High diversity of root associated fungi in both alpine and arctic Dryas octopetala.
Identifieur interne : 002497 ( Main/Corpus ); précédent : 002496; suivant : 002498High diversity of root associated fungi in both alpine and arctic Dryas octopetala.
Auteurs : Marit Frederikke Markussen Bjorb Kmo ; Tor Carlsen ; Anne Brysting ; Trude Vr Lstad ; Klaus H Iland ; Karl Inne Ugland ; Jozsef Geml ; Trond Schumacher ; H Vard KauserudSource :
- BMC plant biology [ 1471-2229 ] ; 2010.
English descriptors
- KwdEn :
- Arctic Regions (MeSH), Cell Nucleus (genetics), DNA, Fungal (chemistry), DNA, Fungal (genetics), DNA, Ribosomal Spacer (chemistry), DNA, Ribosomal Spacer (genetics), Fungi (classification), Fungi (genetics), Genetic Variation (MeSH), Geography (MeSH), Molecular Sequence Data (MeSH), Mycorrhizae (classification), Mycorrhizae (genetics), Norway (MeSH), Plant Roots (microbiology), Rosaceae (microbiology), Sequence Analysis, DNA (MeSH), Species Specificity (MeSH), Svalbard (MeSH).
- MESH :
- chemical , chemistry : DNA, Fungal, DNA, Ribosomal Spacer.
- chemical , genetics : DNA, Fungal, DNA, Ribosomal Spacer.
- geographic : Arctic Regions, Norway, Svalbard.
- classification : Fungi, Mycorrhizae.
- genetics : Cell Nucleus, Fungi, Mycorrhizae.
- microbiology : Plant Roots, Rosaceae.
- Genetic Variation, Geography, Molecular Sequence Data, Sequence Analysis, DNA, Species Specificity.
Abstract
BACKGROUND
Dryas octopetala is a widespread dwarf shrub in alpine and arctic regions that forms ectomycorrhizal (ECM) symbiotic relationships with fungi. In this study we investigated the fungal communities associated with roots of D. octopetala in alpine sites in Norway and in the High Arctic on Svalbard, where we aimed to reveal whether the fungal diversity and species composition varied across the Alpine and Arctic regions. The internal transcribed spacer (ITS) region of nuclear ribosomal DNA was used to identify the fungal communities from bulk root samples obtained from 24 plants.
RESULTS
A total of 137 operational taxonomic units (OTUs) were detected (using 97% similarity cut off during sequence clustering) and well-known ECM genera such as Cenococcum, Cortinarius, Hebeloma, Inocybe and Tomentella occurred frequently. There was no decrease in fungal diversity with increasing latitude. The overall spatial heterogeneity was high, but a weak geographical structuring of the composition of OTUs in the root systems was observed. Calculated species accumulation curves did not level off.
CONCLUSIONS
This study indicates that the diversity of fungi associated with D. octopetala does not decrease in high latitude arctic regions, which contrasts observations made in a wide spectrum of other organism groups. A high degree of patchiness was observed across root systems, but the fungal communities were nevertheless weakly spatially structured. Non-asymptotical species accumulation curves and the occurrence of a high number of singletons indicated that only a small fraction of the fungal diversity was detected.
DOI: 10.1186/1471-2229-10-244
PubMed: 21070665
PubMed Central: PMC3095326
Links to Exploration step
pubmed:21070665Le document en format XML
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Lstad</name></author><author><name sortKey="H Iland, Klaus" sort="H Iland, Klaus" uniqKey="H Iland K" first="Klaus" last="H Iland">Klaus H Iland</name></author><author><name sortKey="Ugland, Karl Inne" sort="Ugland, Karl Inne" uniqKey="Ugland K" first="Karl Inne" last="Ugland">Karl Inne Ugland</name></author><author><name sortKey="Geml, Jozsef" sort="Geml, Jozsef" uniqKey="Geml J" first="Jozsef" last="Geml">Jozsef Geml</name></author><author><name sortKey="Schumacher, Trond" sort="Schumacher, Trond" uniqKey="Schumacher T" first="Trond" last="Schumacher">Trond Schumacher</name></author><author><name sortKey="Kauserud, H Vard" sort="Kauserud, H Vard" uniqKey="Kauserud H" first="H Vard" last="Kauserud">H Vard Kauserud</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2010">2010</date><idno type="RBID">pubmed:21070665</idno><idno type="pmid">21070665</idno><idno type="doi">10.1186/1471-2229-10-244</idno><idno type="pmc">PMC3095326</idno><idno 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Brysting</name></author><author><name sortKey="Vr Lstad, Trude" sort="Vr Lstad, Trude" uniqKey="Vr Lstad T" first="Trude" last="Vr Lstad">Trude Vr Lstad</name></author><author><name sortKey="H Iland, Klaus" sort="H Iland, Klaus" uniqKey="H Iland K" first="Klaus" last="H Iland">Klaus H Iland</name></author><author><name sortKey="Ugland, Karl Inne" sort="Ugland, Karl Inne" uniqKey="Ugland K" first="Karl Inne" last="Ugland">Karl Inne Ugland</name></author><author><name sortKey="Geml, Jozsef" sort="Geml, Jozsef" uniqKey="Geml J" first="Jozsef" last="Geml">Jozsef Geml</name></author><author><name sortKey="Schumacher, Trond" sort="Schumacher, Trond" uniqKey="Schumacher T" first="Trond" last="Schumacher">Trond Schumacher</name></author><author><name sortKey="Kauserud, H Vard" sort="Kauserud, H Vard" uniqKey="Kauserud H" first="H Vard" last="Kauserud">H Vard Kauserud</name></author></analytic><series><title level="j">BMC plant biology</title><idno type="eISSN">1471-2229</idno><imprint><date when="2010" type="published">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Arctic Regions (MeSH)</term><term>Cell Nucleus (genetics)</term><term>DNA, Fungal (chemistry)</term><term>DNA, Fungal (genetics)</term><term>DNA, Ribosomal Spacer (chemistry)</term><term>DNA, Ribosomal Spacer (genetics)</term><term>Fungi (classification)</term><term>Fungi (genetics)</term><term>Genetic Variation (MeSH)</term><term>Geography (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Mycorrhizae (classification)</term><term>Mycorrhizae (genetics)</term><term>Norway (MeSH)</term><term>Plant Roots (microbiology)</term><term>Rosaceae (microbiology)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Species Specificity (MeSH)</term><term>Svalbard (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA, Fungal</term><term>DNA, Ribosomal