Truffle brûlés have an impact on the diversity of soil bacterial communities.
Identifieur interne : 001C24 ( Main/Corpus ); précédent : 001C23; suivant : 001C25Truffle brûlés have an impact on the diversity of soil bacterial communities.
Auteurs : Antonietta Mello ; Guo-Chun Ding ; Yvette M. Piceno ; Chiara Napoli ; Lauren M. Tom ; Todd Z. Desantis ; Gary L. Andersen ; Kornelia Smalla ; Paola BonfanteSource :
- PloS one [ 1932-6203 ] ; 2013.
English descriptors
- KwdEn :
- Actinobacteria (classification), Actinobacteria (genetics), Bacillus (classification), Bacillus (genetics), Biodiversity (MeSH), DNA, Archaeal (genetics), DNA, Bacterial (genetics), DNA, Fungal (genetics), Denaturing Gradient Gel Electrophoresis (MeSH), France (MeSH), Microarray Analysis (MeSH), Mycorrhizae (classification), Mycorrhizae (genetics), Phylogeny (MeSH), Plant Tubers (microbiology), Proteobacteria (classification), Proteobacteria (genetics), Pseudomonas (classification), Pseudomonas (genetics), Quercus (microbiology), RNA, Ribosomal, 16S (classification), RNA, Ribosomal, 16S (genetics), Soil Microbiology (MeSH), Symbiosis (MeSH).
- MESH :
- chemical , classification : RNA, Ribosomal, 16S.
- chemical , genetics : DNA, Archaeal, DNA, Bacterial, DNA, Fungal, RNA, Ribosomal, 16S.
- geographic : France.
- classification : Actinobacteria, Bacillus, Mycorrhizae, Proteobacteria, Pseudomonas.
- genetics : Actinobacteria, Bacillus, Mycorrhizae, Proteobacteria, Pseudomonas.
- microbiology : Plant Tubers, Quercus.
- Biodiversity, Denaturing Gradient Gel Electrophoresis, Microarray Analysis, Phylogeny, Soil Microbiology, Symbiosis.
Abstract
BACKGROUND
The development of Tuber melanosporum mycorrhizal symbiosis is associated with the production of an area devoid of vegetation (commonly referred to by the French word 'brûlé') around the symbiotic plants and where the fruiting bodies of T. melanosporum are usually collected. The extent of the ecological impact of such an area is still being discovered. While the relationship between T. melanosporum and the other fungi present in the brûlé has been assessed, no data are available on the relationship between this fungus and the bacteria inhabiting the brûlé.
METHODOLOGY/PRINCIPAL FINDINGS
We used DGGE and DNA microarrays of 16S rRNA gene fragments to compare the bacterial and archaeal communities inside and outside of truffle brûlés. Soil samples were collected in 2008 from four productive T. melanosporum/Quercus pubescens truffle-grounds located in Cahors, France, showing characteristic truffle brûlé. All the samples were analyzed by DGGE and one truffle-ground was analyzed also using phylogenetic microarrays. DGGE profiles showed differences in the bacterial community composition, and the microarrays revealed a few differences in relative richness between the brûlé interior and exterior zones, as well as differences in the relative abundance of several taxa.
CONCLUSIONS/SIGNIFICANCE
The different signal intensities we have measured for members of bacteria and archaea inside versus outside the brûlé are the first demonstration, to our knowledge, that not only fungal communities, but also other microorganisms are affected by T. melanosporum. Firmicutes (e.g., Bacillus), several genera of Actinobacteria, and a few Cyanobacteria had greater representation inside the brûlé compared with outside, whereas Pseudomonas and several genera within the class Flavobacteriaceae had higher relative abundances outside the brûlé. The findings from this study may contribute to future searches for microbial bio-indicators of brûlés.
