Identity and specificity of Rhizoctonia-like fungi from different populations of Liparis japonica (Orchidaceae) in Northeast China.
Identifieur interne : 001760 ( Main/Corpus ); précédent : 001759; suivant : 001761Identity and specificity of Rhizoctonia-like fungi from different populations of Liparis japonica (Orchidaceae) in Northeast China.
Auteurs : Rui Ding ; Xu-Hui Chen ; Li-Jun Zhang ; Xiao-Dan Yu ; Bo Qu ; Ru Duan ; Yu-Feng XuSource :
- PloS one [ 1932-6203 ] ; 2014.
English descriptors
- KwdEn :
- MESH :
- chemical : DNA, Intergenic.
- geographic : China.
- genetics : Mycorrhizae, Rhizoctonia.
- isolation & purification : Mycorrhizae, Rhizoctonia.
- microbiology : Orchidaceae.
- pathogenicity : Rhizoctonia.
- Host Specificity, Phylogeny.
Abstract
Mycorrhizal association is known to be important to orchid species, and a complete understanding of the fungi that form mycorrhizas is required for orchid ecology and conservation. Liparis japonica (Orchidaceae) is a widespread terrestrial photosynthetic orchid in Northeast China. Previously, we found the genetic diversity of this species has been reduced recent years due to habitat destruction and fragmentation, but little was known about the relationship between this orchid species and the mycorrhizal fungi. The Rhizoctonia-like fungi are the commonly accepted mycorrhizal fungi associated with orchids. In this study, the distribution, diversity and specificity of culturable Rhizoctonia-like fungi associated with L. japonica species were investigated from seven populations in Northeast China. Among the 201 endophytic fungal isolates obtained, 86 Rhizoctonia-like fungi were identified based on morphological characters and molecular methods, and the ITS sequences and phylogenetic analysis revealed that all these Rhizoctonia-like fungi fell in the same main clade and were closely related to those of Tulasnella calospora species group. These findings indicated the high mycorrhizal specificity existed in L. japonica species regardless of habitats at least in Northeast China. Our results also supported the wide distribution of this fungal partner, and implied that the decline of L. japonica in Northeast China did not result from high mycorrhizal specificity. Using culture-dependent technology, these mycorrhizal fungal isolates might be important sources for the further utilizing in orchids conservation.
DOI: 10.1371/journal.pone.0105573
PubMed: 25140872
PubMed Central: PMC4139347
Links to Exploration step
pubmed:25140872Le document en format XML
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Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Yu, Xiao Dan" sort="Yu, Xiao Dan" uniqKey="Yu X" first="Xiao-Dan" last="Yu">Xiao-Dan Yu</name><affiliation><nlm:affiliation>College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Qu, Bo" sort="Qu, Bo" uniqKey="Qu B" first="Bo" last="Qu">Bo Qu</name><affiliation><nlm:affiliation>College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Duan, Ru" sort="Duan, Ru" uniqKey="Duan R" first="Ru" last="Duan">Ru Duan</name><affiliation><nlm:affiliation>College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Xu, Yu Feng" sort="Xu, Yu Feng" uniqKey="Xu Y" first="Yu-Feng" last="Xu">Yu-Feng Xu</name><affiliation><nlm:affiliation>College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning, People's Republic of China.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2014">2014</date><idno type="RBID">pubmed:25140872</idno><idno type="pmid">25140872</idno><idno type="doi">10.1371/journal.pone.0105573</idno><idno type="pmc">PMC4139347</idno><idno type="wicri:Area/Main/Corpus">001760</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001760</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Identity and specificity of Rhizoctonia-like fungi from different populations of Liparis japonica (Orchidaceae) in Northeast China.</title><author><name sortKey="Ding, Rui" sort="Ding, Rui" uniqKey="Ding R" first="Rui" last="Ding">Rui Ding</name><affiliation><nlm:affiliation>College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Chen, Xu Hui" sort="Chen, Xu Hui" uniqKey="Chen X" first="Xu-Hui" last="Chen">Xu-Hui Chen</name><affiliation><nlm:affiliation>College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Zhang, Li Jun" sort="Zhang, Li Jun" uniqKey="Zhang L" first="Li-Jun" last="Zhang">Li-Jun Zhang</name><affiliation><nlm:affiliation>College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Yu, Xiao Dan" sort="Yu, Xiao Dan" uniqKey="Yu X" first="Xiao-Dan" last="Yu">Xiao-Dan Yu</name><affiliation><nlm:affiliation>College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Qu, Bo" sort="Qu, Bo" uniqKey="Qu B" first="Bo" last="Qu">Bo Qu</name><affiliation><nlm:affiliation>College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Duan, Ru" sort="Duan, Ru" uniqKey="Duan R" first="Ru" last="Duan">Ru Duan</name><affiliation><nlm:affiliation>College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Xu, Yu Feng" sort="Xu, Yu Feng" uniqKey="Xu Y" first="Yu-Feng" last="Xu">Yu-Feng Xu</name><affiliation><nlm:affiliation>College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning, People's Republic of China.