Root-associated fungi of Rosa rugosa grown on the frontal dunes of the Baltic Sea Coast in Lithuania.
Identifieur interne : 001984 ( Main/Corpus ); précédent : 001983; suivant : 001985Root-associated fungi of Rosa rugosa grown on the frontal dunes of the Baltic Sea Coast in Lithuania.
Auteurs : Audrius Menkis ; Katarina Ihrmark ; Jan Stenlid ; Rimvydas VasaitisSource :
- Microbial ecology [ 1432-184X ] ; 2014.
English descriptors
- KwdEn :
- Biodiversity (MeSH), DNA, Ribosomal Spacer (genetics), Endophytes (physiology), Environment (MeSH), Fungi (physiology), Lithuania (MeSH), Molecular Sequence Data (MeSH), Mycorrhizae (physiology), Plant Roots (microbiology), Plant Roots (physiology), RNA, Fungal (genetics), Rosa (microbiology), Rosa (physiology), Sequence Analysis, DNA (MeSH).
- MESH :
- chemical , genetics : DNA, Ribosomal Spacer, RNA, Fungal.
- geographic : Lithuania.
- microbiology : Plant Roots, Rosa.
- physiology : Endophytes, Fungi, Mycorrhizae, Plant Roots, Rosa.
- Biodiversity, Environment, Molecular Sequence Data, Sequence Analysis, DNA.
Abstract
The aim of the present study was to assess fungal communities associated with fine living roots of Rosa rugosa Thunb grown on the frontal dunes of Curonian Spit at the Baltic Sea coast in Lithuania. The roots of R. rugosa were sampled at five sites (Nida, Preila, Pervalka, Juodkrante and Smiltyne) situated at a distance ca. 5-15 km from each other. Direct amplification, cloning and sequencing of fungal ITS rRNA from the fine roots resulted in 134 high-quality sequences, representing 31 fungal taxa among which saprotrophs and endophytes Mycena sp. (14.2 %), Tumularia sp. (14.2 %), Penicillium spinulosum (11.9 %) and Cadophora malorum (9.0 %) were most common. Arbuscular mycorrhizal fungi including Entrophospora baltica (0.7 %) and Rhizophagus irregularis (0.7 %) and potentially root pathogenic fungi--Ceratobasidium sp. (4.5 %), Fusarium oxysporum (3.0 %), Fusarium culmorum (0.7 %) and Ilyonectria crassa (0.7 %)--were also detected at low proportions. In conclusion, the results demonstrated that the fine roots of R. rugosa are inhabited by various groups of fungi. Although saprotrophs and endophytes were dominant, the detection of arbuscular mycorrhizal fungi indicated that these may be important for mineral nutrition of R. rugosa established on dry and poor fertility coastal dunes.
DOI: 10.1007/s00248-013-0351-8
PubMed: 24402365
Links to Exploration step
pubmed:24402365Le document en format XML
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Box 7026, SE-750 07, Uppsala, Sweden, Audrius.Menkis@slu.se.</nlm:affiliation></affiliation></author><author><name sortKey="Ihrmark, Katarina" sort="Ihrmark, Katarina" uniqKey="Ihrmark K" first="Katarina" last="Ihrmark">Katarina Ihrmark</name></author><author><name sortKey="Stenlid, Jan" sort="Stenlid, Jan" uniqKey="Stenlid J" first="Jan" last="Stenlid">Jan Stenlid</name></author><author><name sortKey="Vasaitis, Rimvydas" sort="Vasaitis, Rimvydas" uniqKey="Vasaitis R" first="Rimvydas" last="Vasaitis">Rimvydas Vasaitis</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2014">2014</date><idno type="RBID">pubmed:24402365</idno><idno type="pmid">24402365</idno><idno type="doi">10.1007/s00248-013-0351-8</idno><idno type="wicri:Area/Main/Corpus">001984</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001984</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Root-associated fungi of Rosa rugosa grown on the frontal dunes of the Baltic Sea Coast in Lithuania.</title><author><name sortKey="Menkis, Audrius" sort="Menkis, Audrius" uniqKey="Menkis A" first="Audrius" last="Menkis">Audrius Menkis</name><affiliation><nlm:affiliation>Department of Forest Mycology and Plant Pathology, Uppsala BioCenter, Swedish University of Agricultural Sciences, P.O. Box 7026, SE-750 07, Uppsala, Sweden, Audrius.Menkis@slu.se.