Early rhizosphere microbiome composition is related to the growth and Zn uptake of willows introduced to a former landfill.
Identifieur interne : 001454 ( Main/Corpus ); précédent : 001453; suivant : 001455Early rhizosphere microbiome composition is related to the growth and Zn uptake of willows introduced to a former landfill.
Auteurs : Terrence H. Bell ; Benoît Cloutier-Hurteau ; Fahad Al-Otaibi ; Marie-Claude Turmel ; Etienne Yergeau ; François Courchesne ; Marc St-ArnaudSource :
- Environmental microbiology [ 1462-2920 ] ; 2015.
English descriptors
- KwdEn :
- Ascomycota (classification), Ascomycota (genetics), Bacteria (classification), Bacteria (genetics), Base Sequence (MeSH), DNA, Bacterial (genetics), DNA, Fungal (genetics), Environmental Restoration and Remediation (methods), Microbiota (MeSH), Mycorrhizae (growth & development), Plant Roots (microbiology), RNA, Ribosomal, 16S (genetics), Rhizosphere (MeSH), Salix (growth & development), Salix (metabolism), Sequence Analysis, DNA (MeSH), Soil (chemistry), Soil Microbiology (MeSH), Soil Pollutants (metabolism), Trace Elements (metabolism), Waste Disposal Facilities (MeSH), Zinc (metabolism).
- MESH :
- chemical , chemistry : Soil.
- chemical , genetics : DNA, Bacterial, DNA, Fungal, RNA, Ribosomal, 16S.
- classification : Ascomycota, Bacteria.
- genetics : Ascomycota, Bacteria.
- growth & development : Mycorrhizae, Salix.
- metabolism : Salix, Soil Pollutants, Trace Elements, Zinc.
- methods : Environmental Restoration and Remediation.
- microbiology : Plant Roots.
- Base Sequence, Microbiota, Rhizosphere, Sequence Analysis, DNA, Soil Microbiology, Waste Disposal Facilities.
Abstract
Although plants introduced for site restoration are pre-selected for specific traits (e.g. trace element bioaccumulation, rapid growth in poor soils), the in situ success of these plants likely depends on the recruitment of appropriate rhizosphere microorganisms from their new environment. We introduced three willow (Salix spp.) cultivars to a contaminated landfill, and performed soil chemical analyses, plant measurements, and Ion Torrent sequencing of rhizospheric fungal and bacterial communities at 4 and 16 months post-planting. The abundance of certain dominant fungi was linked to willow accumulation of Zn, the most abundant trace element at the site. Interestingly, total Zn accumulation was better explained by fungal community structure 4 months post-planting than 16 months post-planting, suggesting that initial microbial recruitment may be critical. In addition, when the putative ectomycorrhizal fungi Sphaerosporella brunnea and Inocybe sp. dominated the rhizosphere 4 months post-planting, Zn accumulation efficiency was negatively correlated with fungal diversity. Although field studies such as this rely on correlation, these results suggest that the soil microbiome may have the greatest impact on plant function during the early stages of growth, and that plant-fungus specificity may be essential.
DOI: 10.1111/1462-2920.12900
PubMed: 25970820
Links to Exploration step
pubmed:25970820Le document en format XML
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Bell</name><affiliation><nlm:affiliation>Biodiversity Centre, Institut de Recherche en Biologie Végétale, Université de Montréal and Jardin botanique de Montréal, Montréal, QC, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Cloutier Hurteau, Benoit" sort="Cloutier Hurteau, Benoit" uniqKey="Cloutier Hurteau B" first="Benoît" last="Cloutier-Hurteau">Benoît Cloutier-Hurteau</name><affiliation><nlm:affiliation>Département de Géographie, Université de Montréal, Montréal, QC, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Al Otaibi, Fahad" sort="Al Otaibi, Fahad" uniqKey="Al Otaibi F" first="Fahad" last="Al-Otaibi">Fahad Al-Otaibi</name><affiliation><nlm:affiliation>Biodiversity Centre, Institut de Recherche en Biologie Végétale, Université de Montréal and Jardin botanique de Montréal, Montréal, QC, Canada.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Soil Science, King Saud University, Riyadh, Saudi Arabia.</nlm:affiliation></affiliation></author><author><name sortKey="Turmel, Marie Claude" sort="Turmel, Marie Claude" uniqKey="Turmel M" first="Marie-Claude" last="Turmel">Marie-Claude Turmel</name><affiliation><nlm:affiliation>Département de Géographie, Université de Montréal, Montréal, QC, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Yergeau, Etienne" sort="Yergeau, Etienne" uniqKey="Yergeau E" first="Etienne" last="Yergeau">Etienne Yergeau</name><affiliation><nlm:affiliation>Energy, Mining and Environment, National Research Council Canada, Montréal, QC, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Courchesne, Francois" sort="Courchesne, Francois" uniqKey="Courchesne F" first="François" last="Courchesne">François Courchesne</name><affiliation><nlm:affiliation>Département de Géographie, Université de Montréal, Montréal, QC, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="St Arnaud, Marc" sort="St Arnaud, Marc" uniqKey="St Arnaud M" first="Marc" last="St-Arnaud">Marc St-Arnaud</name><affiliation><nlm:affiliation>Biodiversity Centre, Institut de Recherche en Biologie Végétale, Université de Montréal and Jardin botanique de Montréal, Montréal, QC, Canada.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2015">2015</date><idno type="RBID">pubmed:25970820</idno><idno type="pmid">25970820</idno><idno type="doi">10.1111/1462-2920.12900</idno><idno type="wicri:Area/Main/Corpus">001454</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001454</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Early rhizosphere microbiome composition is related to the growth and Zn uptake of willows introduced to a former landfill.