</nlm:affiliation></affiliation></author></analytic><series><title level="j">PloS one</title><idno type="eISSN">1932-6203</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>China (MeSH)</term><term>DNA, Intergenic (MeSH)</term><term>Host Specificity (MeSH)</term><term>Mycorrhizae (genetics)</term><term>Mycorrhizae (isolation & purification)</term><term>Orchidaceae (microbiology)</term><term>Phylogeny (MeSH)</term><term>Rhizoctonia (genetics)</term><term>Rhizoctonia (isolation & purification)</term><term>Rhizoctonia (pathogenicity)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>DNA, Intergenic</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>China</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Mycorrhizae</term><term>Rhizoctonia</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Mycorrhizae</term><term>Rhizoctonia</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Orchidaceae</term></keywords><keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Rhizoctonia</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Host Specificity</term><term>Phylogeny</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Mycorrhizal association is known to be important to orchid species, and a complete understanding of the fungi that form mycorrhizas is required for orchid ecology and conservation. Liparis japonica (Orchidaceae) is a widespread terrestrial photosynthetic orchid in Northeast China. Previously, we found the genetic diversity of this species has been reduced recent years due to habitat destruction and fragmentation, but little was known about the relationship between this orchid species and the mycorrhizal fungi. The Rhizoctonia-like fungi are the commonly accepted mycorrhizal fungi associated with orchids. In this study, the distribution, diversity and specificity of culturable Rhizoctonia-like fungi associated with L. japonica species were investigated from seven populations in Northeast China. Among the 201 endophytic fungal isolates obtained, 86 Rhizoctonia-like fungi were identified based on morphological characters and molecular methods, and the ITS sequences and phylogenetic analysis revealed that all these Rhizoctonia-like fungi fell in the same main clade and were closely related to those of Tulasnella calospora species group. These findings indicated the high mycorrhizal specificity existed in L. japonica species regardless of habitats at least in Northeast China. Our results also supported the wide distribution of this fungal partner, and implied that the decline of L. japonica in Northeast China did not result from high mycorrhizal specificity. Using culture-dependent technology, these mycorrhizal fungal isolates might be important sources for the further utilizing in orchids conservation. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25140872</PMID><DateCompleted><Year>2015</Year><Month>11</Month><Day>09</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN><JournalIssue CitedMedium="Internet"><Volume>9</Volume><Issue>8</Issue><PubDate><Year>2014</Year></PubDate></JournalIssue><Title>PloS one</Title><ISOAbbreviation>PLoS One</ISOAbbreviation></Journal><ArticleTitle>Identity and specificity of Rhizoctonia-like fungi from different populations of Liparis japonica (Orchidaceae) in Northeast China.</ArticleTitle><Pagination><MedlinePgn>e105573</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0105573</ELocationID><Abstract><AbstractText>Mycorrhizal association is known to be important to orchid species, and a complete understanding of the fungi that form mycorrhizas is required for orchid ecology and conservation. Liparis japonica (Orchidaceae) is a widespread terrestrial photosynthetic orchid in Northeast China. Previously, we found the genetic diversity of this species has been reduced recent years due to habitat destruction and fragmentation, but little was known about the relationship between this orchid species and the mycorrhizal fungi. The Rhizoctonia-like fungi are the commonly accepted mycorrhizal fungi associated with orchids. In this study, the distribution, diversity and specificity of culturable Rhizoctonia-like fungi associated with L. japonica species were investigated from seven populations in Northeast China. Among the 201 endophytic fungal isolates obtained, 86 Rhizoctonia-like fungi were identified based on morphological characters and molecular methods, and the ITS sequences and phylogenetic analysis revealed that all these Rhizoctonia-like fungi fell in the same main clade and were closely related to those of Tulasnella calospora species group. These findings indicated the high mycorrhizal specificity existed in L. japonica species regardless of habitats at least in Northeast China. Our results also supported the wide distribution of this fungal partner, and implied that the decline of L. japonica in Northeast China did not result from high mycorrhizal specificity. Using culture-dependent technology, these mycorrhizal fungal isolates might be important sources for the further utilizing in orchids conservation. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ding</LastName><ForeName>Rui</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning, People's Republic of China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Xu-Hui</ForeName><Initials>XH</Initials><AffiliationInfo><Affiliation>College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning, People's Republic of China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Li-Jun</ForeName><Initials>LJ</Initials><AffiliationInfo><Affiliation>College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning, People's Republic of China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yu</LastName><ForeName>Xiao-Dan</ForeName><Initials>XD</Initials><AffiliationInfo><Affiliation>College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning, People's Republic of China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Qu</LastName><ForeName>Bo</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning, People's Republic of China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Duan</LastName><ForeName>Ru</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning, People's Republic of China.</Affiliation></AffiliationInfo></Author><Author 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