Global biogeography of the ectomycorrhizal /sebacina lineage (Fungi, Sebacinales) as revealed from comparative phylogenetic analyses.
Identifieur interne : 001814 ( Main/Corpus ); précédent : 001813; suivant : 001815Global biogeography of the ectomycorrhizal /sebacina lineage (Fungi, Sebacinales) as revealed from comparative phylogenetic analyses.
Auteurs : Leho Tedersoo ; Mohammad Bahram ; Martin Ryberg ; Eveli Otsing ; Urmas K Ljalg ; Kessy AbarenkovSource :
- Molecular ecology [ 1365-294X ] ; 2014.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA, Fungal, DNA, Ribosomal Spacer.
- classification : Mycorrhizae.
- genetics : Mycorrhizae.
- Bayes Theorem, Biological Evolution, Ecosystem, Molecular Sequence Data, Phylogeny, Phylogeography, Sequence Analysis, DNA.
Abstract
Compared with plants and animals, large-scale biogeographic patterns of microbes including fungi are poorly understood. By the use of a comparative phylogenetic approach and ancestral state reconstructions, we addressed the global biogeography, rate of evolution and evolutionary origin of the widely distributed ectomycorrhizal (EcM) /sebacina lineage that forms a large proportion of the Sebacinales order. We downloaded all publicly available internal transcribed spacer (ITS) sequences and metadata and supplemented sequence information from three genes to construct dated phylogenies and test biogeographic hypotheses. The /sebacina lineage evolved 45-57 Myr ago that groups it with relatively young EcM taxa in other studies. The most parsimonious origin for /sebacina is inferred to be North American temperate coniferous forests. Among biogeographic traits, region and biome exhibited stronger phylogenetic signal than host family. Consistent with the resource availability (environmental energy) hypothesis, the ITS region is evolving at a faster rate in tropical than nontropical regions. Most biogeographic regions exhibited substantial phylogenetic clustering suggesting a strong impact of dispersal limitation over a large geographic scale. In northern Holarctic regions, however, phylogenetic distances and phylogenetic grouping of isolates indicate multiple recent dispersal events.
DOI: 10.1111/mec.12849
PubMed: 24981058
Links to Exploration step
pubmed:24981058Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Global biogeography of the ectomycorrhizal /sebacina lineage (Fungi, Sebacinales) as revealed from comparative phylogenetic analyses.</title>
<author><name sortKey="Tedersoo, Leho" sort="Tedersoo, Leho" uniqKey="Tedersoo L" first="Leho" last="Tedersoo">Leho Tedersoo</name>
<affiliation><nlm:affiliation>Natural History Museum of Tartu University, 14A Ravila, Tartu, 50411, Estonia.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Bahram, Mohammad" sort="Bahram, Mohammad" uniqKey="Bahram M" first="Mohammad" last="Bahram">Mohammad Bahram</name>
</author>
<author><name sortKey="Ryberg, Martin" sort="Ryberg, Martin" uniqKey="Ryberg M" first="Martin" last="Ryberg">Martin Ryberg</name>
</author>
<author><name sortKey="Otsing, Eveli" sort="Otsing, Eveli" uniqKey="Otsing E" first="Eveli" last="Otsing">Eveli Otsing</name>
</author>
<author><name sortKey="K Ljalg, Urmas" sort="K Ljalg, Urmas" uniqKey="K Ljalg U" first="Urmas" last="K Ljalg">Urmas K Ljalg</name>
</author>
<author><name sortKey="Abarenkov, Kessy" sort="Abarenkov, Kessy" uniqKey="Abarenkov K" first="Kessy" last="Abarenkov">Kessy Abarenkov</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2014">2014</date>
<idno type="RBID">pubmed:24981058</idno>
<idno type="pmid">24981058</idno>
<idno type="doi">10.1111/mec.12849</idno>
<idno type="wicri:Area/Main/Corpus">001814</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001814</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Global biogeography of the ectomycorrhizal /sebacina lineage (Fungi, Sebacinales) as revealed from comparative phylogenetic analyses.</title>
<author><name sortKey="Tedersoo, Leho" sort="Tedersoo, Leho" uniqKey="Tedersoo L" first="Leho" last="Tedersoo">Leho Tedersoo</name>
<affiliation><nlm:affiliation>Natural History Museum of Tartu University, 14A Ravila, Tartu, 50411, Estonia.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Bahram, Mohammad" sort="Bahram, Mohammad" uniqKey="Bahram M" first="Mohammad" last="Bahram">Mohammad Bahram</name>
</author>
<author><name sortKey="Ryberg, Martin" sort="Ryberg, Martin" uniqKey="Ryberg M" first="Martin" last="Ryberg">Martin Ryberg</name>
</author>
