Community dynamics of arbuscular mycorrhizal fungi in high-input and intensively irrigated rice cultivation systems.
Identifieur interne : 001554 ( Main/Corpus ); précédent : 001553; suivant : 001555Community dynamics of arbuscular mycorrhizal fungi in high-input and intensively irrigated rice cultivation systems.
Auteurs : Yutao Wang ; Ting Li ; Yingwei Li ; Lars Olof Björn ; S Ren Rosendahl ; P L Axel Olsson ; Shaoshan Li ; Xuelin FuSource :
- Applied and environmental microbiology [ 1098-5336 ] ; 2015.
English descriptors
- KwdEn :
- Agriculture (methods), DNA, Fungal (genetics), DNA, Fungal (metabolism), DNA, Intergenic (genetics), DNA, Intergenic (metabolism), Molecular Sequence Data (MeSH), Mycorrhizae (classification), Mycorrhizae (genetics), Mycorrhizae (metabolism), Oryza (growth & development), Oryza (microbiology), Phylogeny (MeSH), Plant Roots (microbiology), Sequence Analysis, DNA (MeSH), Soil Microbiology (MeSH), Wetlands (MeSH).
- MESH :
- chemical , genetics : DNA, Fungal, DNA, Intergenic.
- chemical , metabolism : DNA, Fungal, DNA, Intergenic.
- classification : Mycorrhizae.
- genetics : Mycorrhizae.
- growth & development : Oryza.
- metabolism : Mycorrhizae.
- methods : Agriculture.
- microbiology : Oryza, Plant Roots.
- Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA, Soil Microbiology, Wetlands.
Abstract
Application of a mycorrhizal inoculum could be one way to increase the yield of rice plants and reduce the application of fertilizer. We therefore studied arbuscular mycorrhizal fungi (AMF) in the roots of wetland rice (Oryza sativa L.) collected at the seedling, tillering, heading, and ripening stages in four paddy wetlands that had been under a high-input and intensively irrigated rice cultivation system for more than 20 years. It was found that AMF colonization was mainly established in the heading and ripening stages. The AMF community structure was characterized in rhizosphere soils and roots from two of the studied paddy wetlands. A fragment covering the partial small subunit (SSU), the whole internal transcribed spacer (ITS), and the partial large subunit (LSU) rRNA operon regions of AMF was amplified, cloned, and sequenced from roots and soils. A total of 639 AMF sequences were obtained, and these were finally assigned to 16 phylotypes based on a phylogenetic analysis, including 12 phylotypes from Glomeraceae, one phylotype from Claroideoglomeraceae, two phylotypes from Paraglomeraceae, and one unidentified phylotype. The AMF phylotype compositions in the soils were similar between the two surveyed sites, but there was a clear discrepancy between the communities obtained from root and soil. The relatively high number of AMF phylotypes at the surveyed sites suggests that the conditions are suitable for some species of AMF and that they may have an important function in conventional rice cultivation systems. The species richness of root-colonizing AMF increased with the growth of rice, and future studies should consider the developmental stages of this crop in the exploration of AMF function in paddy wetlands.
