Strong effect of climate on ectomycorrhizal fungal composition: evidence from range overlap between two mountains.
Identifieur interne : 001563 ( Main/Corpus ); précédent : 001562; suivant : 001564Strong effect of climate on ectomycorrhizal fungal composition: evidence from range overlap between two mountains.
Auteurs : Yumiko Miyamoto ; Atsushi Sakai ; Masahira Hattori ; Kazuhide NaraSource :
- The ISME journal [ 1751-7370 ] ; 2015.
English descriptors
- KwdEn :
- Altitude (MeSH), Biodiversity (MeSH), Carbon (MeSH), Climate Change (MeSH), DNA, Fungal (analysis), DNA, Ribosomal (analysis), Forests (MeSH), Japan (MeSH), Mycorrhizae (genetics), Mycorrhizae (isolation & purification), Plants (microbiology), Soil Microbiology (MeSH), Symbiosis (MeSH), Trees (microbiology).
- MESH :
- chemical , analysis : DNA, Fungal, DNA, Ribosomal.
- chemical : Carbon.
- genetics : Mycorrhizae.
- isolation & purification : Mycorrhizae.
- microbiology : Plants, Trees.
- Altitude, Biodiversity, Climate Change, Forests, Japan, Soil Microbiology, Symbiosis.
Abstract
Separating the effects of environmental factors and spatial distance on microbial composition is difficult when these factors covary. We examined the composition of ectomycorrhizal (EM) fungi along elevation gradients on geographically distant mountains to clarify the effect of climate at the regional scale. Soil cores were collected from various forest types along an elevation gradient in southwestern Japan. Fungal species were identified by the internal transcribed spacer regions of the rDNA using direct sequencing. The occurrence of fungal species in this study was compared with a previous study conducted on a mountain separated by ∼550 km. In total, we recorded 454 EM fungi from 330 of 350 soil cores. Forty-seven fungal species (∼20% of the total excluding singletons) were shared between two mountains, mostly between similar forest types on both mountains. Variation partitioning in redundancy analysis revealed that climate explained the largest variance in EM fungal composition. The similarity of forest tree composition, which is usually determined by climatic conditions, was positively correlated with the similarity of the EM fungal composition. However, the lack of large host effects implied that communities of forest trees and EM fungi may be determined independently by climate. Our data provide important insights that host plants and mutualistic fungi may respond to climate change idiosyncratically, potentially altering carbon and nutrient cycles in relation to the plant-fungus associations.
DOI: 10.1038/ismej.2015.8
PubMed: 25647348
PubMed Central: PMC4511943
Links to Exploration step
pubmed:25647348Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Strong effect of climate on ectomycorrhizal fungal composition: evidence from range overlap between two mountains.</title><author><name sortKey="Miyamoto, Yumiko" sort="Miyamoto, Yumiko" uniqKey="Miyamoto Y" first="Yumiko" last="Miyamoto">Yumiko Miyamoto</name><affiliation><nlm:affiliation>Department of Natural Environmental Studies, The University of Tokyo, Tokyo, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Sakai, Atsushi" sort="Sakai, Atsushi" uniqKey="Sakai A" first="Atsushi" last="Sakai">Atsushi Sakai</name><affiliation><nlm:affiliation>Forestry and Forest Products Research Institute, Kochi, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Hattori, Masahira" sort="Hattori, Masahira" uniqKey="Hattori M" first="Masahira" last="Hattori">Masahira Hattori</name><affiliation><nlm:affiliation>Center for Omics and Bioinformatics, The University of Tokyo, Tokyo, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Nara, Kazuhide" sort="Nara, Kazuhide" uniqKey="Nara K" first="Kazuhide" last="Nara">Kazuhide Nara</name><affiliation><nlm:affiliation>Department of Natural Environmental Studies, The University of Tokyo, Tokyo, Japan.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2015">2015</date><idno type="RBID">pubmed:25647348</idno><idno type="pmid">25647348</idno><idno type="doi">10.1038/ismej.2015.8</idno><idno type="pmc">PMC4511943</idno><idno type="wicri:Area/Main/Corpus">001563</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001563</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Strong effect of climate on ectomycorrhizal fungal composition: evidence from range overlap between two mountains.</title><author><name sortKey="Miyamoto, Yumiko" sort="Miyamoto, Yumiko" uniqKey="Miyamoto Y" first="Yumiko" last="Miyamoto">Yumiko Miyamoto</name><affiliation><nlm:affiliation>Department of Natural Environmental Studies, The University of Tokyo, Tokyo, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Sakai, Atsushi" sort="Sakai, Atsushi" uniqKey="Sakai A" first="Atsushi" last="Sakai">Atsushi Sakai</name><affiliation><nlm:affiliation>Forestry and Forest Products Research Institute, Kochi, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Hattori, Masahira" sort="Hattori, Masahira" uniqKey="Hattori M" first="Masahira" last="Hattori">Masahira Hattori</name><affiliation><nlm:affiliation>Center for Omics and Bioinformatics, The University of Tokyo, Tokyo, Japan.</nlm:affiliation></affiliation></author><author><name sortKey="Nara, Kazuhide" sort="Nara, Kazuhide" uniqKey="Nara K" first="Kazuhide" last="Nara">Kazuhide Nara</name><affiliation><nlm:affiliation>Department of Natural Environmental Studies, The University of Tokyo, Tokyo, Japan.