Where the wild things are: looking for uncultured Glomeromycota.
Identifieur interne : 001823 ( Main/Corpus ); précédent : 001822; suivant : 001824Where the wild things are: looking for uncultured Glomeromycota.
Auteurs : Brian M. Ohsowski ; P Dylan Zaitsoff ; Maarja Opik ; Miranda M. HartSource :
- The New phytologist [ 1469-8137 ] ; 2014.
English descriptors
- KwdEn :
- MESH :
- genetics : Glomeromycota, Mycorrhizae.
- microbiology : Crops, Agricultural.
- Ecosystem, Forests, Grassland, Humans.
Abstract
Our knowledge of Glomeromycotan fungi rests largely on studies of cultured isolates. However, these isolates probably comprise one life-history strategy - ruderal. Consequently, our knowledge of arbuscular mycorrhizal (AM) fungi may be biased towards fungi that occur primarily in disturbed habitats and associate with disturbance-tolerant host plants. We can expect to see a signal for this in DNA-based community surveys: human-impacted habitats and cultivated plants should yield a higher proportion of AM fungal species that have been cultured compared with natural habitats and wild plants. Using the MaarjAM database (a curated open-access database of Glomeromycotan sequences), we performed a meta-analysis on studies that described AM fungal communities from a variety of habitats and host plants. We found a greater proportion of cultured AM fungal taxa in human-impacted habitats. In particular, undisturbed forests and grasslands/savannahs contained significantly fewer cultured taxa than human-impacted sites. We also found that wild plants hosted fewer cultured fungal taxa than cultivated plants. Our data show that natural communities of AM fungi are composed largely of uncultured taxa, and this is particularly pronounced in natural habitats and wild plants. We are better poised to understand the functioning of AM symbioses associated with cultivated plants and human-impacted habitats.
DOI: 10.1111/nph.12894
PubMed: 24946898
Links to Exploration step
pubmed:24946898Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Where the wild things are: looking for uncultured Glomeromycota.</title><author><name sortKey="Ohsowski, Brian M" sort="Ohsowski, Brian M" uniqKey="Ohsowski B" first="Brian M" last="Ohsowski">Brian M. Ohsowski</name><affiliation><nlm:affiliation>Department of Biology, University of British Columbia, Okanagan Campus, 3333 University Way, Kelowna, BC, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Zaitsoff, P Dylan" sort="Zaitsoff, P Dylan" uniqKey="Zaitsoff P" first="P Dylan" last="Zaitsoff">P Dylan Zaitsoff</name></author><author><name sortKey="Opik, Maarja" sort="Opik, Maarja" uniqKey="Opik M" first="Maarja" last="Opik">Maarja Opik</name></author><author><name sortKey="Hart, Miranda M" sort="Hart, Miranda M" uniqKey="Hart M" first="Miranda M" last="Hart">Miranda M. Hart</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2014">2014</date><idno type="RBID">pubmed:24946898</idno><idno type="pmid">24946898</idno><idno type="doi">10.1111/nph.12894</idno><idno type="wicri:Area/Main/Corpus">001823</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001823</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Where the wild things are: looking for uncultured Glomeromycota.</title><author><name sortKey="Ohsowski, Brian M" sort="Ohsowski, Brian M" uniqKey="Ohsowski B" first="Brian M" last="Ohsowski">Brian M. Ohsowski</name><affiliation><nlm:affiliation>Department of Biology, University of British Columbia, Okanagan Campus, 3333 University Way, Kelowna, BC, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Zaitsoff, P Dylan" sort="Zaitsoff, P Dylan" uniqKey="Zaitsoff P" first="P Dylan" last="Zaitsoff">P Dylan Zaitsoff</name></author><author><name sortKey="Opik, Maarja" sort="Opik, Maarja" uniqKey="Opik M" first="Maarja" last="Opik">Maarja Opik</name></author><author><name sortKey="Hart, Miranda M" sort="Hart, Miranda M" uniqKey="Hart M" first="Miranda M" last="Hart">Miranda M. Hart</name></author></analytic><series><title level="j">The New phytologist</title><idno type="eISSN">1469-8137</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Crops, Agricultural (microbiology)</term><term>Ecosystem (MeSH)</term><term>Forests (MeSH)</term><term>Glomeromycota (genetics)</term><term>Grassland (MeSH)</term><term>Humans (MeSH)</term><term>Mycorrhizae (genetics)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Glomeromycota</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Crops, Agricultural</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Ecosystem</term><term>Forests</term><term>Grassland</term><term>Humans</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Our knowledge of Glomeromycotan fungi rests largely on studies of cultured isolates. However, these isolates probably comprise one life-history strategy - ruderal. Consequently, our knowledge of arbuscular mycorrhizal (AM) fungi may be biased towards fungi that occur primarily in disturbed habitats and associate with disturbance-tolerant host plants. We can expect to see a signal for this in DNA-based community surveys: human-impacted habitats and cultivated plants should yield a higher proportion of AM fungal species that have been cultured compared with natural habitats and wild plants. Using the MaarjAM database (a curated open-access database of Glomeromycotan sequences), we performed a meta-analysis on studies that described AM fungal communities from a variety of habitats and host plants. We found a greater proportion of cultured AM fungal taxa in human-impacted habitats. In particular, undisturbed forests and grasslands/savannahs contained significantly fewer cultured taxa than human-impacted sites. We also found that wild plants hosted fewer cultured fungal taxa than cultivated plants. Our data show that natural communities of AM fungi are composed largely of uncultured taxa, and this is particularly pronounced in natural habitats and wild plants. We are better poised to understand the functioning of AM symbioses associated with cultivated plants and human-impacted habitats. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24946898</PMID><DateCompleted><Year>2016</Year><Month>05</Month><Day>09</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1469-8137</ISSN><JournalIssue CitedMedium="Internet"><Volume>204</Volume><Issue>1</Issue><PubDate><Year>2014</Year><Month>Oct</Month></PubDate></JournalIssue><Title>The New phytologist</Title><ISOAbbreviation>New Phytol</ISOAbbreviation></Journal><ArticleTitle>Where the wild things are: looking for uncultured Glomeromycota.</ArticleTitle><Pagination><MedlinePgn>171-9</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/nph.12894</ELocationID><Abstract><AbstractText>Our knowledge of Glomeromycotan fungi rests largely on studies of cultured isolates. However, these isolates probably comprise one life-history strategy - ruderal. Consequently, our knowledge of arbuscular mycorrhizal (AM) fungi may be biased towards fungi that occur primarily in disturbed habitats and associate with disturbance-tolerant host plants. We can expect to see a signal for this in DNA-based community surveys: human-impacted habitats and cultivated plants should yield a higher proportion of AM fungal species that have been cultured compared with natural habitats and wild plants. Using the MaarjAM database (a curated open-access database of Glomeromycotan sequences), we performed a meta-analysis on studies that described AM fungal communities from a variety of habitats and host plants. We found a greater proportion of cultured AM fungal taxa in human-impacted habitats. In particular, undisturbed forests and grasslands/savannahs contained significantly fewer cultured taxa than human-impacted sites. We also found that wild plants hosted fewer cultured fungal taxa than cultivated plants. Our data show that natural communities of AM fungi are composed largely of uncultured taxa, and this is particularly pronounced in natural habitats and wild plants. We are better poised to understand the functioning of AM symbioses associated with cultivated plants and human-impacted habitats. </AbstractText><CopyrightInformation>© 2014 The Authors. New Phytologist © 2014 New Phytologist Trust.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ohsowski</LastName><ForeName>Brian M</ForeName><Initials>BM</Initials><AffiliationInfo><Affiliation>Department of Biology, University of British Columbia, Okanagan Campus, 3333 University Way, Kelowna, BC, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zaitsoff</LastName><ForeName>P Dylan</ForeName><Initials>PD</Initials></Author><Author ValidYN="Y"><LastName>Opik</LastName><ForeName>Maarja</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Hart</LastName><ForeName>Miranda M</ForeName><Initials>MM</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D017418">Meta-Analysis</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>06</Month><Day>19</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>New Phytol</MedlineTA><NlmUniqueID>9882884</NlmUniqueID><ISSNLinking>0028-646X</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D018556" MajorTopicYN="N">Crops, Agricultural</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017753" MajorTopicYN="N">Ecosystem</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D065928" MajorTopicYN="N">Forests</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D055137" MajorTopicYN="N">Glomeromycota</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D065948" MajorTopicYN="N">Grassland</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Diversisporales</Keyword><Keyword MajorTopicYN="N">Glomerales</Keyword><Keyword MajorTopicYN="N">Glomeromycota</Keyword><Keyword MajorTopicYN="N">arbuscular mycorrhizal (AM) fungi</Keyword><Keyword MajorTopicYN="N">disturbance</Keyword><Keyword MajorTopicYN="N">host specificity</Keyword><Keyword MajorTopicYN="N">meta-analysis</Keyword><Keyword MajorTopicYN="N">virtual taxa</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year><Month>02</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2014</Year><Month>05</Month><Day>13</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2014</Year><Month>6</Month><Day>21</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2014</Year><Month>6</Month><Day>21</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>5</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">24946898</ArticleId><ArticleId IdType="doi">10.1111/nph.12894</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/MycorrhizaeV1/Data/Main/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001823 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd -nk 001823 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= MycorrhizaeV1
|flux= Main
|étape= Corpus
|type= RBID
|clé= pubmed:24946898
|texte= Where the wild things are: looking for uncultured Glomeromycota.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Corpus/RBID.i -Sk "pubmed:24946898" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd \
| NlmPubMed2Wicri -a MycorrhizaeV1
| This area was generated with Dilib version V0.6.37. |  |