What determines Alnus-associated ectomycorrhizal community diversity and specificity? A comparison of host and habitat effects at a regional scale.
Identifieur interne : 001C80 ( Main/Corpus ); précédent : 001C79; suivant : 001C81What determines Alnus-associated ectomycorrhizal community diversity and specificity? A comparison of host and habitat effects at a regional scale.
Auteurs : Mélanie Roy ; Juliette Rochet ; Sophie Manzi ; Patricia Jargeat ; Hervé Gryta ; Pierre-Arthur Moreau ; Monique GardesSource :
- The New phytologist [ 1469-8137 ] ; 2013.
English descriptors
- KwdEn :
- MESH :
- geographic : France.
- growth & development : Mycorrhizae.
- microbiology : Alnus.
- Biodiversity, Ecosystem, Geography, Host Specificity, Molecular Sequence Data, Multivariate Analysis, Soil Microbiology.
Abstract
· Global-scale analyses of ectomycorrhizal (ECM) fungi communities emphasize host plant families as the main drivers of diversity. This study aims to test, on Alnus-ECM communities, which fungi are said to be 'host-specific', to what extent host species, habitat and distance explain their alpha and beta diversity variations, and their specificity. · In France, ECM communities associated with two subgenera and five species of Alnus, were sampled on 165 trees from 39 lowland to subalpine sites. In all, 1178 internal transcribed spacer (ITS) sequences of ECM fungi clustered in 86 molecular operational taxonomic units (MOTUs). · The species richness was low but still variable, and the evenness of communities was lower on organic soils and in Corsica. Similarity between communities was influenced both by host, soil parameters, altitude and longitude, but not by climate and distance. A large majority of 'specific' fungi were shared between host species within a subgenus, and showed habitat preferences within the subgenus distribution range. · Our study confirms that Alnus ECM communities are low in diversity, highly conserved at a regional scale, and partly shared between congeneric host species. A large part of alpha and beta diversity variations remained unexplained, and other processes may shape these communities.
DOI: 10.1111/nph.12212
PubMed: 23496225
Links to Exploration step
pubmed:23496225Le document en format XML
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A comparison of host and habitat effects at a regional scale.</title><author><name sortKey="Roy, Melanie" sort="Roy, Melanie" uniqKey="Roy M" first="Mélanie" last="Roy">Mélanie Roy</name><affiliation><nlm:affiliation>Laboratoire Evolution et Diversité Biologique, Université Toulouse 3 Paul Sabatier, UMR 5174 UPS, ENFA, CNRS, 118 route de Narbonne, 31062, Toulouse Cedex, France. melanie.roy@univ-tlse3.fr</nlm:affiliation></affiliation></author><author><name sortKey="Rochet, Juliette" sort="Rochet, Juliette" uniqKey="Rochet J" first="Juliette" last="Rochet">Juliette Rochet</name></author><author><name sortKey="Manzi, Sophie" sort="Manzi, Sophie" uniqKey="Manzi S" first="Sophie" last="Manzi">Sophie Manzi</name></author><author><name sortKey="Jargeat, Patricia" sort="Jargeat, Patricia" uniqKey="Jargeat P" first="Patricia" last="Jargeat">Patricia Jargeat</name></author><author><name sortKey="Gryta, Herve" sort="Gryta, Herve" uniqKey="Gryta H" first="Hervé" last="Gryta">Hervé Gryta</name></author><author><name sortKey="Moreau, Pierre Arthur" sort="Moreau, Pierre Arthur" uniqKey="Moreau P" first="Pierre-Arthur" last="Moreau">Pierre-Arthur Moreau</name></author><author><name sortKey="Gardes, Monique" sort="Gardes, Monique" uniqKey="Gardes M" first="Monique" last="Gardes">Monique Gardes</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2013">2013</date><idno type="RBID">pubmed:23496225</idno><idno type="pmid">23496225</idno><idno type="doi">10.1111/nph.12212</idno><idno type="wicri:Area/Main/Corpus">001C80</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001C80</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">What determines Alnus-associated ectomycorrhizal community diversity and specificity? A comparison of host and habitat effects at a regional scale.</title><author><name sortKey="Roy, Melanie" sort="Roy, Melanie" uniqKey="Roy M" first="Mélanie" last="Roy">Mélanie Roy</name><affiliation><nlm:affiliation>Laboratoire Evolution et Diversité Biologique, Université Toulouse 3 Paul Sabatier, UMR 5174 UPS, ENFA, CNRS, 118 route de Narbonne, 31062, Toulouse Cedex, France. melanie.roy@univ-tlse3.fr</nlm:affiliation></affiliation></author><author><name sortKey="Rochet, Juliette" sort="Rochet, Juliette" uniqKey="Rochet J" first="Juliette" last="Rochet">Juliette Rochet</name></author><author><name sortKey="Manzi, Sophie" sort="Manzi, Sophie" uniqKey="Manzi S" first="Sophie" last="Manzi">Sophie Manzi</name></author><author><name sortKey="Jargeat, Patricia" sort="Jargeat, Patricia" uniqKey="Jargeat P" first="Patricia" last="Jargeat">Patricia Jargeat</name></author><author><name sortKey="Gryta, Herve" sort="Gryta, Herve" uniqKey="Gryta H" first="Hervé" last="Gryta">Hervé Gryta</name></author><author><name sortKey="Moreau, Pierre Arthur" sort="Moreau, Pierre Arthur" uniqKey="Moreau P" first="Pierre-Arthur" last="Moreau">Pierre-Arthur Moreau</name></author><author><name sortKey="Gardes, Monique" sort="Gardes, Monique" uniqKey="Gardes M" first="Monique" last="Gardes">Monique Gardes</name></author></analytic><series><title level="j">The New phytologist</title><idno