Community composition of root-associated fungi in a Quercus-dominated temperate forest: "codominance" of mycorrhizal and root-endophytic fungi.
Identifieur interne : 001B89 ( Main/Corpus ); précédent : 001B88; suivant : 001B90Community composition of root-associated fungi in a Quercus-dominated temperate forest: "codominance" of mycorrhizal and root-endophytic fungi.
Auteurs : Hirokazu Toju ; Satoshi Yamamoto ; Hirotoshi Sato ; Akifumi S. Tanabe ; Gregory S. Gilbert ; Kohmei KadowakiSource :
- Ecology and evolution [ 2045-7758 ] ; 2013.
Abstract
In terrestrial ecosystems, plant roots are colonized by various clades of mycorrhizal and endophytic fungi. Focused on the root systems of an oak-dominated temperate forest in Japan, we used 454 pyrosequencing to explore how phylogenetically diverse fungi constitute an ecological community of multiple ecotypes. In total, 345 operational taxonomic units (OTUs) of fungi were found from 159 terminal-root samples from 12 plant species occurring in the forest. Due to the dominance of an oak species (Quercus serrata), diverse ectomycorrhizal clades such as Russula, Lactarius, Cortinarius, Tomentella, Amanita, Boletus, and Cenococcum were observed. Unexpectedly, the root-associated fungal community was dominated by root-endophytic ascomycetes in Helotiales, Chaetothyriales, and Rhytismatales. Overall, 55.3% of root samples were colonized by both the commonly observed ascomycetes and ectomycorrhizal fungi; 75.0% of the root samples of the dominant Q. serrata were so cocolonized. Overall, this study revealed that root-associated fungal communities of oak-dominated temperate forests were dominated not only by ectomycorrhizal fungi but also by diverse root endophytes and that potential ecological interactions between the two ecotypes may be important to understand the complex assembly processes of belowground fungal communities.
DOI: 10.1002/ece3.546
PubMed: 23762515
PubMed Central: PMC3678483
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pubmed:23762515Le document en format XML
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<author><name sortKey="Toju, Hirokazu" sort="Toju, Hirokazu" uniqKey="Toju H" first="Hirokazu" last="Toju">Hirokazu Toju</name>
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<front><div type="abstract" xml:lang="en">In terrestrial ecosystems, plant roots are colonized by various clades of mycorrhizal and endophytic fungi. Focused on the root systems of an oak-dominated temperate forest in Japan, we used 454 pyrosequencing to explore how phylogenetically diverse fungi constitute an ecological community of multiple ecotypes. In total, 345 operational taxonomic units (OTUs) of fungi were found from 159 terminal-root samples from 12 plant species occurring in the forest. Due to the dominance of an oak species (Quercus serrata), diverse ectomycorrhizal clades such as Russula, Lactarius, Cortinarius, Tomentella, Amanita, Boletus, and Cenococcum were observed. Unexpectedly, the root-associated fungal community was dominated by root-endophytic ascomycetes in Helotiales, Chaetothyriales, and Rhytismatales. Overall, 55.3% of root samples were colonized by both the commonly observed ascomycetes and ectomycorrhizal fungi; 75.0% of the root samples of the dominant Q. serrata were so cocolonized. Overall, this study revealed that root-associated fungal communities of oak-dominated temperate forests were dominated not only by ectomycorrhizal fungi but also by diverse root endophytes and that potential ecological interactions between the two ecotypes may be important to understand the complex assembly processes of belowground fungal communities.</div>
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<Abstract><AbstractText>In terrestrial ecosystems, plant roots are colonized by various clades of mycorrhizal and endophytic fungi. Focused on the root systems of an oak-dominated temperate forest in Japan, we used 454 pyrosequencing to explore how phylogenetically diverse fungi constitute an ecological community of multiple ecotypes. In total, 345 operational taxonomic units (OTUs) of fungi were found from 159 terminal-root samples from 12 plant species occurring in the forest. Due to the dominance of an oak species (Quercus serrata), diverse ectomycorrhizal clades such as Russula, Lactarius, Cortinarius, Tomentella, Amanita, Boletus, and Cenococcum were observed. Unexpectedly, the root-associated fungal community was dominated by root-endophytic ascomycetes in Helotiales, Chaetothyriales, and Rhytismatales. Overall, 55.3% of root samples were colonized by both the commonly observed ascomycetes and ectomycorrhizal fungi; 75.0% of the root samples of the dominant Q. serrata were so cocolonized. Overall, this study revealed that root-associated fungal communities of oak-dominated temperate forests were dominated not only by ectomycorrhizal fungi but also by diverse root endophytes and that potential ecological interactions between the two ecotypes may be important to understand the complex assembly processes of belowground fungal communities.</AbstractText>
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<ReferenceList><Reference><Citation>Mol Biol Evol. 2000 Apr;17(4):540-52</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10742046</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Ecol Resour. 2011 Sep;11(5):914-21</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21592310</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Ecol. 2012 Nov;21(22):5599-612</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23062148</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Annu Rev Phytopathol. 2011;49:291-315</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19400639</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2012 Apr;194(2):536-47</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22269207</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Ecol. 2012 Sep;21(17):4160-70</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22568722</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2011 Jul;191(2):515-27</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21463329</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2012 May;194(3):614-28</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22489902</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2012;7(11):e49777</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23209598</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2011 May;190(3):783-93</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21244432</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2012;7(8):e42865</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22900058</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Evol Biol. 2004 Jun 28;4:18</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15222900</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2012;7(2):e32570</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22393417</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Integr Comp Biol. 2002 Apr;42(2):352-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21708728</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2011 Jul;191(2):314-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21557749</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2006;169(1):169-78</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16390428</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2012 Jan;193(2):465-73</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21988714</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Ecology. 2011 Jun;92(6):1332-43</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21797161</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2011 Aug 15;27(16):2194-200</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21700674</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycorrhiza. 2009 Nov;20(1):1-11</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19495811</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Microb Ecol. 2011 Aug;62(2):460-73</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21475991</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Phylogenet Evol. 2008 Jul;48(1):326-34</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18331802</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nature. 2001 Jun 14;411(6839):789-92</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11459055</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2012;7(7):e40863</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22808280</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Curr Biol. 2007 Feb 20;17(4):341-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17275300</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Ecol. 2010 Mar;19 Suppl 1:41-53</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20331769</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Bioinformatics. 2007 Feb 26;8:64</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17324286</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2005 Jan 20;33(2):511-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15661851</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycorrhiza. 2008 Feb;18(2):103-10</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18157555</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>FEMS Microbiol Ecol. 2011 Oct;78(1):103-15</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21457278</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Res. 2007 Mar;17(3):377-86</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17255551</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycol Res. 2005 Jan;109(Pt 1):7-20</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15736859</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycorrhiza. 2012 Feb;22(2):109-19</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21538095</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Brief Bioinform. 2012 Nov;13(6):656-68</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22772836</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2010 Jan;185(2):543-53</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19878460</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2009;182(2):314-30</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19236579</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Ecol. 2012 Apr;21(8):2004-16</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22168247</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2010 Jul;187(2):286-300</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20524992</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Environ Microbiol. 2009 Dec;11(12):3166-78</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19671076</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2010 Apr;186(2):281-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20409185</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Methods. 2008 Mar;5(3):235-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18264105</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Bioinformatics. 2009 Dec 15;10:421</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20003500</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Am J Bot. 2007 Oct;94(10):1630-41</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21636360</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2012 Jun;194(4):1070-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22471555</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2008;180(2):479-90</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18631297</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
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