DOI: 10.1371/journal.pone.0061945
PubMed: 23667413
PubMed Central: PMC3640031
Links to Exploration step
pubmed:23667413Le document en format XML
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Tom</name></author><author><name sortKey="Desantis, Todd Z" sort="Desantis, Todd Z" uniqKey="Desantis T" first="Todd Z" last="Desantis">Todd Z. Desantis</name></author><author><name sortKey="Andersen, Gary L" sort="Andersen, Gary L" uniqKey="Andersen G" first="Gary L" last="Andersen">Gary L. 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Piceno</name></author><author><name sortKey="Napoli, Chiara" sort="Napoli, Chiara" uniqKey="Napoli C" first="Chiara" last="Napoli">Chiara Napoli</name></author><author><name sortKey="Tom, Lauren M" sort="Tom, Lauren M" uniqKey="Tom L" first="Lauren M" last="Tom">Lauren M. Tom</name></author><author><name sortKey="Desantis, Todd Z" sort="Desantis, Todd Z" uniqKey="Desantis T" first="Todd Z" last="Desantis">Todd Z. Desantis</name></author><author><name sortKey="Andersen, Gary L" sort="Andersen, Gary L" uniqKey="Andersen G" first="Gary L" last="Andersen">Gary L. Andersen</name></author><author><name sortKey="Smalla, Kornelia" sort="Smalla, Kornelia" uniqKey="Smalla K" first="Kornelia" last="Smalla">Kornelia Smalla</name></author><author><name sortKey="Bonfante, Paola" sort="Bonfante, Paola" uniqKey="Bonfante P" first="Paola" last="Bonfante">Paola Bonfante</name></author></analytic><series><title level="j">PloS one</title><idno type="eISSN">1932-6203</idno><imprint><date when="2013" type="published">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Actinobacteria (classification)</term><term>Actinobacteria (genetics)</term><term>Bacillus (classification)</term><term>Bacillus (genetics)</term><term>Biodiversity (MeSH)</term><term>DNA, Archaeal (genetics)</term><term>DNA, Bacterial (genetics)</term><term>DNA, Fungal (genetics)</term><term>Denaturing Gradient Gel Electrophoresis (MeSH)</term><term>France (MeSH)</term><term>Microarray Analysis (MeSH)</term><term>Mycorrhizae (classification)</term><term>Mycorrhizae (genetics)</term><term>Phylogeny (MeSH)</term><term>Plant Tubers (microbiology)</term><term>Proteobacteria (classification)</term><term>Proteobacteria (genetics)</term><term>Pseudomonas (classification)</term><term>Pseudomonas (genetics)</term><term>Quercus (microbiology)</term><term>RNA, Ribosomal, 16S (classification)</term><term>RNA, Ribosomal, 16S (genetics)</term><term>Soil Microbiology (MeSH)</term><term>Symbiosis (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="classification" xml:lang="en"><term>RNA, Ribosomal, 16S</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Archaeal</term><term>DNA, Bacterial</term><term>DNA, Fungal</term><term>RNA, Ribosomal, 16S</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>France</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Actinobacteria</term><term>Bacillus</term><term>Mycorrhizae</term><term>Proteobacteria</term><term>Pseudomonas</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Actinobacteria</term><term>Bacillus</term><term>Mycorrhizae</term><term>Proteobacteria</term><term>Pseudomonas</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Tubers</term><term>Quercus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biodiversity</term><term>Denaturing Gradient Gel Electrophoresis</term><term>Microarray Analysis</term><term>Phylogeny</term><term>Soil Microbiology</term><term>Symbiosis</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>The development of Tuber melanosporum mycorrhizal symbiosis is associated with the production of an area devoid of vegetation (commonly referred to by the French word 'brûlé') around the symbiotic plants and where the fruiting bodies of T. melanosporum are usually collected. The extent of the ecological impact of such an area is still being discovered. While the relationship between T. melanosporum and the other fungi present in the brûlé has been assessed, no data are available on the relationship between this fungus and the bacteria inhabiting the brûlé.</p></div><div type="abstract" xml:lang="en"><p><b>METHODOLOGY/PRINCIPAL FINDINGS</b></p><p>We used DGGE and DNA microarrays of 16S rRNA gene fragments to compare the bacterial and archaeal communities inside and outside of truffle brûlés. Soil samples were collected in 2008 from four productive T. melanosporum/Quercus pubescens truffle-grounds located in Cahors, France, showing characteristic truffle brûlé. All the samples were analyzed by DGGE and one truffle-ground was analyzed also using phylogenetic microarrays. DGGE profiles showed differences in the bacterial community composition, and the microarrays revealed a few differences in relative richness between the brûlé interior and exterior zones, as well as differences in the relative abundance of several taxa.