DOI: 10.1128/AEM.03769-14
PubMed: 25681190
PubMed Central: PMC4375330
Links to Exploration step
pubmed:25681190Le document en format XML
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Li</name><affiliation><nlm:affiliation>Key Laboratory of Ecology and Environmental Science in Guangdong Higher Education, School of Life Sciences, South China Normal University, Guangzhou, China.</nlm:affiliation></affiliation></author><author><name sortKey="Bjorn, Lars Olof" sort="Bjorn, Lars Olof" uniqKey="Bjorn L" first="Lars Olof" last="Björn">Lars Olof Björn</name><affiliation><nlm:affiliation>Key Laboratory of Ecology and Environmental Science in Guangdong Higher Education, School of Life Sciences, South China Normal University, Guangzhou, China Department of Biology, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Rosendahl, S Ren" sort="Rosendahl, S Ren" uniqKey="Rosendahl S" first="S Ren" last="Rosendahl">S Ren Rosendahl</name><affiliation><nlm:affiliation>Department of Biology, University of Copenhagen, Copenhagen, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Olsson, P L Axel" sort="Olsson, P L Axel" 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Sciences, South China Normal University, Guangzhou, China.</nlm:affiliation></affiliation></author><author><name sortKey="Li, Yingwei" sort="Li, Yingwei" uniqKey="Li Y" first="Yingwei" last="Li">Yingwei Li</name><affiliation><nlm:affiliation>Key Laboratory of Ecology and Environmental Science in Guangdong Higher Education, School of Life Sciences, South China Normal University, Guangzhou, China.</nlm:affiliation></affiliation></author><author><name sortKey="Bjorn, Lars Olof" sort="Bjorn, Lars Olof" uniqKey="Bjorn L" first="Lars Olof" last="Björn">Lars Olof Björn</name><affiliation><nlm:affiliation>Key Laboratory of Ecology and Environmental Science in Guangdong Higher Education, School of Life Sciences, South China Normal University, Guangzhou, China Department of Biology, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Rosendahl, S Ren" sort="Rosendahl, S Ren" uniqKey="Rosendahl S" first="S Ren" last="Rosendahl">S Ren Rosendahl</name><affiliation><nlm:affiliation>Department of Biology, University of Copenhagen, Copenhagen, Denmark.</nlm:affiliation></affiliation></author><author><name sortKey="Olsson, P L Axel" sort="Olsson, P L Axel" uniqKey="Olsson P" first="P L Axel" last="Olsson">P L Axel Olsson</name><affiliation><nlm:affiliation>Department of Biology, Lund University, Lund, Sweden.</nlm:affiliation></affiliation></author><author><name sortKey="Li, Shaoshan" sort="Li, Shaoshan" uniqKey="Li S" first="Shaoshan" last="Li">Shaoshan Li</name><affiliation><nlm:affiliation>Key Laboratory of Ecology and Environmental Science in Guangdong Higher Education, School of Life Sciences, South China Normal University, Guangzhou, China lishsh@scnu.edu.cn.</nlm:affiliation></affiliation></author><author><name sortKey="Fu, Xuelin" sort="Fu, Xuelin" uniqKey="Fu X" first="Xuelin" last="Fu">Xuelin Fu</name><affiliation><nlm:affiliation>College of Agriculture, South China Agricultural University, Guangzhou, China.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Applied and environmental microbiology</title><idno type="eISSN">1098-5336</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Agriculture (methods)</term><term>DNA, Fungal (genetics)</term><term>DNA, Fungal (metabolism)</term><term>DNA, Intergenic (genetics)</term><term>DNA, Intergenic (metabolism)</term><term>Molecular Sequence Data (MeSH)</term><term>Mycorrhizae (classification)</term><term>Mycorrhizae (genetics)</term><term>Mycorrhizae (metabolism)</term><term>Oryza (growth & development)</term><term>Oryza (microbiology)</term><term>Phylogeny (MeSH)</term><term>Plant Roots (microbiology)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Soil Microbiology (MeSH)</term><term>Wetlands (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Fungal</term><term>DNA, Intergenic</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>DNA, Fungal</term><term>DNA, Intergenic</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Oryza</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Agriculture</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Oryza</term><term>Plant Roots</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term><term>Soil Microbiology</term><term>Wetlands</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Application of a mycorrhizal inoculum could be one way to increase the yield of rice plants and reduce the application of fertilizer. We therefore studied arbuscular mycorrhizal fungi (AMF) in the roots of wetland rice (Oryza sativa L.) collected at the seedling, tillering, heading, and ripening stages in four paddy wetlands that had been under a high-input and intensively irrigated rice cultivation system for more than 20 years. It was found that AMF colonization was mainly established in the heading and ripening stages. The AMF community structure was characterized in rhizosphere soils and roots from two of the studied paddy wetlands. A fragment covering the partial small subunit (SSU), the whole internal transcribed spacer (ITS), and the partial large subunit (LSU) rRNA operon regions of AMF was amplified, cloned, and sequenced from roots and soils. A total of 639 AMF sequences were obtained, and these were finally assigned to 16 phylotypes based on a phylogenetic analysis, including 12 phylotypes from Glomeraceae, one phylotype from Claroideoglomeraceae, two phylotypes from Paraglomeraceae, and one unidentified phylotype. The AMF phylotype compositions in the soils were similar between the two surveyed sites, but there was a clear discrepancy between the communities obtained from root and soil. The relatively high number of AMF phylotypes at the surveyed sites suggests that the conditions are suitable for some species of AMF and that they may have an important function in conventional rice cultivation systems. The species richness of root-colonizing AMF increased with the growth of rice, and future studies should consider the developmental stages of this crop in the exploration of AMF function in paddy wetlands. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25681190</PMID><DateCompleted><Year>2015</Year><Month>12</Month><Day>14</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1098-5336</ISSN><JournalIssue CitedMedium="Internet"><Volume>81</Volume><Issue>8</Issue><PubDate><Year>2015</Year><Month>Apr</Month></PubDate></JournalIssue><Title>Applied and environmental microbiology</Title><ISOAbbreviation>Appl Environ Microbiol</ISOAbbreviation></Journal><ArticleTitle>Community dynamics of arbuscular mycorrhizal fungi in high-input and intensively irrigated rice cultivation systems.</ArticleTitle><Pagination><MedlinePgn>2958-65</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1128/AEM.03769-14</ELocationID><Abstract><AbstractText>Application of a mycorrhizal inoculum could be one way to increase the yield of rice plants and reduce the application of fertilizer. We therefore studied arbuscular mycorrhizal fungi (AMF) in the roots of wetland rice (Oryza sativa L.) collected at the seedling, tillering, heading, and ripening stages in four paddy wetlands that had been under a high-input and intensively irrigated rice cultivation system for more than 20 years. It was found that AMF colonization was mainly established in the heading and ripening stages. The AMF community structure was characterized in rhizosphere soils and roots from two of the studied paddy wetlands. A fragment covering the partial small subunit (SSU), the whole internal transcribed spacer (ITS), and the partial large subunit (LSU) rRNA operon regions of AMF was amplified, cloned, and sequenced from roots and soils. A total of 639 AMF sequences were obtained, and these were finally assigned to 16 phylotypes based on a phylogenetic analysis, including 12 phylotypes from Glomeraceae, one phylotype from Claroideoglomeraceae, two phylotypes from Paraglomeraceae, and one unidentified phylotype. The AMF phylotype compositions in the soils were similar between the two surveyed sites, but there was a clear discrepancy between the communities obtained from root and soil. The relatively high number of AMF phylotypes at the surveyed sites suggests that the conditions are suitable for some species of AMF and that they may have an important function in conventional rice cultivation systems. The species richness of root-colonizing AMF increased with the growth of rice, and future studies should consider the developmental stages of this crop in the exploration of AMF function in paddy wetlands. </AbstractText><CopyrightInformation>Copyright © 2015, American Society for Microbiology. All Rights Reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Yutao</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Key Laboratory of Ecology and Environmental Science in Guangdong Higher Education, School of Life Sciences, South China Normal University, Guangzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Ting</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Key Laboratory of Ecology and Environmental Science in Guangdong Higher Education, School of Life Sciences, South China Normal University, Guangzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Yingwei</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Key Laboratory of Ecology and Environmental Science in Guangdong Higher Education, School of Life Sciences, South China Normal University, Guangzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Björn</LastName><ForeName>Lars Olof</ForeName><Initials>LO</Initials><AffiliationInfo><Affiliation>Key Laboratory of Ecology and Environmental Science in Guangdong Higher Education, School of Life Sciences, South China Normal University, Guangzhou, China Department of Biology, Lund University, Lund, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rosendahl</LastName><ForeName>Søren</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Copenhagen, Copenhagen, Denmark.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Olsson</LastName><ForeName>Pål Axel</ForeName><Initials>PA</Initials><AffiliationInfo><Affiliation>Department of Biology, Lund University, Lund, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Shaoshan</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Key Laboratory of Ecology and Environmental Science in Guangdong Higher Education, School of Life Sciences, South China Normal University, Guangzhou, China lishsh@scnu.edu.cn.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fu</LastName><ForeName>Xuelin</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>College of Agriculture, South China Agricultural University, Guangzhou, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><DataBankList 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