Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2.
Identifieur interne : 002640 ( Main/Corpus ); précédent : 002639; suivant : 002641Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2.
Auteurs : Barbara Drigo ; Agata S. Pijl ; Henk Duyts ; Anna M. Kielak ; Hannes A. Gamper ; Marco J. Houtekamer ; Henricus T S. Boschker ; Paul L E. Bodelier ; Andrew S. Whiteley ; Johannes A. Van Veen ; George A. KowalchukSource :
- Proceedings of the National Academy of Sciences of the United States of America [ 1091-6490 ] ; 2010.
English descriptors
- KwdEn :
- Atmosphere (chemistry), Bacteria (genetics), Bacteria (metabolism), Carbon (metabolism), Carbon Dioxide (metabolism), Carbon Isotopes (metabolism), Carex Plant (metabolism), Carex Plant (microbiology), Climate Change (MeSH), Ecosystem (MeSH), Festuca (metabolism), Festuca (microbiology), Fungi (genetics), Fungi (metabolism), Models, Biological (MeSH), Molecular Sequence Data (MeSH), Mycorrhizae (metabolism), Plant Roots (metabolism), Plant Roots (microbiology), RNA, Bacterial (genetics), RNA, Fungal (genetics), Soil (analysis), Soil Microbiology (MeSH).
- MESH :
- chemical , analysis : Soil.
- chemical , genetics : RNA, Bacterial, RNA, Fungal.
- chemical , metabolism : Carbon, Carbon Dioxide, Carbon Isotopes.
- chemistry : Atmosphere.
- genetics : Bacteria, Fungi.
- metabolism : Bacteria, Carex Plant, Festuca, Fungi, Mycorrhizae, Plant Roots.
- microbiology : Carex Plant, Festuca, Plant Roots.
- Climate Change, Ecosystem, Models, Biological, Molecular Sequence Data, Soil Microbiology.
Abstract
Rising atmospheric CO(2) levels are predicted to have major consequences on carbon cycling and the functioning of terrestrial ecosystems. Increased photosynthetic activity is expected, especially for C-3 plants, thereby influencing vegetation dynamics; however, little is known about the path of fixed carbon into soil-borne communities and resulting feedbacks on ecosystem function. Here, we examine how arbuscular mycorrhizal fungi (AMF) act as a major conduit in the transfer of carbon between plants and soil and how elevated atmospheric CO(2) modulates the belowground translocation pathway of plant-fixed carbon. Shifts in active AMF species under elevated atmospheric CO(2) conditions are coupled to changes within active rhizosphere bacterial and fungal communities. Thus, as opposed to simply increasing the activity of soil-borne microbes through enhanced rhizodeposition, elevated atmospheric CO(2) clearly evokes the emergence of distinct opportunistic plant-associated microbial communities. Analyses involving RNA-based stable isotope probing, neutral/phosphate lipid fatty acids stable isotope probing, community fingerprinting, and real-time PCR allowed us to trace plant-fixed carbon to the affected soil-borne microorganisms. Based on our data, we present a conceptual model in which plant-assimilated carbon is rapidly transferred to AMF, followed by a slower release from AMF to the bacterial and fungal populations well-adapted to the prevailing (myco-)rhizosphere conditions. This model provides a general framework for reappraising carbon-flow paths in soils, facilitating predictions of future interactions between rising atmospheric CO(2) concentrations and terrestrial ecosystems.
DOI: 10.1073/pnas.0912421107
PubMed: 20534474
PubMed Central: PMC2890735
Links to Exploration step
pubmed:20534474Le document en format XML
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Bodelier</name></author><author><name sortKey="Whiteley, Andrew S" sort="Whiteley, Andrew S" uniqKey="Whiteley A" first="Andrew S" last="Whiteley">Andrew S. Whiteley</name></author><author><name sortKey="Van Veen, Johannes A" sort="Van Veen, Johannes A" uniqKey="Van Veen J" first="Johannes A" last="Van Veen">Johannes A. Van Veen</name></author><author><name sortKey="Kowalchuk, George A" sort="Kowalchuk, George A" uniqKey="Kowalchuk G" first="George A" last="Kowalchuk">George A. Kowalchuk</name></author></analytic><series><title level="j">Proceedings of the National Academy of Sciences of the United States of America</title><idno type="eISSN">1091-6490</idno><imprint><date when="2010" type="published">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Atmosphere (chemistry)</term><term>Bacteria (genetics)</term><term>Bacteria (metabolism)</term><term>Carbon (metabolism)</term><term>Carbon Dioxide (metabolism)</term><term>Carbon Isotopes (metabolism)</term><term>Carex Plant (metabolism)</term><term>Carex Plant (microbiology)</term><term>Climate Change (MeSH)</term><term>Ecosystem (MeSH)</term><term>Festuca (metabolism)</term><term>Festuca (microbiology)</term><term>Fungi (genetics)</term><term>Fungi (metabolism)</term><term>Models, Biological (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Mycorrhizae (metabolism)</term><term>Plant Roots (metabolism)</term><term>Plant Roots (microbiology)</term><term>RNA, Bacterial (genetics)</term><term>RNA, Fungal (genetics)</term><term>Soil (analysis)</term><term>Soil Microbiology (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>Soil</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Bacterial</term><term>RNA, Fungal</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Carbon</term><term>Carbon Dioxide</term><term>Carbon Isotopes</term></keywords><keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Atmosphere</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Bacteria</term><term>Fungi</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Bacteria</term><term>Carex