</nlm:affiliation></affiliation></author></analytic><series><title level="j">The ISME journal</title><idno type="eISSN">1751-7370</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Altitude (MeSH)</term><term>Biodiversity (MeSH)</term><term>Carbon (MeSH)</term><term>Climate Change (MeSH)</term><term>DNA, Fungal (analysis)</term><term>DNA, Ribosomal (analysis)</term><term>Forests (MeSH)</term><term>Japan (MeSH)</term><term>Mycorrhizae (genetics)</term><term>Mycorrhizae (isolation & purification)</term><term>Plants (microbiology)</term><term>Soil Microbiology (MeSH)</term><term>Symbiosis (MeSH)</term><term>Trees (microbiology)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>DNA, Fungal</term><term>DNA, Ribosomal</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Carbon</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plants</term><term>Trees</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Altitude</term><term>Biodiversity</term><term>Climate Change</term><term>Forests</term><term>Japan</term><term>Soil Microbiology</term><term>Symbiosis</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Separating the effects of environmental factors and spatial distance on microbial composition is difficult when these factors covary. We examined the composition of ectomycorrhizal (EM) fungi along elevation gradients on geographically distant mountains to clarify the effect of climate at the regional scale. Soil cores were collected from various forest types along an elevation gradient in southwestern Japan. Fungal species were identified by the internal transcribed spacer regions of the rDNA using direct sequencing. The occurrence of fungal species in this study was compared with a previous study conducted on a mountain separated by ∼550 km. In total, we recorded 454 EM fungi from 330 of 350 soil cores. Forty-seven fungal species (∼20% of the total excluding singletons) were shared between two mountains, mostly between similar forest types on both mountains. Variation partitioning in redundancy analysis revealed that climate explained the largest variance in EM fungal composition. The similarity of forest tree composition, which is usually determined by climatic conditions, was positively correlated with the similarity of the EM fungal composition. However, the lack of large host effects implied that communities of forest trees and EM fungi may be determined independently by climate. Our data provide important insights that host plants and mutualistic fungi may respond to climate change idiosyncratically, potentially altering carbon and nutrient cycles in relation to the plant-fungus associations. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">25647348</PMID><DateCompleted><Year>2016</Year><Month>03</Month><Day>14</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>02</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1751-7370</ISSN><JournalIssue CitedMedium="Internet"><Volume>9</Volume><Issue>8</Issue><PubDate><Year>2015</Year><Month>Aug</Month></PubDate></JournalIssue><Title>The ISME journal</Title><ISOAbbreviation>ISME J</ISOAbbreviation></Journal><ArticleTitle>Strong effect of climate on ectomycorrhizal fungal composition: evidence from range overlap between two mountains.</ArticleTitle><Pagination><MedlinePgn>1870-9</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/ismej.2015.8</ELocationID><Abstract><AbstractText>Separating the effects of environmental factors and spatial distance on microbial composition is difficult when these factors covary. We examined the composition of ectomycorrhizal (EM) fungi along elevation gradients on geographically distant mountains to clarify the effect of climate at the regional scale. Soil cores were collected from various forest types along an elevation gradient in southwestern Japan. Fungal species were identified by the internal transcribed spacer regions of the rDNA using direct sequencing. The occurrence of fungal species in this study was compared with a previous study conducted on a mountain separated by ∼550 km. In total, we recorded 454 EM fungi from 330 of 350 soil cores. Forty-seven fungal species (∼20% of the total excluding singletons) were shared between two mountains, mostly between similar forest types on both mountains. Variation partitioning in redundancy analysis revealed that climate explained the largest variance in EM fungal composition. The similarity of forest tree composition, which is usually determined by climatic conditions, was positively correlated with the similarity of the EM fungal composition. However, the lack of large host effects implied that communities of forest trees and EM fungi may be determined independently by climate. Our data provide important insights that host plants and mutualistic fungi may respond to climate change idiosyncratically, potentially altering carbon and nutrient cycles in relation to the plant-fungus associations. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Miyamoto</LastName><ForeName>Yumiko</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Department of Natural Environmental Studies, The University of Tokyo, Tokyo, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sakai</LastName><ForeName>Atsushi</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Forestry and Forest Products Research Institute, Kochi, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hattori</LastName><ForeName>Masahira</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Center for Omics and Bioinformatics, The University of Tokyo, Tokyo, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nara</LastName><ForeName>Kazuhide</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Department of Natural Environmental Studies, The University of Tokyo, Tokyo, Japan.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>02</Month><Day>03</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>ISME J</MedlineTA><NlmUniqueID>101301086</NlmUniqueID><ISSNLinking>1751-7362</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004275">DNA, 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