Local distribution of ectomycorrhizae-associated basidiomycetes in forest soil correlates with the degree of soil organic matter humification and available electrolytes.
Identifieur interne : 002532 ( Main/Corpus ); précédent : 002531; suivant : 002533Local distribution of ectomycorrhizae-associated basidiomycetes in forest soil correlates with the degree of soil organic matter humification and available electrolytes.
Auteurs : M. Gryndler ; L. Soukupová ; H. Gryndlerová ; P. Baldrian ; H. HršelováSource :
- Folia microbiologica [ 1874-9356 ] ; 2010.
English descriptors
- KwdEn :
- Agaricales (genetics), Agaricales (growth & development), Agaricales (isolation & purification), Basidiomycota (classification), Basidiomycota (genetics), Basidiomycota (growth & development), Basidiomycota (isolation & purification), Betula (growth & development), Betula (microbiology), Czech Republic (MeSH), Electrolytes (analysis), Mycorrhizae (growth & development), Organic Chemicals (analysis), Plant Roots (microbiology), Polymorphism, Restriction Fragment Length (MeSH), Quercus (growth & development), Quercus (microbiology), Soil (chemistry), Soil Microbiology (MeSH), Trees (growth & development), Trees (microbiology).
- MESH :
- chemical , analysis : Electrolytes, Organic Chemicals.
- chemical , chemistry : Soil.
- classification : Basidiomycota.
- genetics : Agaricales, Basidiomycota.
- growth & development : Agaricales, Basidiomycota, Betula, Mycorrhizae, Quercus, Trees.
- isolation & purification : Agaricales, Basidiomycota.
- microbiology : Betula, Plant Roots, Quercus, Trees.
- Czech Republic, Polymorphism, Restriction Fragment Length, Soil Microbiology.
Abstract
Spatial distribution of ectomycorrhizae-associated basidiomycetes was determined in oakbirch forest using terminal restriction fragment length polymorphism (T-RFLP) analysis. The data were correlated with actual soil humidity, pH, electric conductivity of the soil extract, absorbance A(465) and A(665) of water and alkali soil extracts and with the ratio A(465)/A(665) (parameter A4/A6). Natural non-homogeneity of the soil parameters was used as experimental gradient. Distance-based redundancy analysis of the T-RFLP data (with soil parameters being taken as environmental parameters) provided significant results when ITS1F-terminanted restriction fragments were analyzed. Among other fungi, a Mycena galericulata related fungus was observed to correlate negatively with A4/A6, indicating its association with highly humified soil organic matter. Positive association of other, unidentified fungi with A4/A6 was also observed. Several other unidentified fungi negatively correlated with electric conductivity of the soil extract. The results may explain nonhomogeneity of the spatial distribution of the fungi associated with ectomycorrhizae as a result of their interaction with non-homogeneous soil environment.
DOI: 10.1007/s12223-010-0076-8
PubMed: 20941580
Links to Exploration step
pubmed:20941580Le document en format XML
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Baldrian</name></author><author><name sortKey="Hrselova, H" sort="Hrselova, H" uniqKey="Hrselova H" first="H" last="Hršelová">H. Hršelová</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2010">2010</date><idno type="RBID">pubmed:20941580</idno><idno type="pmid">20941580</idno><idno type="doi">10.1007/s12223-010-0076-8</idno><idno type="wicri:Area/Main/Corpus">002532</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">002532</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Local distribution of ectomycorrhizae-associated basidiomycetes in forest soil correlates with the degree of soil organic matter humification and available electrolytes.</title><author><name sortKey="Gryndler, M" sort="Gryndler, M" uniqKey="Gryndler M" first="M" last="Gryndler">M. Gryndler</name><affiliation><nlm:affiliation>Institute of Microbiology ASCR, v.v.i, 142 20 Prague 4, Czech Republic. gryndler@biomed.cas.cz</nlm:affiliation></affiliation></author><author><name sortKey="Soukupova, L" sort="Soukupova, L" uniqKey="Soukupova L" first="L" last="Soukupová">L. Soukupová</name></author><author><name sortKey="Gryndlerova, H" sort="Gryndlerova, H" uniqKey="Gryndlerova H" first="H" last="Gryndlerová">H. Gryndlerová</name></author><author><name sortKey="Baldrian, P" sort="Baldrian, P" uniqKey="Baldrian P" first="P" last="Baldrian">P. Baldrian</name></author><author><name sortKey="Hrselova, H" sort="Hrselova, H" uniqKey="Hrselova H" first="H" last="Hršelová">H. Hršelová</name></author></analytic><series><title level="j">Folia microbiologica</title><idno type="eISSN">1874-9356</idno><imprint><date when="2010" type="published">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Agaricales (genetics)</term><term>Agaricales (growth & development)</term><term>Agaricales (isolation & purification)</term><term>Basidiomycota (classification)</term><term>Basidiomycota (genetics)</term><term>Basidiomycota (growth & development)</term><term>Basidiomycota (isolation & purification)</term><term>Betula (growth & development)</term><term>Betula (microbiology)</term><term>Czech Republic (MeSH)</term><term>Electrolytes (analysis)</term><term>Mycorrhizae (growth & development)</term><term>Organic Chemicals (analysis)</term><term>Plant Roots (microbiology)</term><term>Polymorphism, Restriction Fragment Length (MeSH)</term><term>Quercus (growth & development)</term><term>Quercus (microbiology)</term><term>Soil (chemistry)</term><term>Soil Microbiology (MeSH)</term><term>Trees (growth & development)</term><term>Trees (microbiology)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>Electrolytes</term><term>Organic Chemicals</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Soil</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Agaricales</term><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Agaricales</term><term>Basidiomycota</term><term>Betula</term><term>Mycorrhizae</term><term>Quercus</term><term>Trees</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Agaricales</term><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Betula</term><term>Plant Roots</term><term>Quercus</term><term>Trees</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Czech Republic</term><term>Polymorphism, Restriction Fragment Length</term><term>Soil Microbiology</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Spatial distribution of ectomycorrhizae-associated basidiomycetes was determined in oakbirch forest using terminal restriction fragment length polymorphism (T-RFLP) analysis. The data were correlated with actual soil humidity, pH, electric conductivity of the soil extract, absorbance A(465) and A(665) of water and alkali soil extracts and with the ratio A(465)/A(665) (parameter A4/A6). Natural non-homogeneity of the soil parameters was used as experimental gradient. Distance-based redundancy analysis of the T-RFLP data (with soil parameters being taken as environmental parameters) provided significant results when ITS1F-terminanted restriction fragments were analyzed. Among other fungi, a Mycena galericulata related fungus was observed to correlate negatively with A4/A6, indicating its association with highly humified soil organic matter. Positive association of other, unidentified fungi with A4/A6 was also observed. Several other unidentified fungi negatively correlated with electric conductivity of the soil extract. The results may explain nonhomogeneity of the spatial distribution of the fungi associated with ectomycorrhizae as a result of their interaction with non-homogeneous soil environment.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">20941580</PMID><DateCompleted><Year>2011</Year><Month>03</Month><Day>24</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1874-9356</ISSN><JournalIssue CitedMedium="Internet"><Volume>55</Volume><Issue>5</Issue><PubDate><Year>2010</Year><Month>Sep</Month></PubDate></JournalIssue><Title>Folia microbiologica</Title><ISOAbbreviation>Folia Microbiol (Praha)</ISOAbbreviation></Journal><ArticleTitle>Local distribution of ectomycorrhizae-associated basidiomycetes in forest soil correlates with the degree of soil organic matter humification and available electrolytes.</ArticleTitle><Pagination><MedlinePgn>454-60</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s12223-010-0076-8</ELocationID><Abstract><AbstractText>Spatial distribution of ectomycorrhizae-associated basidiomycetes was determined in oakbirch forest using terminal restriction fragment length polymorphism (T-RFLP) analysis. The data were correlated with actual soil humidity, pH, electric conductivity of the soil extract, absorbance A(465) and A(665) of water and alkali soil extracts and with the ratio A(465)/A(665) (parameter A4/A6). Natural non-homogeneity of the soil parameters was used as experimental gradient. Distance-based redundancy analysis of the T-RFLP data (with soil parameters being taken as environmental parameters) provided significant results when ITS1F-terminanted restriction fragments were analyzed. Among other fungi, a Mycena galericulata related fungus was observed to correlate negatively with A4/A6, indicating its association with highly humified soil organic matter. Positive association of other, unidentified fungi with A4/A6 was also observed. Several other unidentified fungi negatively correlated with electric conductivity of the soil extract. The results may explain nonhomogeneity of the spatial distribution of the fungi associated with ectomycorrhizae as a result of their interaction with non-homogeneous soil environment.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Gryndler</LastName><ForeName>M</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Institute of Microbiology ASCR, v.v.i, 142 20 Prague 4, Czech Republic. gryndler@biomed.cas.cz</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Soukupová</LastName><ForeName>L</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Gryndlerová</LastName><ForeName>H</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Baldrian</LastName><ForeName>P</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Hršelová</LastName><ForeName>H</ForeName><Initials>H</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2010</Year><Month>10</Month><Day>13</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Folia Microbiol (Praha)</MedlineTA><NlmUniqueID>0376757</NlmUniqueID><ISSNLinking>0015-5632</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004573">Electrolytes</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D009930">Organic Chemicals</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012987">Soil</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000363" MajorTopicYN="N">Agaricales</DescriptorName><QualifierName UI="Q000235" 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