Population genetics of the westernmost distribution of the glaciations-surviving black truffle Tuber melanosporum.
Identifieur interne : 001A45 ( Main/Corpus ); précédent : 001A44; suivant : 001A46Population genetics of the westernmost distribution of the glaciations-surviving black truffle Tuber melanosporum.
Auteurs : Iván García-Cunchillos ; Sergio Sánchez ; Juan José Barriuso ; Ernesto Pérez-CollazosSource :
- Mycorrhiza [ 1432-1890 ] ; 2014.
English descriptors
- KwdEn :
- MESH :
- chemical , chemistry : DNA, Fungal.
- geographic : Spain.
- genetics : Ascomycota, Mycorrhizae.
- Bayes Theorem, Gene Flow, Polymorphism, Genetic, Population Dynamics.
Abstract
The black truffle (Tuber melanosporum Vittad.) is an important natural resource due to its relevance as a delicacy in gastronomy. Different aspects of this hypogeous fungus species have been studied, including population genetics of French and Italian distribution ranges. Although those studies include some Spanish populations, this is the first time that the genetic diversity and genetic structure of the wide geographical range of the natural Spanish populations have been analysed. To achieve this goal, 23 natural populations were sampled across the Spanish geographical distribution. ISSR technique demonstrated its reliability and capability to detect high levels of polymorphism in the species. Studied populations showed high levels of genetic diversity (h N = 0.393, h S = 0.678, Hs = 0.418), indicating a non threatened genetic conservation status. These high levels may be a consequence of the wide distribution range of the species, of its spore dispersion by animals, and by its evolutionary history. AMOVA analysis showed a high degree of genetic structure among populations (47.89%) and other partitions as geographical ranges. Bayesian genetic structure analyses differentiated two main Spanish groups separated by the Iberian Mountain System, and showed the genetic uniqueness of some populations. Our results suggest the survival of some of these populations during the last glaciation, the Spanish southern distribution range perhaps surviving as had occurred in France and Italy, but it is also likely that specific northern areas may have acted as a refugia for the later dispersion to other calcareous areas in the Iberian Peninsula and probably France.
DOI: 10.1007/s00572-013-0540-9
PubMed: 24272144
Links to Exploration step
pubmed:24272144Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Population genetics of the westernmost distribution of the glaciations-surviving black truffle Tuber melanosporum.</title><author><name sortKey="Garcia Cunchillos, Ivan" sort="Garcia Cunchillos, Ivan" uniqKey="Garcia Cunchillos I" first="Iván" last="García-Cunchillos">Iván García-Cunchillos</name><affiliation><nlm:affiliation>Departamento de Ciencias Agrarias y del Medio Natural, Escuela Politécnica Superior de Huesca, Universidad de Zaragoza, C/ Carretera de Cuarte km 1 s/n, 22071, Huesca, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Sanchez, Sergio" sort="Sanchez, Sergio" uniqKey="Sanchez S" first="Sergio" last="Sánchez">Sergio Sánchez</name></author><author><name sortKey="Barriuso, Juan Jose" sort="Barriuso, Juan Jose" uniqKey="Barriuso J" first="Juan José" last="Barriuso">Juan José Barriuso</name></author><author><name sortKey="Perez Collazos, Ernesto" sort="Perez Collazos, Ernesto" uniqKey="Perez Collazos E" first="Ernesto" last="Pérez-Collazos">Ernesto Pérez-Collazos</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2014">2014</date><idno type="RBID">pubmed:24272144</idno><idno type="pmid">24272144</idno><idno type="doi">10.1007/s00572-013-0540-9</idno><idno type="wicri:Area/Main/Corpus">001A45</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001A45</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Population genetics of the westernmost distribution of the glaciations-surviving black truffle Tuber melanosporum.</title><author><name sortKey="Garcia Cunchillos, Ivan" sort="Garcia Cunchillos, Ivan" uniqKey="Garcia Cunchillos I" first="Iván" last="García-Cunchillos">Iván García-Cunchillos</name><affiliation><nlm:affiliation>Departamento de Ciencias Agrarias y del Medio Natural, Escuela Politécnica Superior de Huesca, Universidad de Zaragoza, C/ Carretera de Cuarte km 1 s/n, 22071, Huesca, Spain.