Mycorrhizal fungal diversity and community composition in a lithophytic and epiphytic orchid.
Identifieur interne : 001691 ( Main/Corpus ); précédent : 001690; suivant : 001692Mycorrhizal fungal diversity and community composition in a lithophytic and epiphytic orchid.
Auteurs : Xiaoke Xing ; Xuege Gai ; Qiang Liu ; Miranda M. Hart ; Shunxing GuoSource :
- Mycorrhiza [ 1432-1890 ] ; 2015.
English descriptors
- KwdEn :
- MESH :
- classification : Mycorrhizae.
- microbiology : Orchidaceae.
- physiology : Mycorrhizae.
- Biodiversity, Ecosystem, Genes, Fungal, Phenotype, Phylogeny, Symbiosis.
Abstract
Some orchid species are present as epiphytes and lithophytes in the same habitat, but little is known about the differences of their mycorrhizal fungal communities. We used Coelogyne viscosa, which occurs both as an epiphyte and a lithophyte, as a study system to investigate orchid mycorrhizal fungal communities in lithophytes and epiphytes in Xishuangbanna National Nature Reserve (Yunnan Province, China). Twenty-three fungal operational taxonomic units (OTUs) from 18 sampling sites were identified. Results indicated that mycorrhizal fungal community composition was different between epi- and lithophytes. When we analyzed the Tulasnellaceae and Sebacinales communities separately, we found that the Sebacinales fungal communities were significantly different in the two growth habitats, but the Tulasnellaceae fungal communities were not. Our results provide evidence for distinct orchid mycorrhiza fungal communities depending on the growth habitat of the orchid. Consistent with some recent investigations of mycorrhizal fungus community composition, this study suggests that for one orchid, growth habitat affects mycorrhizal symbioses.
DOI: 10.1007/s00572-014-0612-5
PubMed: 25319065
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Hart</name></author><author><name sortKey="Guo, Shunxing" sort="Guo, Shunxing" uniqKey="Guo S" first="Shunxing" last="Guo">Shunxing Guo</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2015">2015</date><idno type="RBID">pubmed:25319065</idno><idno type="pmid">25319065</idno><idno type="doi">10.1007/s00572-014-0612-5</idno><idno type="wicri:Area/Main/Corpus">001691</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001691</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Mycorrhizal fungal diversity and community composition in a lithophytic and epiphytic orchid.</title><author><name sortKey="Xing, Xiaoke" sort="Xing, Xiaoke" uniqKey="Xing X" first="Xiaoke" last="Xing">Xiaoke Xing</name><affiliation><nlm:affiliation>Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100193, China, xkxing2009@hotmail.com.</nlm:affiliation></affiliation></author><author><name sortKey="Gai, Xuege" sort="Gai, Xuege" uniqKey="Gai X" first="Xuege" last="Gai">Xuege Gai</name></author><author><name sortKey="Liu, Qiang" sort="Liu, Qiang" uniqKey="Liu Q" first="Qiang" last="Liu">Qiang Liu</name></author><author><name sortKey="Hart, Miranda M" sort="Hart, Miranda M" uniqKey="Hart M" first="Miranda M" last="Hart">Miranda M. Hart</name></author><author><name sortKey="Guo, Shunxing" sort="Guo, Shunxing" uniqKey="Guo S" first="Shunxing" last="Guo">Shunxing Guo</name></author></analytic><series><title level="j">Mycorrhiza</title><idno type="eISSN">1432-1890</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Biodiversity (MeSH)</term><term>Ecosystem (MeSH)</term><term>Genes, Fungal (MeSH)</term><term>Mycorrhizae (classification)</term><term>Mycorrhizae (physiology)</term><term>Orchidaceae (microbiology)</term><term>Phenotype (MeSH)</term><term>Phylogeny (MeSH)</term><term>Symbiosis (MeSH)</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Orchidaceae</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biodiversity</term><term>Ecosystem</term><term>Genes, Fungal</term><term>Phenotype</term><term>Phylogeny</term><term>Symbiosis</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Some orchid species are present as epiphytes and lithophytes in the same habitat, but little is known about the differences of their mycorrhizal fungal communities. We used Coelogyne viscosa, which occurs both as an epiphyte and a lithophyte, as a study system to