The mid-domain effect in ectomycorrhizal fungi: range overlap along an elevation gradient on Mount Fuji, Japan.
Identifieur interne : 001923 ( Main/Corpus ); précédent : 001922; suivant : 001924The mid-domain effect in ectomycorrhizal fungi: range overlap along an elevation gradient on Mount Fuji, Japan.
Auteurs : Yumiko Miyamoto ; Takashi Nakano ; Masahira Hattori ; Kazuhide NaraSource :
- The ISME journal [ 1751-7370 ] ; 2014.
English descriptors
- KwdEn :
- MESH :
- classification : Mycorrhizae.
- isolation & purification : Mycorrhizae.
- Altitude, Biodiversity, Japan, Soil Microbiology.
Abstract
Mid-domain effect (MDE) models predict that the random placement of species' ranges within a bounded geographical area leads to increased range overlap and species richness in the center of the bounded area. These models are frequently applied to study species-richness patterns of macroorganisms, but the MDE in relation to microorganisms is poorly understood. In this study, we examined the characteristics of the MDE in richness patterns of ectomycorrhizal (EM) fungi, an ecologically important group of soil symbionts. We conducted intensive soil sampling to investigate overlap among species ranges and the applicability of the MDE to EM fungi in four temperate forest stands along an elevation gradient on Mount Fuji, Japan. Molecular analyses using direct sequencing revealed 302 EM fungal species. Of 73 EM fungal species found in multiple stands, 72 inhabited a continuous range along the elevation gradient. The maximum overlap in species range and the highest species richness occurred at elevations in the middle of the gradient. The observed richness pattern also fit within the 95% confidence interval of the mid-domain null model, supporting the role of the MDE in EM fungal richness. Deviation in observed richness from the mean of the mid-domain null estimation was negatively correlated with some environmental factors, including precipitation and soil C/N, indicating that unexplained richness patterns could be driven by these environmental factors. Our results clearly support the existence of microbial species' ranges along environmental gradients and the potential applicability of the MDE to better understand microbial diversity patterns.
DOI: 10.1038/ismej.2014.34
PubMed: 24621523
PubMed Central: PMC4817612
Links to Exploration step
pubmed:24621523Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The mid-domain effect in ectomycorrhizal fungi: range overlap along an elevation gradient on Mount Fuji, Japan.</title><author><name sortKey="Miyamoto, Yumiko" sort="Miyamoto, Yumiko" uniqKey="Miyamoto Y" first="Yumiko" last="Miyamoto">Yumiko Miyamoto</name><affiliation><nlm:affiliation>Department of Natural Environmental Studies, The University of Tokyo, Kashiwa, Chiba, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Nakano, Takashi" sort="Nakano, Takashi" uniqKey="Nakano T" first="Takashi" last="Nakano">Takashi Nakano</name><affiliation><nlm:affiliation>Yamanashi Institute of Environmental Sciences, Fujiyoshida, Yamanashi, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Hattori, Masahira" sort="Hattori, Masahira" uniqKey="Hattori M" first="Masahira" last="Hattori">Masahira Hattori</name><affiliation><nlm:affiliation>Center for Omics and Bioinformatics, The University of Tokyo, Kashiwa, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Nara, Kazuhide" sort="Nara, Kazuhide" uniqKey="Nara K" first="Kazuhide" last="Nara">Kazuhide Nara</name><affiliation><nlm:affiliation>Department of Natural Environmental Studies, The University of Tokyo, Kashiwa, Chiba, Japan.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2014">2014</date><idno type="RBID">pubmed:24621523</idno><idno type="pmid">24621523</idno><idno type="doi">10.1038/ismej.2014.34</idno><idno type="pmc">PMC4817612</idno><idno type="wicri:Area/Main/Corpus">001923</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001923</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">The mid-domain effect in ectomycorrhizal fungi: range overlap along an elevation gradient on Mount Fuji, Japan.</title><author><name sortKey="Miyamoto, Yumiko" sort="Miyamoto, Yumiko" uniqKey="Miyamoto Y" first="Yumiko" last="Miyamoto">Yumiko Miyamoto</name><affiliation><nlm:affiliation>Department of Natural Environmental Studies, The University of Tokyo, Kashiwa, Chiba, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Nakano, Takashi" sort="Nakano, Takashi" uniqKey="Nakano T" first="Takashi" last="Nakano">Takashi Nakano</name><affiliation><nlm:affiliation>Yamanashi Institute of Environmental Sciences, Fujiyoshida, Yamanashi, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Hattori, Masahira" sort="Hattori, Masahira" uniqKey="Hattori M" first="Masahira" last="Hattori">Masahira Hattori</name><affiliation><nlm:affiliation>Center for Omics and Bioinformatics, The University of Tokyo, Kashiwa, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Nara, Kazuhide" sort="Nara, Kazuhide" uniqKey="Nara K" first="Kazuhide" last="Nara">Kazuhide Nara</name><affiliation><nlm:affiliation>Department of Natural Environmental Studies, The University of Tokyo, Kashiwa, Chiba, Japan.