Distinct ectomycorrhizospheres share similar bacterial communities as revealed by pyrosequencing-based analysis of 16S rRNA genes.
Identifieur interne : 002081 ( Main/Corpus ); précédent : 002080; suivant : 002082Distinct ectomycorrhizospheres share similar bacterial communities as revealed by pyrosequencing-based analysis of 16S rRNA genes.
Auteurs : S. Uroz ; P. Oger ; E. Morin ; P. Frey-KlettSource :
- Applied and environmental microbiology [ 1098-5336 ] ; 2012.
English descriptors
- KwdEn :
- Bacteria (classification), Bacteria (genetics), Bacteria (isolation & purification), Basidiomycota (growth & development), Biodiversity (MeSH), Cluster Analysis (MeSH), DNA, Bacterial (chemistry), DNA, Bacterial (genetics), DNA, Ribosomal (chemistry), DNA, Ribosomal (genetics), Molecular Sequence Data (MeSH), Mycorrhizae (growth & development), Phylogeny (MeSH), RNA, Ribosomal, 16S (genetics), Rhizosphere (MeSH), Sequence Analysis, DNA (MeSH), Soil Microbiology (MeSH).
- MESH :
- chemical , chemistry : DNA, Bacterial, DNA, Ribosomal.
- classification : Bacteria.
- genetics : Bacteria, DNA, Bacterial, DNA, Ribosomal, RNA, Ribosomal, 16S.
- growth & development : Basidiomycota, Mycorrhizae.
- isolation & purification : Bacteria.
- Biodiversity, Cluster Analysis, Molecular Sequence Data, Phylogeny, Rhizosphere, Sequence Analysis, DNA, Soil Microbiology.
Abstract
Analysis of the 16S rRNA gene sequences generated from Xerocomus pruinatus and Scleroderma citrinum ectomycorrhizospheres revealed that similar bacterial communities inhabited the two ectomycorrhizospheres in terms of phyla and genera, with an enrichment of the Burkholderia genus. Compared to the bulk soil habitat, ectomycorrhizospheres hosted significantly more Alpha-, Beta-, and Gammaproteobacteria.
DOI: 10.1128/AEM.06742-11
PubMed: 22307291
PubMed Central: PMC3318831
Links to Exploration step
pubmed:22307291Le document en format XML
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<author><name sortKey="Oger, P" sort="Oger, P" uniqKey="Oger P" first="P" last="Oger">P. Oger</name>
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<author><name sortKey="Frey Klett, P" sort="Frey Klett, P" uniqKey="Frey Klett P" first="P" last="Frey-Klett">P. Frey-Klett</name>
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<term>Bacteria (genetics)</term>
<term>Bacteria (isolation & purification)</term>
<term>Basidiomycota (growth & development)</term>
<term>Biodiversity (MeSH)</term>
<term>Cluster Analysis (MeSH)</term>
<term>DNA, Bacterial (chemistry)</term>
<term>DNA, Bacterial (genetics)</term>
<term>DNA, Ribosomal (chemistry)</term>
<term>DNA, Ribosomal (genetics)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Mycorrhizae (growth & development)</term>
<term>Phylogeny (MeSH)</term>
<term>RNA, Ribosomal, 16S (genetics)</term>
<term>Rhizosphere (MeSH)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Soil Microbiology (MeSH)</term>
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<term>DNA, Ribosomal</term>
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<term>Mycorrhizae</term>
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<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Bacteria</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Biodiversity</term>
<term>Cluster Analysis</term>
<term>Molecular Sequence Data</term>
<term>Phylogeny</term>
<term>Rhizosphere</term>
<term>Sequence Analysis, DNA</term>
<term>Soil Microbiology</term>
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<front><div type="abstract" xml:lang="en">Analysis of the 16S rRNA gene sequences generated from Xerocomus pruinatus and Scleroderma citrinum ectomycorrhizospheres revealed that similar bacterial communities inhabited the two ectomycorrhizospheres in terms of phyla and genera, with an enrichment of the Burkholderia genus. Compared to the bulk soil habitat, ectomycorrhizospheres hosted significantly more Alpha-, Beta-, and Gammaproteobacteria.</div>
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<Abstract><AbstractText>Analysis of the 16S rRNA gene sequences generated from Xerocomus pruinatus and Scleroderma citrinum ectomycorrhizospheres revealed that similar bacterial communities inhabited the two ectomycorrhizospheres in terms of phyla and genera, with an enrichment of the Burkholderia genus. Compared to the bulk soil habitat, ectomycorrhizospheres hosted significantly more Alpha-, Beta-, and Gammaproteobacteria.</AbstractText>
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