</nlm:affiliation></affiliation></author><author><name sortKey="Sanchez, Sergio" sort="Sanchez, Sergio" uniqKey="Sanchez S" first="Sergio" last="Sánchez">Sergio Sánchez</name></author><author><name sortKey="Barriuso, Juan Jose" sort="Barriuso, Juan Jose" uniqKey="Barriuso J" first="Juan José" last="Barriuso">Juan José Barriuso</name></author><author><name sortKey="Perez Collazos, Ernesto" sort="Perez Collazos, Ernesto" uniqKey="Perez Collazos E" first="Ernesto" last="Pérez-Collazos">Ernesto Pérez-Collazos</name></author></analytic><series><title level="j">Mycorrhiza</title><idno type="eISSN">1432-1890</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Ascomycota (genetics)</term><term>Bayes Theorem (MeSH)</term><term>DNA, Fungal (chemistry)</term><term>Gene Flow (MeSH)</term><term>Mycorrhizae (genetics)</term><term>Polymorphism, Genetic (MeSH)</term><term>Population Dynamics (MeSH)</term><term>Spain (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA, Fungal</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Spain</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Ascomycota</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Bayes Theorem</term><term>Gene Flow</term><term>Polymorphism, Genetic</term><term>Population Dynamics</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The black truffle (Tuber melanosporum Vittad.) is an important natural resource due to its relevance as a delicacy in gastronomy. Different aspects of this hypogeous fungus species have been studied, including population genetics of French and Italian distribution ranges. Although those studies include some Spanish populations, this is the first time that the genetic diversity and genetic structure of the wide geographical range of the natural Spanish populations have been analysed. To achieve this goal, 23 natural populations were sampled across the Spanish geographical distribution. ISSR technique demonstrated its reliability and capability to detect high levels of polymorphism in the species. Studied populations showed high levels of genetic diversity (h N = 0.393, h S = 0.678, Hs = 0.418), indicating a non threatened genetic conservation status. These high levels may be a consequence of the wide distribution range of the species, of its spore dispersion by animals, and by its evolutionary history. AMOVA analysis showed a high degree of genetic structure among populations (47.89%) and other partitions as geographical ranges. Bayesian genetic structure analyses differentiated two main Spanish groups separated by the Iberian Mountain System, and showed the genetic uniqueness of some populations. Our results suggest the survival of some of these populations during the last glaciation, the Spanish southern distribution range perhaps surviving as had occurred in France and Italy, but it is also likely that specific northern areas may have acted as a refugia for the later dispersion to other calcareous areas in the Iberian Peninsula and probably France.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24272144</PMID><DateCompleted><Year>2014</Year><Month>11</Month><Day>21</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-1890</ISSN><JournalIssue CitedMedium="Internet"><Volume>24 Suppl 1</Volume><PubDate><Year>2014</Year><Month>Apr</Month></PubDate></JournalIssue><Title>Mycorrhiza</Title><ISOAbbreviation>Mycorrhiza</ISOAbbreviation></Journal><ArticleTitle>Population genetics of the westernmost distribution of the glaciations-surviving black truffle Tuber melanosporum.</ArticleTitle><Pagination><MedlinePgn>S89-100</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00572-013-0540-9</ELocationID><Abstract><AbstractText>The black truffle (Tuber melanosporum Vittad.) is an important natural resource due to its relevance as a delicacy in gastronomy. Different aspects of this hypogeous fungus species have been studied, including population genetics of French and Italian distribution ranges. Although those studies include some Spanish populations, this is the first time that the genetic diversity and genetic structure of the wide geographical range of the natural Spanish populations have been analysed. To achieve this goal, 23 natural populations were sampled across the Spanish geographical distribution. ISSR technique demonstrated its reliability and capability to detect high levels of polymorphism in the species. Studied populations showed high levels of genetic diversity (h N = 0.393, h S = 0.678, Hs = 0.418), indicating a non threatened genetic conservation status. These high levels may be a consequence of the wide distribution range of the species, of its spore dispersion by animals, and by its evolutionary history. AMOVA analysis showed a high degree of genetic structure among populations (47.89%) and other partitions as geographical ranges. Bayesian genetic structure analyses differentiated two main Spanish groups separated by the Iberian Mountain System, and showed the genetic uniqueness of some populations. Our results suggest the survival of some of these populations during the last glaciation, the Spanish southern distribution range perhaps surviving as had occurred in France and Italy, but it is also likely that specific northern areas may have acted as a refugia for the later dispersion to other calcareous areas in the Iberian Peninsula and probably France.