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS/SIGNIFICANCE</b></p><p>The different signal intensities we have measured for members of bacteria and archaea inside versus outside the brûlé are the first demonstration, to our knowledge, that not only fungal communities, but also other microorganisms are affected by T. melanosporum. Firmicutes (e.g., Bacillus), several genera of Actinobacteria, and a few Cyanobacteria had greater representation inside the brûlé compared with outside, whereas Pseudomonas and several genera within the class Flavobacteriaceae had higher relative abundances outside the brûlé. The findings from this study may contribute to future searches for microbial bio-indicators of brûlés.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23667413</PMID><DateCompleted><Year>2013</Year><Month>12</Month><Day>09</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic-Print"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN><JournalIssue CitedMedium="Internet"><Volume>8</Volume><Issue>4</Issue><PubDate><Year>2013</Year></PubDate></JournalIssue><Title>PloS one</Title><ISOAbbreviation>PLoS One</ISOAbbreviation></Journal><ArticleTitle>Truffle brûlés have an impact on the diversity of soil bacterial communities.</ArticleTitle><Pagination><MedlinePgn>e61945</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0061945</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">The development of Tuber melanosporum mycorrhizal symbiosis is associated with the production of an area devoid of vegetation (commonly referred to by the French word 'brûlé') around the symbiotic plants and where the fruiting bodies of T. melanosporum are usually collected. The extent of the ecological impact of such an area is still being discovered. While the relationship between T. melanosporum and the other fungi present in the brûlé has been assessed, no data are available on the relationship between this fungus and the bacteria inhabiting the brûlé.</AbstractText><AbstractText Label="METHODOLOGY/PRINCIPAL FINDINGS" NlmCategory="RESULTS">We used DGGE and DNA microarrays of 16S rRNA gene fragments to compare the bacterial and archaeal communities inside and outside of truffle brûlés. Soil samples were collected in 2008 from four productive T. melanosporum/Quercus pubescens truffle-grounds located in Cahors, France, showing characteristic truffle brûlé. All the samples were analyzed by DGGE and one truffle-ground was analyzed also using phylogenetic microarrays. DGGE profiles showed differences in the bacterial community composition, and the microarrays revealed a few differences in relative richness between the brûlé interior and exterior zones, as well as differences in the relative abundance of several taxa.</AbstractText><AbstractText Label="CONCLUSIONS/SIGNIFICANCE" NlmCategory="CONCLUSIONS">The different signal intensities we have measured for members of bacteria and archaea inside versus outside the brûlé are the first demonstration, to our knowledge, that not only fungal communities, but also other microorganisms are affected by T. melanosporum. Firmicutes (e.g., Bacillus), several genera of Actinobacteria, and a few Cyanobacteria had greater representation inside the brûlé compared with outside, whereas Pseudomonas and several genera within the class Flavobacteriaceae had higher relative abundances outside the brûlé. The findings from this study may contribute to future searches for microbial bio-indicators of brûlés.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Mello</LastName><ForeName>Antonietta</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Plant Protection Institute, Turin UOS, CNR, Italy. a.mello@ipp.cnr.it</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ding</LastName><ForeName>Guo-Chun</ForeName><Initials>GC</Initials></Author><Author ValidYN="Y"><LastName>Piceno</LastName><ForeName>Yvette M</ForeName><Initials>YM</Initials></Author><Author ValidYN="Y"><LastName>Napoli</LastName><ForeName>Chiara</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Tom</LastName><ForeName>Lauren M</ForeName><Initials>LM</Initials></Author><Author ValidYN="Y"><LastName>DeSantis</LastName><ForeName>Todd Z</ForeName><Initials>TZ</Initials></Author><Author ValidYN="Y"><LastName>Andersen</LastName><ForeName>Gary L</ForeName><Initials>GL</Initials></Author><Author ValidYN="Y"><LastName>Smalla</LastName><ForeName>Kornelia</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Bonfante</LastName><ForeName>Paola</ForeName><Initials>P</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2013</Year><Month>04</Month><Day>30</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>PLoS One</MedlineTA><NlmUniqueID>101285081</NlmUniqueID><ISSNLinking>1932-6203</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D019641">DNA, Archaeal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, 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|texte= Truffle brûlés have an impact on the diversity of soil bacterial communities.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Corpus/RBID.i -Sk "pubmed:23667413" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd \
| NlmPubMed2Wicri -a MycorrhizaeV1
| This area was generated with Dilib version V0.6.37. |  |