Phylogenetic relationship and species delimitation of matsutake and allied species based on multilocus phylogeny and haplotype analyses.
Identifieur interne : 001F46 ( Main/Corpus ); précédent : 001F45; suivant : 001F47Phylogenetic relationship and species delimitation of matsutake and allied species based on multilocus phylogeny and haplotype analyses.
Auteurs : Yuko Ota ; Takashi Yamanaka ; Hitoshi Murata ; Hitoshi Neda ; Akira Ohta ; Masataka Kawai ; Akiyoshi Yamada ; Miki Konno ; Chihiro TanakaSource :
- Mycologia [ 0027-5514 ]
English descriptors
- KwdEn :
- Base Sequence (MeSH), DNA, Fungal (chemistry), DNA, Fungal (genetics), DNA, Ribosomal Spacer (chemistry), DNA, Ribosomal Spacer (genetics), Fruiting Bodies, Fungal (MeSH), Fungal Proteins (genetics), Genetic Variation (MeSH), Haplotypes (MeSH), Molecular Sequence Data (MeSH), Multilocus Sequence Typing (MeSH), Mycological Typing Techniques (MeSH), Mycorrhizae (classification), Mycorrhizae (genetics), Mycorrhizae (isolation & purification), Phylogeny (MeSH), Sequence Analysis, DNA (MeSH), Tracheophyta (microbiology), Trees (microbiology), Tricholoma (classification), Tricholoma (genetics), Tricholoma (isolation & purification).
- MESH :
- chemical , chemistry : DNA, Fungal, DNA, Ribosomal Spacer.
- chemical , genetics : DNA, Fungal, DNA, Ribosomal Spacer, Fungal Proteins.
- classification : Mycorrhizae, Tricholoma.
- genetics : Mycorrhizae, Tricholoma.
- isolation & purification : Mycorrhizae, Tricholoma.
- microbiology : Tracheophyta, Trees.
- Base Sequence, Fruiting Bodies, Fungal, Genetic Variation, Haplotypes, Molecular Sequence Data, Multilocus Sequence Typing, Mycological Typing Techniques, Phylogeny, Sequence Analysis, DNA.
Abstract
Tricholoma matsutake (S. Ito & S. Imai) Singer and its allied species are referred to as matsutake worldwide and are the most economically important edible mushrooms in Japan. They are widely distributed in the northern hemisphere and established an ectomycorrhizal relationship with conifer and broadleaf trees. To clarify relationships among T. matsutake and its allies, and to delimit phylogenetic species, we analyzed multilocus datasets (ITS, megB1, tef, gpd) with samples that were correctly identified based on morphological characteristics. Phylogenetic analyses clearly identified four major groups: matsutake, T. bakamatsutake, T. fulvocastaneum and T. caligatum; the latter three species were outside the matsutake group. The haplotype analyses and median-joining haplotype network analyses showed that the matsutake group included four closely related but clearly distinct taxa (T. matsutake, T. anatolicum, Tricholoma sp. from Mexico and T. magnivelare) from different geographical regions; these were considered to be distinct phylogenetic species.
