The mid-domain effect in ectomycorrhizal fungi: range overlap along an elevation gradient on Mount Fuji, Japan.
Identifieur interne : 001923 ( Main/Corpus ); précédent : 001922; suivant : 001924The mid-domain effect in ectomycorrhizal fungi: range overlap along an elevation gradient on Mount Fuji, Japan.
Auteurs : Yumiko Miyamoto ; Takashi Nakano ; Masahira Hattori ; Kazuhide NaraSource :
- The ISME journal [ 1751-7370 ] ; 2014.
English descriptors
- KwdEn :
- MESH :
- classification : Mycorrhizae.
- isolation & purification : Mycorrhizae.
- Altitude, Biodiversity, Japan, Soil Microbiology.
Abstract
Mid-domain effect (MDE) models predict that the random placement of species' ranges within a bounded geographical area leads to increased range overlap and species richness in the center of the bounded area. These models are frequently applied to study species-richness patterns of macroorganisms, but the MDE in relation to microorganisms is poorly understood. In this study, we examined the characteristics of the MDE in richness patterns of ectomycorrhizal (EM) fungi, an ecologically important group of soil symbionts. We conducted intensive soil sampling to investigate overlap among species ranges and the applicability of the MDE to EM fungi in four temperate forest stands along an elevation gradient on Mount Fuji, Japan. Molecular analyses using direct sequencing revealed 302 EM fungal species. Of 73 EM fungal species found in multiple stands, 72 inhabited a continuous range along the elevation gradient. The maximum overlap in species range and the highest species richness occurred at elevations in the middle of the gradient. The observed richness pattern also fit within the 95% confidence interval of the mid-domain null model, supporting the role of the MDE in EM fungal richness. Deviation in observed richness from the mean of the mid-domain null estimation was negatively correlated with some environmental factors, including precipitation and soil C/N, indicating that unexplained richness patterns could be driven by these environmental factors. Our results clearly support the existence of microbial species' ranges along environmental gradients and the potential applicability of the MDE to better understand microbial diversity patterns.
DOI: 10.1038/ismej.2014.34
PubMed: 24621523
PubMed Central: PMC4817612
Links to Exploration step
pubmed:24621523Le document en format XML
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<author><name sortKey="Nakano, Takashi" sort="Nakano, Takashi" uniqKey="Nakano T" first="Takashi" last="Nakano">Takashi Nakano</name>
<affiliation><nlm:affiliation>Yamanashi Institute of Environmental Sciences, Fujiyoshida, Yamanashi, Japan.</nlm:affiliation>
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<author><name sortKey="Hattori, Masahira" sort="Hattori, Masahira" uniqKey="Hattori M" first="Masahira" last="Hattori">Masahira Hattori</name>
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<front><div type="abstract" xml:lang="en">Mid-domain effect (MDE) models predict that the random placement of species' ranges within a bounded geographical area leads to increased range overlap and species richness in the center of the bounded area. These models are frequently applied to study species-richness patterns of macroorganisms, but the MDE in relation to microorganisms is poorly understood. In this study, we examined the characteristics of the MDE in richness patterns of ectomycorrhizal (EM) fungi, an ecologically important group of soil symbionts. We conducted intensive soil sampling to investigate overlap among species ranges and the applicability of the MDE to EM fungi in four temperate forest stands along an elevation gradient on Mount Fuji, Japan. Molecular analyses using direct sequencing revealed 302 EM fungal species. Of 73 EM fungal species found in multiple stands, 72 inhabited a continuous range along the elevation gradient. The maximum overlap in species range and the highest species richness occurred at elevations in the middle of the gradient. The observed richness pattern also fit within the 95% confidence interval of the mid-domain null model, supporting the role of the MDE in EM fungal richness. Deviation in observed richness from the mean of the mid-domain null estimation was negatively correlated with some environmental factors, including precipitation and soil C/N, indicating that unexplained richness patterns could be driven by these environmental factors. Our results clearly support the existence of microbial species' ranges along environmental gradients and the potential applicability of the MDE to better understand microbial diversity patterns. </div>
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<Abstract><AbstractText>Mid-domain effect (MDE) models predict that the random placement of species' ranges within a bounded geographical area leads to increased range overlap and species richness in the center of the bounded area. These models are frequently applied to study species-richness patterns of macroorganisms, but the MDE in relation to microorganisms is poorly understood. In this study, we examined the characteristics of the MDE in richness patterns of ectomycorrhizal (EM) fungi, an ecologically important group of soil symbionts. We conducted intensive soil sampling to investigate overlap among species ranges and the applicability of the MDE to EM fungi in four temperate forest stands along an elevation gradient on Mount Fuji, Japan. Molecular analyses using direct sequencing revealed 302 EM fungal species. Of 73 EM fungal species found in multiple stands, 72 inhabited a continuous range along the elevation gradient. The maximum overlap in species range and the highest species richness occurred at elevations in the middle of the gradient. The observed richness pattern also fit within the 95% confidence interval of the mid-domain null model, supporting the role of the MDE in EM fungal richness. Deviation in observed richness from the mean of the mid-domain null estimation was negatively correlated with some environmental factors, including precipitation and soil C/N, indicating that unexplained richness patterns could be driven by these environmental factors. Our results clearly support the existence of microbial species' ranges along environmental gradients and the potential applicability of the MDE to better understand microbial diversity patterns. </AbstractText>
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<ReferenceList><Reference><Citation>Trends Ecol Evol. 2000 Feb;15(2):70-76</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10652559</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nature. 2000 May 11;405(6783):220-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10821282</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Ecol. 2001 Aug;10(8):1855-71</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11555231</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Am Nat. 2004 Feb;163(2):192-211</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14970922</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Am Nat. 2004 Mar;163(3):E1-23</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15026983</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2005 Apr;166(1):263-71</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15760369</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2005 May;166(2):619-29</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15819924</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2006;169(1):169-78</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16390428</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Ecology. 2006 Mar;87(3):563-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16602286</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Ecology. 2006 Apr;87(4):816-22</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16676524</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2007;174(2):250-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17388888</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2007;174(2):430-40</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17388905</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2007;176(2):437-47</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17888121</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2008;178(1):167-76</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18194145</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2008;180(2):479-90</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18631297</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2009;182(2):295-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19302178</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Mol Biol. 1991 Nov;17(5):1105-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">1932684</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Ecol Lett. 2009 Jun;12(6):550-60</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19389141</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>FEMS Microbiol Ecol. 2004 Aug 1;49(2):319-32</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19712424</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2010 Jan;185(2):529-42</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19878464</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycorrhiza. 2010 Apr;20(4):217-63</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20191371</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Ecol Lett. 2010 Sep;13(9):1103-13</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20545731</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycorrhiza. 2012 Feb;22(2):121-34</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21573837</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Ecol. 2011 Jul;20(14):3071-80</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21645161</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2012 Jan;193(2):465-73</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21988714</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>ISME J. 2012 Apr;6(4):745-55</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22134645</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Ecol. 2012 Sep;21(17):4160-70</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22568722</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycorrhiza. 2013 Jan;23(1):11-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22592855</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Ecol. 2012 Oct;21(20):5110-23</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22971047</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mycorrhiza. 2013 Nov;23(8):641-53</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23702643</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Oecologia. 2001 Oct;129(2):271-280</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28547606</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
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