Arbuscular mycorrhizal fungi community structure, abundance and species richness changes in soil by different levels of heavy metal and metalloid concentration.
Identifieur interne : 001436 ( Main/Corpus ); précédent : 001435; suivant : 001437Arbuscular mycorrhizal fungi community structure, abundance and species richness changes in soil by different levels of heavy metal and metalloid concentration.
Auteurs : Ramasamy Krishnamoorthy ; Chang-Gi Kim ; Parthiban Subramanian ; Ki-Yoon Kim ; Gopal Selvakumar ; Tong-Min SaSource :
- PloS one [ 1932-6203 ] ; 2015.
English descriptors
- KwdEn :
- Biodiversity (MeSH), Denaturing Gradient Gel Electrophoresis (MeSH), Metalloids (analysis), Metals, Heavy (analysis), Mycorrhizae (classification), Mycorrhizae (genetics), Mycorrhizae (physiology), Polymorphism, Restriction Fragment Length (MeSH), Population Density (MeSH), Republic of Korea (MeSH), Soil Microbiology (MeSH), Soil Pollutants (analysis).
- MESH :
- chemical , analysis : Metalloids, Metals, Heavy, Soil Pollutants.
- geographic : Republic of Korea.
- classification : Mycorrhizae.
- genetics : Mycorrhizae.
- physiology : Mycorrhizae.
- Biodiversity, Denaturing Gradient Gel Electrophoresis, Polymorphism, Restriction Fragment Length, Population Density, Soil Microbiology.
Abstract
Arbuscular Mycorrhizal Fungi (AMF) play major roles in ecosystem functioning such as carbon sequestration, nutrient cycling, and plant growth promotion. It is important to know how this ecologically important soil microbial player is affected by soil abiotic factors particularly heavy metal and metalloid (HMM). The objective of this study was to understand the impact of soil HMM concentration on AMF abundance and community structure in the contaminated sites of South Korea. Soil samples were collected from the vicinity of an abandoned smelter and the samples were subjected to three complementary methods such as spore morphology, terminal restriction fragment length polymorphism (T-RFLP) and denaturing gradient gel electrophoresis (DGGE) for diversity analysis. Spore density was found to be significantly higher in highly contaminated soil compared to less contaminated soil. Spore morphological study revealed that Glomeraceae family was more abundant followed by Acaulosporaceae and Gigasporaceae in the vicinity of the smelter. T-RFLP and DGGE analysis confirmed the dominance of Funneliformis mosseae and Rhizophagus intraradices in all the study sites. Claroideoglomus claroideum, Funneliformis caledonium, Rhizophagus clarus and Funneliformis constrictum were found to be sensitive to high concentration of soil HMM. Richness and diversity of Glomeraceae family increased with significant increase in soil arsenic, cadmium and zinc concentrations. Our results revealed that the soil HMM has a vital impact on AMF community structure, especially with Glomeraceae family abundance, richness and diversity.
DOI: 10.1371/journal.pone.0128784
PubMed: 26035444
PubMed Central: PMC4452772
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uniqKey="Subramanian P" first="Parthiban" last="Subramanian">Parthiban Subramanian</name><affiliation><nlm:affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Kim, Ki Yoon" sort="Kim, Ki Yoon" uniqKey="Kim K" first="Ki-Yoon" last="Kim">Ki-Yoon Kim</name><affiliation><nlm:affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Selvakumar, Gopal" sort="Selvakumar, Gopal" uniqKey="Selvakumar G" first="Gopal" last="Selvakumar">Gopal Selvakumar</name><affiliation><nlm:affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Sa, Tong Min" sort="Sa, Tong Min" uniqKey="Sa 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first="Ramasamy" last="Krishnamoorthy">Ramasamy Krishnamoorthy</name><affiliation><nlm:affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Kim, Chang Gi" sort="Kim, Chang Gi" uniqKey="Kim C" first="Chang-Gi" last="Kim">Chang-Gi Kim</name><affiliation><nlm:affiliation>Bio-Evaluation Center, Korea Research Institute of Bioscience and Biotechnology, Cheongwon, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Subramanian, Parthiban" sort="Subramanian, Parthiban" uniqKey="Subramanian P" first="Parthiban" last="Subramanian">Parthiban Subramanian</name><affiliation><nlm:affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Kim, Ki Yoon" sort="Kim, Ki Yoon" uniqKey="Kim K" first="Ki-Yoon" last="Kim">Ki-Yoon Kim</name><affiliation><nlm:affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Selvakumar, Gopal" sort="Selvakumar, Gopal" uniqKey="Selvakumar G" first="Gopal" last="Selvakumar">Gopal Selvakumar</name><affiliation><nlm:affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Sa, Tong Min" sort="Sa, Tong Min" uniqKey="Sa T" first="Tong-Min" last="Sa">Tong-Min Sa</name><affiliation><nlm:affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</nlm:affiliation></affiliation></author></analytic><series><title level="j">PloS one</title><idno type="eISSN">1932-6203</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Biodiversity (MeSH)</term><term>Denaturing Gradient Gel Electrophoresis (MeSH)</term><term>Metalloids (analysis)</term><term>Metals, Heavy (analysis)</term><term>Mycorrhizae (classification)</term><term>Mycorrhizae (genetics)</term><term>Mycorrhizae (physiology)</term><term>Polymorphism, Restriction Fragment Length (MeSH)</term><term>Population Density (MeSH)</term><term>Republic of Korea (MeSH)</term><term>Soil Microbiology (MeSH)</term><term>Soil Pollutants (analysis)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>Metalloids</term><term>Metals, Heavy</term><term>Soil