Diversity of Arbuscular Mycorrhizal Fungi in a Brazilian Atlantic Forest Toposequence.
Identifieur interne : 001352 ( Main/Corpus ); précédent : 001351; suivant : 001353Diversity of Arbuscular Mycorrhizal Fungi in a Brazilian Atlantic Forest Toposequence.
Auteurs : Joice Andrade Bonfim ; Rafael Leandro Figueiredo Vasconcellos ; Thiago Gumiere ; Denise De Lourdes Colombo Mescolotti ; Fritz Oehl ; Elke Jurandy Bran Nogueira CardosoSource :
- Microbial ecology [ 1432-184X ] ; 2016.
English descriptors
- KwdEn :
- Altitude (MeSH), Biodiversity (MeSH), Brazil (MeSH), Forests (MeSH), Fungi (classification), Fungi (genetics), Fungi (isolation & purification), Molecular Sequence Data (MeSH), Mycorrhizae (classification), Mycorrhizae (genetics), Mycorrhizae (isolation & purification), Phylogeny (MeSH), Plant Roots (microbiology), Rhizosphere (MeSH), Seasons (MeSH), Soil Microbiology (MeSH).
- MESH :
- classification : Fungi, Mycorrhizae.
- genetics : Fungi, Mycorrhizae.
- isolation & purification : Fungi, Mycorrhizae.
- microbiology : Plant Roots.
- Altitude, Biodiversity, Brazil, Forests, Molecular Sequence Data, Phylogeny, Rhizosphere, Seasons, Soil Microbiology.
Abstract
The diversity of arbuscular mycorrhizal fungi (AMF) was studied in the Atlantic Forest in Serra do Mar Park (SE Brazil), based on seven host plants in relationship to their soil environment, altitude and seasonality. The studied plots along an elevation gradient are located at 80, 600, and 1,000 m. Soil samples (0-20 cm) were collected in four seasons from SE Brazilian winter 2012 to autumn 2013. AMF spores in rhizosperic soils were morphologically classified and chemical, physical and microbiological soil caracteristics were determined. AMF diversity in roots was evaluated using the NS31/AM1 primer pair, with subsequent cloning and sequencing. In the rhizosphere, 58 AMF species were identified. The genera Acaulospora and Glomus were predominant. However, in the roots, only 14 AMF sequencing groups were found and all had high similarity to Glomeraceae. AMF species identities varied between altitudes and seasons. There were species that contributed the most to this variation. Some soil characteristics (pH, organic matter, microbial activity and microbial biomass carbon) showed a strong relationship with the occurrence of certain species. The highest AMF species diversity, based on Shannon's diversity index, was found for the highest altitude. Seasonality did not affect the diversity. Our results show a high AMF diversity, higher than commonly found in the Atlantic Forest. The AMF detected in roots were not identical to those detected in rhizosperic soil and differences in AMF communities were found in different altitudes even in geographically close-lying sites.
DOI: 10.1007/s00248-015-0661-0
PubMed: 26304552
Links to Exploration step
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rafaellfvasc@gmail.com.</nlm:affiliation></affiliation></author><author><name sortKey="Gumiere, Thiago" sort="Gumiere, Thiago" uniqKey="Gumiere T" first="Thiago" last="Gumiere">Thiago Gumiere</name><affiliation><nlm:affiliation>Soil Science Department, Soil Microbiology Lab, University of São Paulo, ESALQ, Pádua Dias Ave, no. 11, CEP 13418-900, Piracicaba, SP, Brazil.</nlm:affiliation></affiliation></author><author><name sortKey="De Lourdes Colombo Mescolotti, Denise" sort="De Lourdes Colombo Mescolotti, Denise" uniqKey="De Lourdes Colombo Mescolotti D" first="Denise" last="De Lourdes Colombo Mescolotti">Denise De Lourdes Colombo Mescolotti</name><affiliation><nlm:affiliation>Soil Science Department, Soil Microbiology Lab, University of São Paulo, ESALQ, Pádua Dias Ave, no. 11, CEP 13418-900, Piracicaba, SP, Brazil.</nlm:affiliation></affiliation></author><author><name sortKey="Oehl, Fritz" sort="Oehl, Fritz" uniqKey="Oehl F" first="Fritz" last="Oehl">Fritz Oehl</name><affiliation><nlm:affiliation>Agroscope, Federal Research Institute for Sustainability Sciences, Plant-Soil-Interactions, Reckenholzstrasse 191, CH-8046, Zürich, Switzerland. fritz.oehl@agroscope.admin.ch.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Departamento de Micologia, Universidade Federal de Pernambuco, Avenida da Engenharia s/n, CEP 50740-600, Recife, Brazil. fritz.oehl@agroscope.admin.ch.