investigate orchid mycorrhizal fungal communities in lithophytes and epiphytes in Xishuangbanna National Nature Reserve (Yunnan Province, China). Twenty-three fungal operational taxonomic units (OTUs) from 18 sampling sites were identified. Results indicated that mycorrhizal fungal community composition was different between epi- and lithophytes. When we analyzed the Tulasnellaceae and Sebacinales communities separately, we found that the Sebacinales fungal communities were significantly different in the two growth habitats, but the Tulasnellaceae fungal communities were not. Our results provide evidence for distinct orchid mycorrhiza fungal communities depending on the growth habitat of the orchid. Consistent with some recent investigations of mycorrhizal fungus community composition, this study suggests that for one orchid, growth habitat affects mycorrhizal symbioses.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25319065</PMID><DateCompleted><Year>2016</Year><Month>01</Month><Day>12</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-1890</ISSN><JournalIssue CitedMedium="Internet"><Volume>25</Volume><Issue>4</Issue><PubDate><Year>2015</Year><Month>May</Month></PubDate></JournalIssue><Title>Mycorrhiza</Title><ISOAbbreviation>Mycorrhiza</ISOAbbreviation></Journal><ArticleTitle>Mycorrhizal fungal diversity and community composition in a lithophytic and epiphytic orchid.</ArticleTitle><Pagination><MedlinePgn>289-96</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00572-014-0612-5</ELocationID><Abstract><AbstractText>Some orchid species are present as epiphytes and lithophytes in the same habitat, but little is known about the differences of their mycorrhizal fungal communities. We used Coelogyne viscosa, which occurs both as an epiphyte and a lithophyte, as a study system to investigate orchid mycorrhizal fungal communities in lithophytes and epiphytes in Xishuangbanna National Nature Reserve (Yunnan Province, China). Twenty-three fungal operational taxonomic units (OTUs) from 18 sampling sites were identified. Results indicated that mycorrhizal fungal community composition was different between epi- and lithophytes. When we analyzed the Tulasnellaceae and Sebacinales communities separately, we found that the Sebacinales fungal communities were significantly different in the two growth habitats, but the Tulasnellaceae fungal communities were not. Our results provide evidence for distinct orchid mycorrhiza fungal communities depending on the growth habitat of the orchid. Consistent with some recent investigations of mycorrhizal fungus community composition, this study suggests that for one orchid, growth habitat affects mycorrhizal symbioses.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Xing</LastName><ForeName>Xiaoke</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100193, China, xkxing2009@hotmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gai</LastName><ForeName>Xuege</ForeName><Initials>X</Initials></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Qiang</ForeName><Initials>Q</Initials></Author><Author ValidYN="Y"><LastName>Hart</LastName><ForeName>Miranda M</ForeName><Initials>MM</Initials></Author><Author 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PubStatus="entrez"><Year>2014</Year><Month>10</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2014</Year><Month>10</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>1</Month><Day>13</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">25319065</ArticleId><ArticleId IdType="doi">10.1007/s00572-014-0612-5</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>New Phytol. 2011 Oct;192(2):518-28</Citation><ArticleIdList><ArticleId IdType="pubmed">21668874</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2008;177(4):1020-33</Citation><ArticleIdList><ArticleId IdType="pubmed">18086221</ArticleId></ArticleIdList></Reference><Reference><Citation>Mycorrhiza. 