<author><name sortKey="Otsing, Eveli" sort="Otsing, Eveli" uniqKey="Otsing E" first="Eveli" last="Otsing">Eveli Otsing</name>
</author>
<author><name sortKey="K Ljalg, Urmas" sort="K Ljalg, Urmas" uniqKey="K Ljalg U" first="Urmas" last="K Ljalg">Urmas K Ljalg</name>
</author>
<author><name sortKey="Abarenkov, Kessy" sort="Abarenkov, Kessy" uniqKey="Abarenkov K" first="Kessy" last="Abarenkov">Kessy Abarenkov</name>
</author>
</analytic>
<series><title level="j">Molecular ecology</title>
<idno type="eISSN">1365-294X</idno>
<imprint><date when="2014" type="published">2014</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bayes Theorem (MeSH)</term>
<term>Biological Evolution (MeSH)</term>
<term>DNA, Fungal (genetics)</term>
<term>DNA, Ribosomal Spacer (genetics)</term>
<term>Ecosystem (MeSH)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Mycorrhizae (classification)</term>
<term>Mycorrhizae (genetics)</term>
<term>Phylogeny (MeSH)</term>
<term>Phylogeography (MeSH)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Fungal</term>
<term>DNA, Ribosomal Spacer</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Mycorrhizae</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Mycorrhizae</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Bayes Theorem</term>
<term>Biological Evolution</term>
<term>Ecosystem</term>
<term>Molecular Sequence Data</term>
<term>Phylogeny</term>
<term>Phylogeography</term>
<term>Sequence Analysis, DNA</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Compared with plants and animals, large-scale biogeographic patterns of microbes including fungi are poorly understood. By the use of a comparative phylogenetic approach and ancestral state reconstructions, we addressed the global biogeography, rate of evolution and evolutionary origin of the widely distributed ectomycorrhizal (EcM) /sebacina lineage that forms a large proportion of the Sebacinales order. We downloaded all publicly available internal transcribed spacer (ITS) sequences and metadata and supplemented sequence information from three genes to construct dated phylogenies and test biogeographic hypotheses. The /sebacina lineage evolved 45-57 Myr ago that groups it with relatively young EcM taxa in other studies. The most parsimonious origin for /sebacina is inferred to be North American temperate coniferous forests. Among biogeographic traits, region and biome exhibited stronger phylogenetic signal than host family. Consistent with the resource availability (environmental energy) hypothesis, the ITS region is evolving at a faster rate in tropical than nontropical regions. Most biogeographic regions exhibited substantial phylogenetic clustering suggesting a strong impact of dispersal limitation over a large geographic scale. In northern Holarctic regions, however, phylogenetic distances and phylogenetic grouping of isolates indicate multiple recent dispersal events. </div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24981058</PMID>
<DateCompleted><Year>2015</Year>
<Month>11</Month>
<Day>02</Day>
</DateCompleted>
<DateRevised><Year>2014</Year>
<Month>08</Month>
<Day>04</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1365-294X</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>23</Volume>
<Issue>16</Issue>
<PubDate><Year>2014</Year>
<Month>Aug</Month>
</PubDate>
</JournalIssue>
<Title>Molecular ecology</Title>
<ISOAbbreviation>Mol Ecol</ISOAbbreviation>
</Journal>
<ArticleTitle>Global biogeography of the ectomycorrhizal /sebacina lineage (Fungi, Sebacinales) as revealed from comparative phylogenetic analyses.</ArticleTitle>
<Pagination><MedlinePgn>4168-83</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1111/mec.12849</ELocationID>
<Abstract><AbstractText>Compared with plants and animals, large-scale biogeographic patterns of microbes including fungi are poorly understood. By the use of a comparative phylogenetic approach and ancestral state reconstructions, we addressed the global biogeography, rate of evolution and evolutionary origin of the widely distributed ectomycorrhizal (EcM) /sebacina lineage that forms a large proportion of the Sebacinales order. We downloaded all publicly available internal transcribed spacer (ITS) sequences and metadata and supplemented sequence information from three genes to construct dated phylogenies and test biogeographic hypotheses. The /sebacina lineage evolved 45-57 Myr ago that groups it with relatively young EcM taxa in other studies. The most parsimonious origin for /sebacina is inferred to be North American temperate coniferous forests. Among biogeographic traits, region and biome exhibited stronger phylogenetic signal than host family. Consistent with the resource availability (environmental energy) hypothesis, the ITS region is evolving at a faster rate in tropical than nontropical regions. Most biogeographic regions exhibited substantial phylogenetic clustering suggesting a strong impact of dispersal limitation over a large geographic scale. In northern Holarctic regions, however, phylogenetic distances and phylogenetic grouping of isolates indicate multiple recent dispersal events. </AbstractText>