Plant</term><term>Festuca</term><term>Fungi</term><term>Mycorrhizae</term><term>Plant Roots</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Carex Plant</term><term>Festuca</term><term>Plant Roots</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Climate Change</term><term>Ecosystem</term><term>Models, Biological</term><term>Molecular Sequence Data</term><term>Soil Microbiology</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Rising atmospheric CO(2) levels are predicted to have major consequences on carbon cycling and the functioning of terrestrial ecosystems. Increased photosynthetic activity is expected, especially for C-3 plants, thereby influencing vegetation dynamics; however, little is known about the path of fixed carbon into soil-borne communities and resulting feedbacks on ecosystem function. Here, we examine how arbuscular mycorrhizal fungi (AMF) act as a major conduit in the transfer of carbon between plants and soil and how elevated atmospheric CO(2) modulates the belowground translocation pathway of plant-fixed carbon. Shifts in active AMF species under elevated atmospheric CO(2) conditions are coupled to changes within active rhizosphere bacterial and fungal communities. Thus, as opposed to simply increasing the activity of soil-borne microbes through enhanced rhizodeposition, elevated atmospheric CO(2) clearly evokes the emergence of distinct opportunistic plant-associated microbial communities. Analyses involving RNA-based stable isotope probing, neutral/phosphate lipid fatty acids stable isotope probing, community fingerprinting, and real-time PCR allowed us to trace plant-fixed carbon to the affected soil-borne microorganisms. Based on our data, we present a conceptual model in which plant-assimilated carbon is rapidly transferred to AMF, followed by a slower release from AMF to the bacterial and fungal populations well-adapted to the prevailing (myco-)rhizosphere conditions. This model provides a general framework for reappraising carbon-flow paths in soils, facilitating predictions of future interactions between rising atmospheric CO(2) concentrations and terrestrial ecosystems.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">20534474</PMID><DateCompleted><Year>2010</Year><Month>07</Month><Day>14</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1091-6490</ISSN><JournalIssue CitedMedium="Internet"><Volume>107</Volume><Issue>24</Issue><PubDate><Year>2010</Year><Month>Jun</Month><Day>15</Day></PubDate></JournalIssue><Title>Proceedings of the National Academy of Sciences of the United States of America</Title><ISOAbbreviation>Proc Natl Acad Sci U S A</ISOAbbreviation></Journal><ArticleTitle>Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2.</ArticleTitle><Pagination><MedlinePgn>10938-42</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1073/pnas.0912421107</ELocationID><Abstract><AbstractText>Rising atmospheric CO(2) levels are predicted to have major consequences on carbon cycling and the functioning of terrestrial ecosystems. Increased photosynthetic activity is expected, especially for C-3 plants, thereby influencing vegetation dynamics; however, little is known about the path of fixed carbon into soil-borne communities and resulting feedbacks on ecosystem function. Here, we examine how arbuscular mycorrhizal fungi (AMF) act as a major conduit in the transfer of carbon between plants and soil and how elevated atmospheric CO(2) modulates the belowground translocation pathway of plant-fixed carbon. Shifts in active AMF species under elevated atmospheric CO(2) conditions are coupled to changes within active rhizosphere bacterial and fungal communities. Thus, as opposed to simply increasing the activity of soil-borne microbes through enhanced rhizodeposition, elevated atmospheric CO(2) clearly evokes the emergence of distinct opportunistic plant-associated microbial communities. Analyses involving RNA-based stable isotope probing, neutral/phosphate lipid fatty acids stable isotope probing, community fingerprinting, and real-time PCR allowed us to trace plant-fixed carbon to the affected soil-borne microorganisms. Based on our data, we present a conceptual model in which plant-assimilated carbon is rapidly transferred to AMF, followed by a slower release from AMF to the bacterial and fungal populations well-adapted to the prevailing (myco-)rhizosphere conditions. This model provides a general framework for reappraising carbon-flow paths in soils, facilitating predictions of future interactions between rising atmospheric CO(2) concentrations and terrestrial ecosystems.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Drigo</LastName><ForeName>Barbara</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Department of Microbial Ecology, The Netherlands Institute of Ecology NIOO-KNAW, 6666 ZG Heteren, The Netherlands.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pijl</LastName><ForeName>Agata S</ForeName><Initials>AS</Initials></Author><Author ValidYN="Y"><LastName>Duyts</LastName><ForeName>Henk</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Kielak</LastName><ForeName>Anna M</ForeName><Initials>AM</Initials></Author><Author ValidYN="Y"><LastName>Gamper</LastName><ForeName>Hannes A</ForeName><Initials>HA</Initials></Author><Author 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