</nlm:affiliation></affiliation></author><author><name sortKey="Nogueira Cardoso, Elke Jurandy Bran" sort="Nogueira Cardoso, Elke Jurandy Bran" uniqKey="Nogueira Cardoso E" first="Elke Jurandy Bran" last="Nogueira Cardoso">Elke Jurandy Bran Nogueira Cardoso</name><affiliation><nlm:affiliation>Soil Science Department, Soil Microbiology Lab, University of São Paulo, ESALQ, Pádua Dias Ave, no. 11, CEP 13418-900, Piracicaba, SP, Brazil. ejbncard@usp.br.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2016">2016</date><idno type="RBID">pubmed:26304552</idno><idno type="pmid">26304552</idno><idno type="doi">10.1007/s00248-015-0661-0</idno><idno type="wicri:Area/Main/Corpus">001352</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001352</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Diversity of Arbuscular Mycorrhizal Fungi in a Brazilian Atlantic Forest Toposequence.</title><author><name sortKey="Bonfim, Joice Andrade" sort="Bonfim, Joice Andrade" uniqKey="Bonfim J" first="Joice Andrade" last="Bonfim">Joice Andrade Bonfim</name><affiliation><nlm:affiliation>Soil Science Department, Soil Microbiology Lab, University of São Paulo, ESALQ, Pádua Dias Ave, no. 11, CEP 13418-900, Piracicaba, SP, Brazil. joice.agro@yahoo.com.br.</nlm:affiliation></affiliation></author><author><name sortKey="Vasconcellos, Rafael Leandro Figueiredo" sort="Vasconcellos, Rafael Leandro Figueiredo" uniqKey="Vasconcellos R" first="Rafael Leandro Figueiredo" last="Vasconcellos">Rafael Leandro Figueiredo Vasconcellos</name><affiliation><nlm:affiliation>EMBRAPA (Brazilian Company for Research in Agriculture, Husbandry and Environment), 340, Highway, km 127.5, CEP 13820-000, Jaguariuna, SP, Brazil. rafaellfvasc@gmail.com.</nlm:affiliation></affiliation></author><author><name sortKey="Gumiere, Thiago" sort="Gumiere, Thiago" uniqKey="Gumiere T" first="Thiago" last="Gumiere">Thiago Gumiere</name><affiliation><nlm:affiliation>Soil Science Department, Soil Microbiology Lab, University of São Paulo, ESALQ, Pádua Dias Ave, no. 11, CEP 13418-900, Piracicaba, SP, Brazil.</nlm:affiliation></affiliation></author><author><name sortKey="De Lourdes Colombo Mescolotti, Denise" sort="De Lourdes Colombo Mescolotti, Denise" uniqKey="De Lourdes Colombo Mescolotti D" first="Denise" last="De Lourdes Colombo Mescolotti">Denise De Lourdes Colombo Mescolotti</name><affiliation><nlm:affiliation>Soil Science Department, Soil Microbiology Lab, University of São Paulo, ESALQ, Pádua Dias Ave, no. 11, CEP 13418-900, Piracicaba, SP, Brazil.</nlm:affiliation></affiliation></author><author><name sortKey="Oehl, Fritz" sort="Oehl, Fritz" uniqKey="Oehl F" first="Fritz" last="Oehl">Fritz Oehl</name><affiliation><nlm:affiliation>Agroscope, Federal Research Institute for Sustainability Sciences, Plant-Soil-Interactions, Reckenholzstrasse 191, CH-8046, Zürich, Switzerland. fritz.oehl@agroscope.admin.ch.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Departamento de Micologia, Universidade Federal de Pernambuco, Avenida da Engenharia s/n, CEP 50740-600, Recife, Brazil. fritz.oehl@agroscope.admin.ch.</nlm:affiliation></affiliation></author><author><name sortKey="Nogueira Cardoso, Elke Jurandy Bran" sort="Nogueira Cardoso, Elke Jurandy Bran" uniqKey="Nogueira Cardoso E" first="Elke Jurandy Bran" last="Nogueira Cardoso">Elke Jurandy Bran Nogueira Cardoso</name><affiliation><nlm:affiliation>Soil Science Department, Soil Microbiology Lab, University of São Paulo, ESALQ, Pádua Dias Ave, no. 11, CEP 13418-900, Piracicaba, SP, Brazil. ejbncard@usp.br.