<CopyrightInformation>© 2014 John Wiley & Sons Ltd.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Tedersoo</LastName>
<ForeName>Leho</ForeName>
<Initials>L</Initials>
<AffiliationInfo><Affiliation>Natural History Museum of Tartu University, 14A Ravila, Tartu, 50411, Estonia.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Bahram</LastName>
<ForeName>Mohammad</ForeName>
<Initials>M</Initials>
</Author>
<Author ValidYN="Y"><LastName>Ryberg</LastName>
<ForeName>Martin</ForeName>
<Initials>M</Initials>
</Author>
<Author ValidYN="Y"><LastName>Otsing</LastName>
<ForeName>Eveli</ForeName>
<Initials>E</Initials>
</Author>
<Author ValidYN="Y"><LastName>Kõljalg</LastName>
<ForeName>Urmas</ForeName>
<Initials>U</Initials>
</Author>
<Author ValidYN="Y"><LastName>Abarenkov</LastName>
<ForeName>Kessy</ForeName>
<Initials>K</Initials>
</Author>
</AuthorList>
<Language>eng</Language>
<DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName>
<AccessionNumberList><AccessionNumber>AF384860</AccessionNumber>
<AccessionNumber>AY509550</AccessionNumber>
<AccessionNumber>DQ520103</AccessionNumber>
<AccessionNumber>KF313868</AccessionNumber>
<AccessionNumber>KF313918</AccessionNumber>
</AccessionNumberList>
</DataBank>
</DataBankList>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2014</Year>
<Month>07</Month>
<Day>23</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Mol Ecol</MedlineTA>
<NlmUniqueID>9214478</NlmUniqueID>
<ISSNLinking>0962-1083</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D021903">DNA, Ribosomal Spacer</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D001499" MajorTopicYN="N">Bayes Theorem</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005075" MajorTopicYN="Y">Biological Evolution</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D021903" MajorTopicYN="N">DNA, Ribosomal Spacer</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017753" MajorTopicYN="N">Ecosystem</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D058974" MajorTopicYN="N">Phylogeography</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Basidiomycota</Keyword>
<Keyword MajorTopicYN="N">ancestral state reconstruction</Keyword>
<Keyword MajorTopicYN="N">biogeographic regions</Keyword>
<Keyword MajorTopicYN="N">ectomycorrhizal symbiosis</Keyword>
<Keyword MajorTopicYN="N">molecular clock</Keyword>
<Keyword MajorTopicYN="N">phylogenetic conservatism</Keyword>
<Keyword MajorTopicYN="N">rate of evolution</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year>
<Month>12</Month>
<Day>17</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="revised"><Year>2014</Year>
<Month>06</Month>
<Day>18</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2014</Year>
<Month>06</Month>
<Day>20</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2014</Year>
<Month>7</Month>
<Day>2</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2014</Year>
<Month>7</Month>
<Day>2</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2015</Year>
<Month>11</Month>
<Day>3</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">24981058</ArticleId>
<ArticleId IdType="doi">10.1111/mec.12849</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/MycorrhizaeV1/Data/Main/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001814 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd -nk 001814 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Bois |area= MycorrhizaeV1 |flux= Main |étape= Corpus |type= RBID |clé= pubmed:24981058 |texte= Global biogeography of the ectomycorrhizal /sebacina lineage (Fungi, Sebacinales) as revealed from comparative phylogenetic analyses. }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Corpus/RBID.i -Sk "pubmed:24981058" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd \ | NlmPubMed2Wicri -a MycorrhizaeV1
![]() | This area was generated with Dilib version V0.6.37. | ![]() |