DOI: 10.3852/12-068
PubMed: 22684294
Links to Exploration step
pubmed:22684294Le document en format XML
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uniqKey="Ohta A" first="Akira" last="Ohta">Akira Ohta</name></author><author><name sortKey="Kawai, Masataka" sort="Kawai, Masataka" uniqKey="Kawai M" first="Masataka" last="Kawai">Masataka Kawai</name></author><author><name sortKey="Yamada, Akiyoshi" sort="Yamada, Akiyoshi" uniqKey="Yamada A" first="Akiyoshi" last="Yamada">Akiyoshi Yamada</name></author><author><name sortKey="Konno, Miki" sort="Konno, Miki" uniqKey="Konno M" first="Miki" last="Konno">Miki Konno</name></author><author><name sortKey="Tanaka, Chihiro" sort="Tanaka, Chihiro" uniqKey="Tanaka C" first="Chihiro" last="Tanaka">Chihiro Tanaka</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2012">2012 Nov-Dec</date><idno type="RBID">pubmed:22684294</idno><idno type="pmid">22684294</idno><idno type="doi">10.3852/12-068</idno><idno type="wicri:Area/Main/Corpus">001F46</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" 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sortKey="Ohta, Akira" sort="Ohta, Akira" uniqKey="Ohta A" first="Akira" last="Ohta">Akira Ohta</name></author><author><name sortKey="Kawai, Masataka" sort="Kawai, Masataka" uniqKey="Kawai M" first="Masataka" last="Kawai">Masataka Kawai</name></author><author><name sortKey="Yamada, Akiyoshi" sort="Yamada, Akiyoshi" uniqKey="Yamada A" first="Akiyoshi" last="Yamada">Akiyoshi Yamada</name></author><author><name sortKey="Konno, Miki" sort="Konno, Miki" uniqKey="Konno M" first="Miki" last="Konno">Miki Konno</name></author><author><name sortKey="Tanaka, Chihiro" sort="Tanaka, Chihiro" uniqKey="Tanaka C" first="Chihiro" last="Tanaka">Chihiro Tanaka</name></author></analytic><series><title level="j">Mycologia</title><idno type="ISSN">0027-5514</idno></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Sequence (MeSH)</term><term>DNA, Fungal (chemistry)</term><term>DNA, Fungal (genetics)</term><term>DNA, Ribosomal Spacer 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xml:lang="en">Tricholoma matsutake (S. Ito & S. Imai) Singer and its allied species are referred to as matsutake worldwide and are the most economically important edible mushrooms in Japan. They are widely distributed in the northern hemisphere and established an ectomycorrhizal relationship with conifer and broadleaf trees. To clarify relationships among T. matsutake and its allies, and to delimit phylogenetic species, we analyzed multilocus datasets (ITS, megB1, tef, gpd) with samples that were correctly identified based on morphological characteristics. Phylogenetic analyses clearly identified four major groups: matsutake, T. bakamatsutake, T. fulvocastaneum and T. caligatum; the latter three species were outside the matsutake group. The haplotype analyses and median-joining haplotype network analyses showed that the matsutake group included four closely related but clearly distinct taxa (T. matsutake, T. anatolicum, Tricholoma sp. from Mexico and T. magnivelare) from different geographical regions; these were considered to be distinct phylogenetic species.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">22684294</PMID><DateCompleted><Year>2014</Year><Month>06</Month><Day>16</Day></DateCompleted><DateRevised><Year>2019</Year><Month>12</Month><Day>10</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0027-5514</ISSN><JournalIssue CitedMedium="Print"><Volume>104</Volume><Issue>6</Issue><PubDate><MedlineDate>2012 Nov-Dec</MedlineDate></PubDate></JournalIssue><Title>Mycologia</Title><ISOAbbreviation>Mycologia</ISOAbbreviation></Journal><ArticleTitle>Phylogenetic relationship and species delimitation of matsutake and allied species based on multilocus phylogeny and haplotype analyses.</ArticleTitle><Pagination><MedlinePgn>1369-80</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3852/12-068</ELocationID><Abstract><AbstractText>Tricholoma matsutake (S. Ito & S. Imai) Singer and its allied species are referred to as matsutake worldwide and are the most economically important edible mushrooms in Japan. They are widely distributed in the northern hemisphere and established an ectomycorrhizal relationship with conifer and broadleaf trees. To clarify relationships among T. matsutake and its allies, and to delimit phylogenetic species, we analyzed multilocus datasets (ITS, megB1, tef, gpd) with samples that were correctly identified based on morphological characteristics. Phylogenetic analyses clearly identified four major groups: matsutake, T. bakamatsutake, T. fulvocastaneum and T. caligatum; the latter three species were outside the matsutake group. The haplotype analyses and median-joining haplotype network analyses showed that the matsutake group included four closely related but clearly distinct taxa (T. matsutake, T. anatolicum, Tricholoma sp. from Mexico and T. magnivelare) from different geographical regions; these were considered to be distinct phylogenetic species.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ota</LastName><ForeName>Yuko</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Department of Forest Microbiology, Forestry and Forest Products Research Institute, Tsukuba, lbaraki, Japan. yuota@ffpri.affrc.go.jp</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yamanaka</LastName><ForeName>Takashi</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Murata</LastName><ForeName>Hitoshi</ForeName><Initials>H</Initials></Author><Author 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