type="eISSN">1469-8137</idno><imprint><date when="2013" type="published">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Alnus (microbiology)</term><term>Biodiversity (MeSH)</term><term>Ecosystem (MeSH)</term><term>France (MeSH)</term><term>Geography (MeSH)</term><term>Host Specificity (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Multivariate Analysis (MeSH)</term><term>Mycorrhizae (growth & development)</term><term>Soil Microbiology (MeSH)</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>France</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Alnus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biodiversity</term><term>Ecosystem</term><term>Geography</term><term>Host Specificity</term><term>Molecular Sequence Data</term><term>Multivariate Analysis</term><term>Soil Microbiology</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">· Global-scale analyses of ectomycorrhizal (ECM) fungi communities emphasize host plant families as the main drivers of diversity. This study aims to test, on Alnus-ECM communities, which fungi are said to be 'host-specific', to what extent host species, habitat and distance explain their alpha and beta diversity variations, and their specificity. · In France, ECM communities associated with two subgenera and five species of Alnus, were sampled on 165 trees from 39 lowland to subalpine sites. In all, 1178 internal transcribed spacer (ITS) sequences of ECM fungi clustered in 86 molecular operational taxonomic units (MOTUs). · The species richness was low but still variable, and the evenness of communities was lower on organic soils and in Corsica. Similarity between communities was influenced both by host, soil parameters, altitude and longitude, but not by climate and distance. A large majority of 'specific' fungi were shared between host species within a subgenus, and showed habitat preferences within the subgenus distribution range. · Our study confirms that Alnus ECM communities are low in diversity, highly conserved at a regional scale, and partly shared between congeneric host species. A large part of alpha and beta diversity variations remained unexplained, and other processes may shape these communities.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23496225</PMID><DateCompleted><Year>2013</Year><Month>12</Month><Day>03</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1469-8137</ISSN><JournalIssue CitedMedium="Internet"><Volume>198</Volume><Issue>4</Issue><PubDate><Year>2013</Year><Month>Jun</Month></PubDate></JournalIssue><Title>The New phytologist</Title><ISOAbbreviation>New Phytol</ISOAbbreviation></Journal><ArticleTitle>What determines Alnus-associated ectomycorrhizal community diversity and specificity? A comparison of host and habitat effects at a regional scale.</ArticleTitle><Pagination><MedlinePgn>1228-38</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/nph.12212</ELocationID><Abstract><AbstractText>· Global-scale analyses of ectomycorrhizal (ECM) fungi communities emphasize host plant families as the main drivers of diversity. This study aims to test, on Alnus-ECM communities, which fungi are said to be 'host-specific', to what extent host species, habitat and distance explain their alpha and beta diversity variations, and their specificity. · In France, ECM communities associated with two subgenera and five species of Alnus, were sampled on 165 trees from 39 lowland to subalpine sites. In all, 1178 internal transcribed spacer (ITS) sequences of ECM fungi clustered in 86 molecular operational taxonomic units (MOTUs). · The species richness was low but still variable, and the evenness of communities was lower on organic soils and in Corsica. Similarity between communities was influenced both by host, soil parameters, altitude and longitude, but not by climate and distance. A large majority of 'specific' fungi were shared between host species within a subgenus, and showed habitat preferences within the subgenus distribution range. · Our study confirms that Alnus ECM communities are low in diversity, highly conserved at a regional scale, and partly shared between congeneric host species. A large part of alpha and beta diversity variations remained unexplained, and other processes may shape these communities.</AbstractText><CopyrightInformation>© 2013 The Authors. New Phytologist © 2013 New Phytologist Trust.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Roy</LastName><ForeName>Mélanie</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Laboratoire Evolution et Diversité Biologique, Université Toulouse 3 Paul Sabatier, UMR 5174 UPS, ENFA, CNRS, 118 route de Narbonne, 31062, Toulouse Cedex, France. melanie.roy@univ-tlse3.fr</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rochet</LastName><ForeName>Juliette</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Manzi</LastName><ForeName>Sophie</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Jargeat</LastName><ForeName>Patricia</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Gryta</LastName><ForeName>Hervé</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Moreau</LastName><ForeName>Pierre-Arthur</ForeName><Initials>PA</Initials></Author><Author ValidYN="Y"><LastName>Gardes</LastName><ForeName>Monique</ForeName><Initials>M</Initials></Author></AuthorList><Language>eng</Language><DataBankList 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