2010 Nov;20(8):559-68</Citation><ArticleIdList><ArticleId IdType="pubmed">20217434</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2014 Apr;202(2):616-27</Citation><ArticleIdList><ArticleId IdType="pubmed">24325257</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2006;171(2):405-16</Citation><ArticleIdList><ArticleId IdType="pubmed">16866946</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 2013 Apr;22(8):2341-54</Citation><ArticleIdList><ArticleId IdType="pubmed">23432406</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2011 Oct;28(10):2731-9</Citation><ArticleIdList><ArticleId IdType="pubmed">21546353</ArticleId></ArticleIdList></Reference><Reference><Citation>Am J Bot. 2008 Feb;95(2):156-64</Citation><ArticleIdList><ArticleId IdType="pubmed">21632341</ArticleId></ArticleIdList></Reference><Reference><Citation>Am J Bot. 2002 Nov;89(11):1852-8</Citation><ArticleIdList><ArticleId IdType="pubmed">21665614</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 2010 Aug;19(15):3226-42</Citation><ArticleIdList><ArticleId IdType="pubmed">20618899</ArticleId></ArticleIdList></Reference><Reference><Citation>Mycorrhiza. 2007 Sep;17(6):475-86</Citation><ArticleIdList><ArticleId IdType="pubmed">17582535</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 2012 Mar;21(6):1511-23</Citation><ArticleIdList><ArticleId IdType="pubmed">22272942</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Bioinformatics. 2006 Aug 07;7:371</Citation><ArticleIdList><ArticleId IdType="pubmed">16893466</ArticleId></ArticleIdList></Reference><Reference><Citation>Am J Bot. 2010 Apr;97(4):628-43</Citation><ArticleIdList><ArticleId IdType="pubmed">21622425</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Biol Sci. 2011 Feb 22;278(1705):554-9</Citation><ArticleIdList><ArticleId IdType="pubmed">20610425</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2005 Dec;71(12):8228-35</Citation><ArticleIdList><ArticleId IdType="pubmed">16332807</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 2005 Feb;14(2):613-26</Citation><ArticleIdList><ArticleId IdType="pubmed">15660950</ArticleId></ArticleIdList></Reference><Reference><Citation>Am Nat. 2011 Feb;177(2):E54-68</Citation><ArticleIdList><ArticleId IdType="pubmed">21460551</ArticleId></ArticleIdList></Reference><Reference><Citation>Mycol Res. 2003 Oct;107(Pt 10):1210-20</Citation><ArticleIdList><ArticleId IdType="pubmed">14635769</ArticleId></ArticleIdList></Reference><Reference><Citation>Philos Trans R Soc Lond B Biol Sci. 2004 Oct 29;359(1450):1523-35</Citation><ArticleIdList><ArticleId IdType="pubmed">15519970</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2012 Jan;193(2):454-64</Citation><ArticleIdList><ArticleId IdType="pubmed">21955096</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2007 Jun 22;316(5832):1746-8</Citation><ArticleIdList><ArticleId IdType="pubmed">17588930</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 2010 Sep;19(18):4086-95</Citation><ArticleIdList><ArticleId IdType="pubmed">20735736</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2010 Jan;185(2):529-42</Citation><ArticleIdList><ArticleId IdType="pubmed">19878464</ArticleId></ArticleIdList></Reference><Reference><Citation>Evolution. 2007 Jun;61(6):1380-90</Citation><ArticleIdList><ArticleId IdType="pubmed">17542847</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2012;7(8):e42212</Citation><ArticleIdList><ArticleId IdType="pubmed">22870305</ArticleId></ArticleIdList></Reference><Reference><Citation>Ecology. 2006 Apr;87(4):903-11</Citation><ArticleIdList><ArticleId IdType="pubmed">16676534</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Methods. 2012 Jul 30;9(8):772</Citation><ArticleIdList><ArticleId IdType="pubmed">22847109</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 2010 Jul;19(14):3008-17</Citation><ArticleIdList><ArticleId IdType="pubmed">20584135</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2007 Nov 1;23(21):2947-8</Citation><ArticleIdList><ArticleId IdType="pubmed">17846036</ArticleId></ArticleIdList></Reference><Reference><Citation>Ecol Lett. 2008 Oct;11(10):995-1003</Citation><ArticleIdList><ArticleId IdType="pubmed">18673385</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Phylogenet Evol. 2004 Nov;33(2):251-8</Citation><ArticleIdList><ArticleId IdType="pubmed">15336661</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 2012 Oct;21(20):5098-109</Citation><ArticleIdList><ArticleId 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