Pollutants</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Republic of Korea</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biodiversity</term><term>Denaturing Gradient Gel Electrophoresis</term><term>Polymorphism, Restriction Fragment Length</term><term>Population Density</term><term>Soil Microbiology</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Arbuscular Mycorrhizal Fungi (AMF) play major roles in ecosystem functioning such as carbon sequestration, nutrient cycling, and plant growth promotion. It is important to know how this ecologically important soil microbial player is affected by soil abiotic factors particularly heavy metal and metalloid (HMM). The objective of this study was to understand the impact of soil HMM concentration on AMF abundance and community structure in the contaminated sites of South Korea. Soil samples were collected from the vicinity of an abandoned smelter and the samples were subjected to three complementary methods such as spore morphology, terminal restriction fragment length polymorphism (T-RFLP) and denaturing gradient gel electrophoresis (DGGE) for diversity analysis. Spore density was found to be significantly higher in highly contaminated soil compared to less contaminated soil. Spore morphological study revealed that Glomeraceae family was more abundant followed by Acaulosporaceae and Gigasporaceae in the vicinity of the smelter. T-RFLP and DGGE analysis confirmed the dominance of Funneliformis mosseae and Rhizophagus intraradices in all the study sites. Claroideoglomus claroideum, Funneliformis caledonium, Rhizophagus clarus and Funneliformis constrictum were found to be sensitive to high concentration of soil HMM. Richness and diversity of Glomeraceae family increased with significant increase in soil arsenic, cadmium and zinc concentrations. Our results revealed that the soil HMM has a vital impact on AMF community structure, especially with Glomeraceae family abundance, richness and diversity. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26035444</PMID><DateCompleted><Year>2016</Year><Month>05</Month><Day>05</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN><JournalIssue CitedMedium="Internet"><Volume>10</Volume><Issue>6</Issue><PubDate><Year>2015</Year></PubDate></JournalIssue><Title>PloS one</Title><ISOAbbreviation>PLoS One</ISOAbbreviation></Journal><ArticleTitle>Arbuscular mycorrhizal fungi community structure, abundance and species richness changes in soil by different levels of heavy metal and metalloid concentration.</ArticleTitle><Pagination><MedlinePgn>e0128784</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0128784</ELocationID><Abstract><AbstractText>Arbuscular Mycorrhizal Fungi (AMF) play major roles in ecosystem functioning such as carbon sequestration, nutrient cycling, and plant growth promotion. It is important to know how this ecologically important soil microbial player is affected by soil abiotic factors particularly heavy metal and metalloid (HMM). The objective of this study was to understand the impact of soil HMM concentration on AMF abundance and community structure in the contaminated sites of South Korea. Soil samples were collected from the vicinity of an abandoned smelter and the samples were subjected to three complementary methods such as spore morphology, terminal restriction fragment length polymorphism (T-RFLP) and denaturing gradient gel electrophoresis (DGGE) for diversity analysis. Spore density was found to be significantly higher in highly contaminated soil compared to less contaminated soil. Spore morphological study revealed that Glomeraceae family was more abundant followed by Acaulosporaceae and Gigasporaceae in the vicinity of the smelter. T-RFLP and DGGE analysis confirmed the dominance of Funneliformis mosseae and Rhizophagus intraradices in all the study sites. Claroideoglomus claroideum, Funneliformis caledonium, Rhizophagus clarus and Funneliformis constrictum were found to be sensitive to high concentration of soil HMM. Richness and diversity of Glomeraceae family increased with significant increase in soil arsenic, cadmium and zinc concentrations. Our results revealed that the soil HMM has a vital impact on AMF community structure, especially with Glomeraceae family abundance, richness and diversity. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Krishnamoorthy</LastName><ForeName>Ramasamy</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Chang-Gi</ForeName><Initials>CG</Initials><AffiliationInfo><Affiliation>Bio-Evaluation Center, Korea Research Institute of Bioscience and Biotechnology, Cheongwon, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Subramanian</LastName><ForeName>Parthiban</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Ki-Yoon</ForeName><Initials>KY</Initials><AffiliationInfo><Affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Selvakumar</LastName><ForeName>Gopal</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sa</LastName><ForeName>Tong-Min</ForeName><Initials>TM</Initials><AffiliationInfo><Affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>06</Month><Day>02</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>PLoS One</MedlineTA><NlmUniqueID>101285081</NlmUniqueID><ISSNLinking>1932-6203</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D058955">Metalloids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D019216">Metals, Heavy</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012989">Soil 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