</nlm:affiliation></affiliation></author><author><name sortKey="Ihrmark, Katarina" sort="Ihrmark, Katarina" uniqKey="Ihrmark K" first="Katarina" last="Ihrmark">Katarina Ihrmark</name></author><author><name sortKey="Stenlid, Jan" sort="Stenlid, Jan" uniqKey="Stenlid J" first="Jan" last="Stenlid">Jan Stenlid</name></author><author><name sortKey="Vasaitis, Rimvydas" sort="Vasaitis, Rimvydas" uniqKey="Vasaitis R" first="Rimvydas" last="Vasaitis">Rimvydas Vasaitis</name></author></analytic><series><title level="j">Microbial ecology</title><idno type="eISSN">1432-184X</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Biodiversity (MeSH)</term><term>DNA, Ribosomal Spacer (genetics)</term><term>Endophytes (physiology)</term><term>Environment (MeSH)</term><term>Fungi (physiology)</term><term>Lithuania (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Mycorrhizae (physiology)</term><term>Plant Roots (microbiology)</term><term>Plant Roots (physiology)</term><term>RNA, Fungal (genetics)</term><term>Rosa (microbiology)</term><term>Rosa (physiology)</term><term>Sequence Analysis, DNA (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Ribosomal Spacer</term><term>RNA, Fungal</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Lithuania</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Roots</term><term>Rosa</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Endophytes</term><term>Fungi</term><term>Mycorrhizae</term><term>Plant Roots</term><term>Rosa</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biodiversity</term><term>Environment</term><term>Molecular Sequence Data</term><term>Sequence Analysis, DNA</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The aim of the present study was to assess fungal communities associated with fine living roots of Rosa rugosa Thunb grown on the frontal dunes of Curonian Spit at the Baltic Sea coast in Lithuania. The roots of R. rugosa were sampled at five sites (Nida, Preila, Pervalka, Juodkrante and Smiltyne) situated at a distance ca. 5-15 km from each other. Direct amplification, cloning and sequencing of fungal ITS rRNA from the fine roots resulted in 134 high-quality sequences, representing 31 fungal taxa among which saprotrophs and endophytes Mycena sp. (14.2 %), Tumularia sp. (14.2 %), Penicillium spinulosum (11.9 %) and Cadophora malorum (9.0 %) were most common. Arbuscular mycorrhizal fungi including Entrophospora baltica (0.7 %) and Rhizophagus irregularis (0.7 %) and potentially root pathogenic fungi--Ceratobasidium sp. (4.5 %), Fusarium oxysporum (3.0 %), Fusarium culmorum (0.7 %) and Ilyonectria crassa (0.7 %)--were also detected at low proportions. In conclusion, the results demonstrated that the fine roots of R. rugosa are inhabited by various groups of fungi. Although saprotrophs and endophytes were dominant, the detection of arbuscular mycorrhizal fungi indicated that these may be important for mineral nutrition of R. rugosa established on dry and poor fertility coastal dunes.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24402365</PMID><DateCompleted><Year>2014</Year><Month>12</Month><Day>19</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-184X</ISSN><JournalIssue CitedMedium="Internet"><Volume>67</Volume><Issue>4</Issue><PubDate><Year>2014</Year><Month>May</Month></PubDate></JournalIssue><Title>Microbial ecology</Title><ISOAbbreviation>Microb Ecol</ISOAbbreviation></Journal><ArticleTitle>Root-associated fungi of Rosa rugosa grown on the frontal dunes of the Baltic Sea Coast in Lithuania.</ArticleTitle><Pagination><MedlinePgn>769-74</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00248-013-0351-8</ELocationID><Abstract><AbstractText>The aim of the present study was to assess fungal communities associated with fine living roots of Rosa rugosa Thunb grown on the frontal dunes of Curonian Spit at the Baltic Sea coast in Lithuania. The roots of R. rugosa were sampled at five sites (Nida, Preila, Pervalka, Juodkrante and Smiltyne) situated at a distance ca. 5-15 km from each other. Direct amplification, cloning and sequencing of fungal ITS rRNA from the fine roots resulted in 134 high-quality sequences, representing 31 fungal taxa among which saprotrophs and endophytes Mycena sp. (14.2 %), Tumularia sp. (14.2 %), Penicillium spinulosum (11.9 %) and Cadophora malorum (9.0 %) were most common. Arbuscular mycorrhizal fungi including Entrophospora baltica (0.7 %) and Rhizophagus irregularis (0.7 %) and potentially root pathogenic fungi--Ceratobasidium sp. (4.5 %), Fusarium oxysporum (3.0 %), Fusarium culmorum (0.7 %) and Ilyonectria crassa (0.7 %)--were also detected at low proportions. In conclusion, the results demonstrated that the fine roots of R. rugosa are inhabited by various groups of fungi. 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