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>García-Cunchillos</LastName><ForeName>Iván</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Departamento de Ciencias Agrarias y del Medio Natural, Escuela Politécnica Superior de Huesca, Universidad de Zaragoza, C/ Carretera de Cuarte km 1 s/n, 22071, Huesca, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sánchez</LastName><ForeName>Sergio</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Barriuso</LastName><ForeName>Juan José</ForeName><Initials>JJ</Initials></Author><Author ValidYN="Y"><LastName>Pérez-Collazos</LastName><ForeName>Ernesto</ForeName><Initials>E</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2013</Year><Month>11</Month><Day>23</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Mycorrhiza</MedlineTA><NlmUniqueID>100955036</NlmUniqueID><ISSNLinking>0940-6360</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001203" MajorTopicYN="N">Ascomycota</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001499" MajorTopicYN="N">Bayes Theorem</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D051456" MajorTopicYN="N">Gene Flow</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011110" MajorTopicYN="N">Polymorphism, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011157" MajorTopicYN="N">Population Dynamics</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013030" MajorTopicYN="N" Type="Geographic">Spain</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year><Month>06</Month><Day>06</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2013</Year><Month>10</Month><Day>29</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2013</Year><Month>11</Month><Day>26</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2013</Year><Month>11</Month><Day>26</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2014</Year><Month>12</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">24272144</ArticleId><ArticleId IdType="doi">10.1007/s00572-013-0540-9</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Appl Environ Microbiol. 2012 Sep;78(18):6534-9</Citation><ArticleIdList><ArticleId IdType="pubmed">22773652</ArticleId></ArticleIdList></Reference><Reference><Citation>Fungal Genet Biol. 2011 Jun;48(6):592-601</Citation><ArticleIdList><ArticleId IdType="pubmed">20965267</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1995 Jan;139(1):457-62</Citation><ArticleIdList><ArticleId IdType="pubmed">7705646</ArticleId></ArticleIdList></Reference><Reference><Citation>Food Microbiol. 2010 Apr;27(2):286-93</Citation><ArticleIdList><ArticleId IdType="pubmed">20141948</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 1998 Apr;7(4):453-64</Citation><ArticleIdList><ArticleId IdType="pubmed">9628000</ArticleId></ArticleIdList></Reference><Reference><Citation>Cancer Res. 1967 Feb;27(2):209-20</Citation><ArticleIdList><ArticleId IdType="pubmed">6018555</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2012 May;194(3):823-35</Citation><ArticleIdList><ArticleId IdType="pubmed">22394027</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 1987 Jul;4(4):406-25</Citation><ArticleIdList><ArticleId IdType="pubmed">3447015</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 2000 Jun;155(2):945-59</Citation><ArticleIdList><ArticleId IdType="pubmed">10835412</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 1987 May 15;236(4803):787-92</Citation><ArticleIdList><ArticleId IdType="pubmed">3576198</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 2004 May;13(5):1143-55</Citation><ArticleIdList><ArticleId IdType="pubmed">15078452</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 1999 Dec;8(12):2061-9</Citation><ArticleIdList><ArticleId IdType="pubmed">10632857</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 2002 Jul;11(7):1157-64</Citation><ArticleIdList><ArticleId IdType="pubmed">12074723</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2008;180(2):466-78</Citation><ArticleIdList><ArticleId IdType="pubmed">18643942</ArticleId></ArticleIdList></Reference><Reference><Citation>Fungal Biol. 2012 Feb;116(2):261-75</Citation><ArticleIdList><ArticleId IdType="pubmed">22289772</ArticleId></ArticleIdList></Reference><Reference><Citation>Mycopathologia. 