, sequencing, and phylogenetic analyses. One hundred eighty-three LSU rRNA sequences were analyzed, and eight monophyletic ribotypes, belonging to Glomus groups A and B, were identified. AM fungal communities differed between bulk soil and potato roots, as one AM fungal ribotype, corresponding to Glomus intraradices, was much more frequent in potato roots than in soils (accounting for more than 90% of sequences from potato samples and less than 10% of sequences from soil samples). A semiquantitative heminested PCR with specific primers was used to confirm and quantify the AM fungal abundance observed by cloning. Overall results concerning the biodiversity of AM fungal communities in roots and in bulk soils from the two studied areas suggested that potato roots were preferentially colonized by one AM fungal species, G. intraradices.
DOI: 10.1128/AEM.00719-08
PubMed: 18676711
PubMed Central: PMC2547043
Links to Exploration step
pubmed:18676711Le document en format XML
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last="Berta">Graziella Berta</name></author><author><name sortKey="Gianinazzi, Silvio" sort="Gianinazzi, Silvio" uniqKey="Gianinazzi S" first="Silvio" last="Gianinazzi">Silvio Gianinazzi</name></author><author><name sortKey="Lingua, Guido" sort="Lingua, Guido" uniqKey="Lingua G" first="Guido" last="Lingua">Guido Lingua</name></author></analytic><series><title level="j">Applied and environmental microbiology</title><idno type="eISSN">1098-5336</idno><imprint><date when="2008" type="published">2008</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Biodiversity (MeSH)</term><term>DNA, Fungal (genetics)</term><term>Genes, Fungal (MeSH)</term><term>Italy (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Mycorrhizae (genetics)</term><term>Mycorrhizae (isolation & purification)</term><term>Mycorrhizae (physiology)</term><term>Phylogeny (MeSH)</term><term>Plant Roots (microbiology)</term><term>Polymerase Chain Reaction (MeSH)</term><term>Ribosome Subunits, Large, Bacterial (genetics)</term><term>Sequence Alignment (MeSH)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Soil Microbiology (MeSH)</term><term>Solanum tuberosum (microbiology)</term><term>Species Specificity (MeSH)</term><term>Symbiosis (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Fungal</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Italy</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Mycorrhizae</term><term>Ribosome Subunits, Large, Bacterial</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Roots</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biodiversity</term><term>Genes, Fungal</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Polymerase Chain Reaction</term><term>Sequence Alignment</term><term>Sequence Analysis, DNA</term><term>Soil Microbiology</term><term>Species Specificity</term><term>Symbiosis</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The symbiosis between plant roots and arbuscular mycorrhizal (AM) fungi has been shown to affect both the diversity and productivity of agricultural communities. In this study, we characterized the AM fungal communities of Solanum tuberosum L. (potato) roots and of the bulk soil in two nearby areas of northern Italy, in order to verify if land use practices had selected any particular AM fungus with specificity to potato plants. The AM fungal large-subunit (LSU) rRNA genes were subjected to nested PCR, cloning, sequencing, and phylogenetic analyses. One hundred eighty-three LSU rRNA sequences were analyzed, and eight monophyletic ribotypes, belonging to Glomus groups A and B, were identified. AM fungal communities differed between bulk soil and potato roots, as one AM fungal ribotype, corresponding to Glomus intraradices, was much more frequent in potato roots than in soils (accounting for more than 90% of sequences from potato samples and less than 10% of sequences from soil samples). A semiquantitative heminested PCR with specific primers was used to confirm and quantify the AM fungal abundance observed by cloning. Overall results concerning the biodiversity of AM fungal communities in roots and in bulk soils from the two studied areas suggested that potato roots were preferentially colonized by one AM fungal species, G. intraradices.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">18676711</PMID><DateCompleted><Year>2008</Year><Month>09</Month><Day>30</Day></DateCompleted><DateRevised><Year>2019</Year><Month>01</Month><Day>08</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1098-5336</ISSN><JournalIssue CitedMedium="Internet"><Volume>74</Volume><Issue>18</Issue><PubDate><Year>2008</Year><Month>Sep</Month></PubDate></JournalIssue><Title>Applied and environmental microbiology</Title><ISOAbbreviation>Appl Environ Microbiol</ISOAbbreviation></Journal><ArticleTitle>Preferential colonization of Solanum tuberosum L. roots by the fungus Glomus intraradices in arable soil of a potato farming area.</ArticleTitle><Pagination><MedlinePgn>5776-83</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1128/AEM.00719-08</ELocationID><Abstract><AbstractText>The symbiosis between plant roots and arbuscular mycorrhizal (AM) fungi has been shown to affect both the diversity and productivity of agricultural communities. In this study, we characterized the AM fungal communities of Solanum tuberosum L. (potato) roots and of the bulk soil in two nearby areas of northern Italy, in order to verify if land use practices had selected any particular AM fungus with specificity to potato plants. The AM fungal large-subunit (LSU) rRNA genes were subjected to nested PCR, cloning, sequencing, and phylogenetic analyses. One hundred eighty-three LSU rRNA sequences were analyzed, and eight monophyletic ribotypes, belonging to Glomus groups A and B, were identified. AM fungal communities differed between bulk soil and potato roots, as one AM fungal ribotype, corresponding to Glomus intraradices, was much more frequent in potato roots than in soils (accounting for more than 90% of sequences from potato samples and less than 10% of sequences from soil samples). A semiquantitative heminested PCR with specific primers was used to confirm and quantify the AM fungal abundance observed by cloning. 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