</nlm:affiliation></affiliation></author></analytic><series><title level="j">The ISME journal</title><idno type="eISSN">1751-7370</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Altitude (MeSH)</term><term>Biodiversity (MeSH)</term><term>Japan (MeSH)</term><term>Mycorrhizae (classification)</term><term>Mycorrhizae (isolation & purification)</term><term>Soil Microbiology (MeSH)</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Altitude</term><term>Biodiversity</term><term>Japan</term><term>Soil Microbiology</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Mid-domain effect (MDE) models predict that the random placement of species' ranges within a bounded geographical area leads to increased range overlap and species richness in the center of the bounded area. These models are frequently applied to study species-richness patterns of macroorganisms, but the MDE in relation to microorganisms is poorly understood. In this study, we examined the characteristics of the MDE in richness patterns of ectomycorrhizal (EM) fungi, an ecologically important group of soil symbionts. We conducted intensive soil sampling to investigate overlap among species ranges and the applicability of the MDE to EM fungi in four temperate forest stands along an elevation gradient on Mount Fuji, Japan. Molecular analyses using direct sequencing revealed 302 EM fungal species. Of 73 EM fungal species found in multiple stands, 72 inhabited a continuous range along the elevation gradient. The maximum overlap in species range and the highest species richness occurred at elevations in the middle of the gradient. The observed richness pattern also fit within the 95% confidence interval of the mid-domain null model, supporting the role of the MDE in EM fungal richness. Deviation in observed richness from the mean of the mid-domain null estimation was negatively correlated with some environmental factors, including precipitation and soil C/N, indicating that unexplained richness patterns could be driven by these environmental factors. Our results clearly support the existence of microbial species' ranges along environmental gradients and the potential applicability of the MDE to better understand microbial diversity patterns. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">24621523</PMID><DateCompleted><Year>2014</Year><Month>12</Month><Day>03</Day></DateCompleted><DateRevised><Year>2019</Year><Month>01</Month><Day>10</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1751-7370</ISSN><JournalIssue CitedMedium="Internet"><Volume>8</Volume><Issue>8</Issue><PubDate><Year>2014</Year><Month>Aug</Month></PubDate></JournalIssue><Title>The ISME journal</Title><ISOAbbreviation>ISME J</ISOAbbreviation></Journal><ArticleTitle>The mid-domain effect in ectomycorrhizal fungi: range overlap along an elevation gradient on Mount Fuji, Japan.</ArticleTitle><Pagination><MedlinePgn>1739-46</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/ismej.2014.34</ELocationID><Abstract><AbstractText>Mid-domain effect (MDE) models predict that the random placement of species' ranges within a bounded geographical area leads to increased range overlap and species richness in the center of the bounded area. These models are frequently applied to study species-richness patterns of macroorganisms, but the MDE in relation to microorganisms is poorly understood. In this study, we examined the characteristics of the MDE in richness patterns of ectomycorrhizal (EM) fungi, an ecologically important group of soil symbionts. We conducted intensive soil sampling to investigate overlap among species ranges and the applicability of the MDE to EM fungi in four temperate forest stands along an elevation gradient on Mount Fuji, Japan. Molecular analyses using direct sequencing revealed 302 EM fungal species. Of 73 EM fungal species found in multiple stands, 72 inhabited a continuous range along the elevation gradient. The maximum overlap in species range and the highest species richness occurred at elevations in the middle of the gradient. The observed richness pattern also fit within the 95% confidence interval of the mid-domain null model, supporting the role of the MDE in EM fungal richness. Deviation in observed richness from the mean of the mid-domain null estimation was negatively correlated with some environmental factors, including precipitation and soil C/N, indicating that unexplained richness patterns could be driven by these environmental factors. Our results clearly support the existence of microbial species' ranges along environmental gradients and the potential applicability of the MDE to better understand microbial diversity patterns. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Miyamoto</LastName><ForeName>Yumiko</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Department of Natural Environmental Studies, The University of Tokyo, Kashiwa, Chiba, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nakano</LastName><ForeName>Takashi</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Yamanashi Institute of Environmental Sciences, Fujiyoshida, Yamanashi, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hattori</LastName><ForeName>Masahira</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Center for Omics and Bioinformatics, The University of Tokyo, Kashiwa, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nara</LastName><ForeName>Kazuhide</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Department of Natural Environmental Studies, The University of Tokyo, Kashiwa, Chiba, Japan.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>03</Month><Day>13</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>ISME J</MedlineTA><NlmUniqueID>101301086</NlmUniqueID><ISSNLinking>1751-7362</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000531" MajorTopicYN="Y">Altitude</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D044822" 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