Spacer</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Fungal</term><term>DNA, Ribosomal Spacer</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Arctic Regions</term><term>Norway</term><term>Svalbard</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Fungi</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Cell Nucleus</term><term>Fungi</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Roots</term><term>Rosaceae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genetic Variation</term><term>Geography</term><term>Molecular Sequence Data</term><term>Sequence Analysis, DNA</term><term>Species Specificity</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>Dryas octopetala is a widespread dwarf shrub in alpine and arctic regions that forms ectomycorrhizal (ECM) symbiotic relationships with fungi. In this study we investigated the fungal communities associated with roots of D. octopetala in alpine sites in Norway and in the High Arctic on Svalbard, where we aimed to reveal whether the fungal diversity and species composition varied across the Alpine and Arctic regions. The internal transcribed spacer (ITS) region of nuclear ribosomal DNA was used to identify the fungal communities from bulk root samples obtained from 24 plants.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>A total of 137 operational taxonomic units (OTUs) were detected (using 97% similarity cut off during sequence clustering) and well-known ECM genera such as Cenococcum, Cortinarius, Hebeloma, Inocybe and Tomentella occurred frequently. There was no decrease in fungal diversity with increasing latitude. The overall spatial heterogeneity was high, but a weak geographical structuring of the composition of OTUs in the root systems was observed. Calculated species accumulation curves did not level off.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b></p><p>This study indicates that the diversity of fungi associated with D. octopetala does not decrease in high latitude arctic regions, which contrasts observations made in a wide spectrum of other organism groups. A high degree of patchiness was observed across root systems, but the fungal communities were nevertheless weakly spatially structured. Non-asymptotical species accumulation curves and the occurrence of a high number of singletons indicated that only a small fraction of the fungal diversity was detected.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">21070665</PMID><DateCompleted><Year>2011</Year><Month>03</Month><Day>18</Day></DateCompleted><DateRevised><Year>2019</Year><Month>01</Month><Day>08</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2229</ISSN><JournalIssue CitedMedium="Internet"><Volume>10</Volume><PubDate><Year>2010</Year><Month>Nov</Month><Day>11</Day></PubDate></JournalIssue><Title>BMC plant biology</Title><ISOAbbreviation>BMC Plant Biol</ISOAbbreviation></Journal><ArticleTitle>High diversity of root associated fungi in both alpine and arctic Dryas octopetala.</ArticleTitle><Pagination><MedlinePgn>244</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/1471-2229-10-244</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Dryas octopetala is a widespread dwarf shrub in alpine and arctic regions that forms ectomycorrhizal (ECM) symbiotic relationships with fungi. In this study we investigated the fungal communities associated with roots of D. octopetala in alpine sites in Norway and in the High Arctic on Svalbard, where we aimed to reveal whether the fungal diversity and species composition varied across the Alpine and Arctic regions. The internal transcribed spacer (ITS) region of nuclear ribosomal DNA was used to identify the fungal communities from bulk root samples obtained from 24 plants.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">A total of 137 operational taxonomic units (OTUs) were detected (using 97% similarity cut off during sequence clustering) and well-known ECM genera such as Cenococcum, Cortinarius, Hebeloma, Inocybe and Tomentella occurred frequently. There was no decrease in fungal diversity with increasing latitude. The overall spatial heterogeneity was high, but a weak geographical structuring of the composition of OTUs in the root systems was observed. Calculated species accumulation curves did not level off.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">This study indicates that the diversity of fungi associated with D. octopetala does not decrease in high latitude arctic regions, which contrasts observations made in a wide spectrum of other organism groups. A high degree of patchiness was observed across root systems, but the fungal communities were nevertheless weakly spatially structured. Non-asymptotical species accumulation curves and the occurrence of a high number of singletons indicated that only a small fraction of the fungal diversity was detected.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bjorbækmo</LastName><ForeName>Marit Frederikke Markussen</ForeName><Initials>MF</Initials><AffiliationInfo><Affiliation>Microbial Evolution Research Group, Department of Biology, University of Oslo, PO Box 1066 Blindern, N-0316 Oslo, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Carlsen</LastName><ForeName>Tor</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Brysting</LastName><ForeName>Anne</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Vrålstad</LastName><ForeName>Trude</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Høiland</LastName><ForeName>Klaus</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Ugland</LastName><ForeName>Karl Inne</ForeName><Initials>KI</Initials></Author><Author ValidYN="Y"><LastName>Geml</LastName><ForeName>Jozsef</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Schumacher</LastName><ForeName>Trond</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Kauserud</LastName><ForeName>Håvard</ForeName><Initials>H</Initials></Author></AuthorList><Language>eng</Language><DataBankList 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