</title><author><name sortKey="Bell, Terrence H" sort="Bell, Terrence H" uniqKey="Bell T" first="Terrence H" last="Bell">Terrence H. Bell</name><affiliation><nlm:affiliation>Biodiversity Centre, Institut de Recherche en Biologie Végétale, Université de Montréal and Jardin botanique de Montréal, Montréal, QC, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Cloutier Hurteau, Benoit" sort="Cloutier Hurteau, Benoit" uniqKey="Cloutier Hurteau B" first="Benoît" last="Cloutier-Hurteau">Benoît Cloutier-Hurteau</name><affiliation><nlm:affiliation>Département de Géographie, Université de Montréal, Montréal, QC, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Al Otaibi, Fahad" sort="Al Otaibi, Fahad" uniqKey="Al Otaibi F" first="Fahad" last="Al-Otaibi">Fahad Al-Otaibi</name><affiliation><nlm:affiliation>Biodiversity Centre, Institut de Recherche en Biologie Végétale, Université de Montréal and Jardin botanique de Montréal, Montréal, QC, Canada.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Soil Science, King Saud University, Riyadh, Saudi Arabia.</nlm:affiliation></affiliation></author><author><name sortKey="Turmel, Marie Claude" sort="Turmel, Marie Claude" uniqKey="Turmel M" first="Marie-Claude" last="Turmel">Marie-Claude Turmel</name><affiliation><nlm:affiliation>Département de Géographie, Université de Montréal, Montréal, QC, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Yergeau, Etienne" sort="Yergeau, Etienne" uniqKey="Yergeau E" first="Etienne" last="Yergeau">Etienne Yergeau</name><affiliation><nlm:affiliation>Energy, Mining and Environment, National Research Council Canada, Montréal, QC, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Courchesne, Francois" sort="Courchesne, Francois" uniqKey="Courchesne F" first="François" last="Courchesne">François Courchesne</name><affiliation><nlm:affiliation>Département de Géographie, Université de Montréal, Montréal, QC, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="St Arnaud, Marc" sort="St Arnaud, Marc" uniqKey="St Arnaud M" first="Marc" last="St-Arnaud">Marc St-Arnaud</name><affiliation><nlm:affiliation>Biodiversity Centre, Institut de Recherche en Biologie Végétale, Université de Montréal and Jardin botanique de Montréal, Montréal, QC, Canada.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Environmental microbiology</title><idno type="eISSN">1462-2920</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Ascomycota (classification)</term><term>Ascomycota (genetics)</term><term>Bacteria (classification)</term><term>Bacteria (genetics)</term><term>Base Sequence (MeSH)</term><term>DNA, Bacterial (genetics)</term><term>DNA, Fungal (genetics)</term><term>Environmental Restoration and Remediation (methods)</term><term>Microbiota (MeSH)</term><term>Mycorrhizae (growth & development)</term><term>Plant Roots (microbiology)</term><term>RNA, Ribosomal, 16S (genetics)</term><term>Rhizosphere (MeSH)</term><term>Salix (growth & development)</term><term>Salix (metabolism)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Soil (chemistry)</term><term>Soil Microbiology (MeSH)</term><term>Soil Pollutants (metabolism)</term><term>Trace Elements (metabolism)</term><term>Waste Disposal Facilities (MeSH)</term><term>Zinc (metabolism)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Soil</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Bacterial</term><term>DNA, Fungal</term><term>RNA, Ribosomal, 16S</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Ascomycota</term><term>Bacteria</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Ascomycota</term><term>Bacteria</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Mycorrhizae</term><term>Salix</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Salix</term><term>Soil Pollutants</term><term>Trace Elements</term><term>Zinc</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Environmental Restoration and Remediation</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Roots</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Microbiota</term><term>Rhizosphere</term><term>Sequence Analysis, DNA</term><term>Soil Microbiology</term><term>Waste Disposal Facilities</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Although plants introduced for site restoration are pre-selected for specific traits (e.g. trace element bioaccumulation, rapid growth in poor soils), the in situ success of these plants likely depends on the recruitment of appropriate rhizosphere microorganisms from their new environment. We introduced three willow (Salix spp.) cultivars to a contaminated landfill, and performed soil chemical analyses, plant measurements, and Ion Torrent sequencing of rhizospheric fungal and bacterial communities at 4 and 16 months post-planting. The abundance of certain dominant fungi was linked to willow accumulation of Zn, the most abundant trace element at the site. Interestingly, total Zn accumulation was better explained by fungal community structure 4 months post-planting than 16 months post-planting, suggesting that initial microbial recruitment may be critical. In addition, when the putative ectomycorrhizal fungi Sphaerosporella brunnea and Inocybe sp. dominated the rhizosphere 4 months post-planting, Zn accumulation efficiency was negatively correlated with fungal diversity. Although field studies such as this rely on correlation, these results suggest that the soil microbiome may have the greatest impact on plant function during the early stages of growth, and that plant-fungus specificity may be essential. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">25970820</PMID><DateCompleted><Year>2016</Year><Month>04</Month><Day>21</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>02</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1462-2920</ISSN><JournalIssue CitedMedium="Internet"><Volume>17</Volume><Issue>8</Issue><PubDate><Year>2015</Year><Month>Aug</Month></PubDate></JournalIssue><Title>Environmental microbiology</Title><ISOAbbreviation>Environ Microbiol</ISOAbbreviation></Journal><ArticleTitle>Early rhizosphere microbiome composition is related to the growth and Zn uptake of willows introduced to a former landfill.</ArticleTitle><Pagination><MedlinePgn>3025-38</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/1462-2920.12900</ELocationID><Abstract><AbstractText>Although plants introduced for site restoration are pre-selected for specific traits (e.g. trace element bioaccumulation, rapid growth in poor soils), the in situ success of these plants likely depends on the recruitment of appropriate rhizosphere microorganisms from their new environment. We introduced three willow (Salix spp.) cultivars to a contaminated landfill, and performed soil chemical analyses, plant measurements, and Ion Torrent sequencing of rhizospheric fungal and bacterial communities at 4 and 16 months post-planting. The abundance of certain dominant fungi was linked to willow accumulation of Zn, the most abundant trace element at the site. Interestingly, total Zn accumulation was better explained by fungal community structure 4 months post-planting than 16 months post-planting, suggesting that initial microbial recruitment may be critical. In addition, when the putative ectomycorrhizal fungi Sphaerosporella brunnea and Inocybe sp. dominated the rhizosphere 4 months post-planting, Zn accumulation efficiency was negatively correlated with fungal diversity. Although field studies such as this rely on correlation, these results suggest that the soil microbiome may have the greatest impact on plant function during the early stages of growth, and that plant-fungus specificity may be essential. </AbstractText><CopyrightInformation>© 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bell</LastName><ForeName>Terrence H</ForeName><Initials>TH</Initials><AffiliationInfo><Affiliation>Biodiversity Centre, Institut de Recherche en Biologie Végétale, Université de Montréal and Jardin botanique de Montréal, Montréal, QC, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cloutier-Hurteau</LastName><ForeName>Benoît</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Département de Géographie, Université de Montréal, Montréal, QC, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Al-Otaibi</LastName><ForeName>Fahad</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Biodiversity Centre, Institut de Recherche en Biologie Végétale, Université de Montréal and Jardin botanique de Montréal, Montréal, QC, Canada.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Soil Science, King Saud University, Riyadh, Saudi Arabia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Turmel</LastName><ForeName>Marie-Claude</ForeName><Initials>MC</Initials><AffiliationInfo><Affiliation>Département de Géographie, Université de Montréal, Montréal, QC, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yergeau</LastName><ForeName>Etienne</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Energy, Mining and Environment, National Research Council Canada, Montréal, QC, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Courchesne</LastName><ForeName>François</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Département de Géographie, Université de Montréal, Montréal, QC, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>St-Arnaud</LastName><ForeName>Marc</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Biodiversity Centre, Institut de Recherche en Biologie Végétale, Université de Montréal and Jardin botanique de Montréal, Montréal, QC, Canada.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>06</Month><Day>19</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Environ Microbiol</MedlineTA><NlmUniqueID>100883692</NlmUniqueID><ISSNLinking>1462-2912</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012987">Soil</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012989">Soil Pollutants</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014131">Trace Elements</NameOfSubstance></Chemical><Chemical><RegistryNumber>J41CSQ7QDS</RegistryNumber><NameOfSubstance UI="D015032">Zinc</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001203" MajorTopicYN="N">Ascomycota</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001419" MajorTopicYN="N">Bacteria</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName><QualifierName UI="Q000235" 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MajorTopicYN="Y">Rhizosphere</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032108" MajorTopicYN="N">Salix</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012987" MajorTopicYN="N">Soil</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012989" MajorTopicYN="N">Soil Pollutants</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014131" MajorTopicYN="N">Trace Elements</DescriptorName><QualifierName UI="Q000378" 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