2011 May;171(5):361-71</Citation><ArticleIdList><ArticleId IdType="pubmed">20835913</ArticleId></ArticleIdList></Reference><Reference><Citation>FEMS Microbiol Lett. 1997 Aug 15;153(2):255-60</Citation><ArticleIdList><ArticleId IdType="pubmed">9271850</ArticleId></ArticleIdList></Reference><Reference><Citation>Mycorrhiza. 2007 Jul;17(5):405-14</Citation><ArticleIdList><ArticleId IdType="pubmed">17318596</ArticleId></ArticleIdList></Reference><Reference><Citation>Fungal Genet Biol. 2011 Jun;48(6):585-91</Citation><ArticleIdList><ArticleId IdType="pubmed">20884368</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol Resour. 2009 Sep;9(5):1322-32</Citation><ArticleIdList><ArticleId IdType="pubmed">21564903</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2013 Jul;199(1):176-87</Citation><ArticleIdList><ArticleId IdType="pubmed">23574460</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2005 Nov;71(11):6584-9</Citation><ArticleIdList><ArticleId IdType="pubmed">16269685</ArticleId></ArticleIdList></Reference><Reference><Citation>Fungal Biol. 2010 Nov-Dec;114(11-12):936-42</Citation><ArticleIdList><ArticleId IdType="pubmed">21036337</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 1998 Sep;7(9):1107-25</Citation><ArticleIdList><ArticleId IdType="pubmed">9734070</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 1979 Oct;76(10):5269-73</Citation><ArticleIdList><ArticleId IdType="pubmed">291943</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Microbiol. 2011 Sep 16;11:203</Citation><ArticleIdList><ArticleId IdType="pubmed">21923908</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 2005 Jul;14(8):2611-20</Citation><ArticleIdList><ArticleId IdType="pubmed">15969739</ArticleId></ArticleIdList></Reference><Reference><Citation>Mycorrhiza. 2013 Feb;23(2):99-106</Citation><ArticleIdList><ArticleId IdType="pubmed">22772310</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 1973 Dec;70(12):3321-3</Citation><ArticleIdList><ArticleId IdType="pubmed">4519626</ArticleId></ArticleIdList></Reference><Reference><Citation>Heredity (Edinb). 2001 Apr;86(Pt 4):451-8</Citation><ArticleIdList><ArticleId IdType="pubmed">11520345</ArticleId></ArticleIdList></Reference><Reference><Citation>Evol Bioinform Online. 2007 Feb 23;1:47-50</Citation><ArticleIdList><ArticleId IdType="pubmed">19325852</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 2001 Feb;10(2):357-70</Citation><ArticleIdList><ArticleId IdType="pubmed">11298951</ArticleId></ArticleIdList></Reference><Reference><Citation>Ann Bot. 2006 Apr;97(4):635-47</Citation><ArticleIdList><ArticleId IdType="pubmed">16495317</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2010 Apr 15;464(7291):1033-8</Citation><ArticleIdList><ArticleId IdType="pubmed">20348908</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2011 Feb;189(3):723-35</Citation><ArticleIdList><ArticleId IdType="pubmed">20964691</ArticleId></ArticleIdList></Reference><Reference><Citation>Genomics. 1994 Mar 15;20(2):176-83</Citation><ArticleIdList><ArticleId IdType="pubmed">8020964</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2007 Aug;24(8):1596-9</Citation><ArticleIdList><ArticleId IdType="pubmed">17488738</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2013;8(1):e52765</Citation><ArticleIdList><ArticleId IdType="pubmed">23300990</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2000 Nov;66(11):5035-42</Citation><ArticleIdList><ArticleId IdType="pubmed">11055961</ArticleId></ArticleIdList></Reference><Reference><Citation>FEMS Microbiol Lett. 2006 Jan;254(2):251-7</Citation><ArticleIdList><ArticleId IdType="pubmed">16445753</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/MycorrhizaeV1/Data/Main/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001A45 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd -nk 001A45 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= MycorrhizaeV1
|flux= Main
|étape= Corpus
|type= RBID
|clé= pubmed:24272144
|texte= Population genetics of the westernmost distribution of the glaciations-surviving black truffle Tuber melanosporum.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Corpus/RBID.i -Sk "pubmed:24272144" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd \
| NlmPubMed2Wicri -a MycorrhizaeV1
| This area was generated with Dilib version V0.6.37. |  |