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Microbial ecology</title><idno type="eISSN">1432-184X</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Altitude (MeSH)</term><term>Biodiversity (MeSH)</term><term>Brazil (MeSH)</term><term>Forests (MeSH)</term><term>Fungi (classification)</term><term>Fungi (genetics)</term><term>Fungi (isolation & purification)</term><term>Molecular Sequence Data (MeSH)</term><term>Mycorrhizae (classification)</term><term>Mycorrhizae (genetics)</term><term>Mycorrhizae (isolation & purification)</term><term>Phylogeny (MeSH)</term><term>Plant Roots (microbiology)</term><term>Rhizosphere (MeSH)</term><term>Seasons (MeSH)</term><term>Soil Microbiology (MeSH)</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Fungi</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Fungi</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Fungi</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Roots</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Altitude</term><term>Biodiversity</term><term>Brazil</term><term>Forests</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Rhizosphere</term><term>Seasons</term><term>Soil Microbiology</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The diversity of arbuscular mycorrhizal fungi (AMF) was studied in the Atlantic Forest in Serra do Mar Park (SE Brazil), based on seven host plants in relationship to their soil environment, altitude and seasonality. The studied plots along an elevation gradient are located at 80, 600, and 1,000 m. Soil samples (0-20 cm) were collected in four seasons from SE Brazilian winter 2012 to autumn 2013. AMF spores in rhizosperic soils were morphologically classified and chemical, physical and microbiological soil caracteristics were determined. AMF diversity in roots was evaluated using the NS31/AM1 primer pair, with subsequent cloning and sequencing. In the rhizosphere, 58 AMF species were identified. The genera Acaulospora and Glomus were predominant. However, in the roots, only 14 AMF sequencing groups were found and all had high similarity to Glomeraceae. AMF species identities varied between altitudes and seasons. There were species that contributed the most to this variation. Some soil characteristics (pH, organic matter, microbial activity and microbial biomass carbon) showed a strong relationship with the occurrence of certain species. The highest AMF species diversity, based on Shannon's diversity index, was found for the highest altitude. Seasonality did not affect the diversity. Our results show a high AMF diversity, higher than commonly found in the Atlantic Forest. The AMF detected in roots were not identical to those detected in rhizosperic soil and differences in AMF communities were found in different altitudes even in geographically close-lying sites. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26304552</PMID><DateCompleted><Year>2016</Year><Month>10</Month><Day>05</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-184X</ISSN><JournalIssue CitedMedium="Internet"><Volume>71</Volume><Issue>1</Issue><PubDate><Year>2016</Year><Month>Jan</Month></PubDate></JournalIssue><Title>Microbial ecology</Title><ISOAbbreviation>Microb Ecol</ISOAbbreviation></Journal><ArticleTitle>Diversity of Arbuscular Mycorrhizal Fungi in a Brazilian Atlantic Forest Toposequence.</ArticleTitle><Pagination><MedlinePgn>164-77</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00248-015-0661-0</ELocationID><Abstract><AbstractText>The diversity of arbuscular mycorrhizal fungi (AMF) was studied in the Atlantic Forest in Serra do Mar Park (SE Brazil), based on seven host plants in relationship to their soil environment, altitude and seasonality. The studied plots along an elevation gradient are located at 80, 600, and 1,000 m. Soil samples (0-20 cm) were collected in four seasons from SE Brazilian winter 2012 to autumn 2013. AMF spores in rhizosperic soils were morphologically classified and chemical, physical and microbiological soil caracteristics were determined. AMF diversity in roots was evaluated using the NS31/AM1 primer pair, with subsequent cloning and sequencing. In the rhizosphere, 58 AMF species were identified. The genera Acaulospora and Glomus were predominant. However, in the roots, only 14 AMF sequencing groups were found and all had high similarity to Glomeraceae. AMF species identities varied between altitudes and seasons. There were species that contributed the most to this variation. Some soil characteristics (pH, organic matter, microbial activity and microbial biomass carbon) showed a strong relationship with the occurrence of certain species. The highest AMF species diversity, based on Shannon's diversity index, was found for the highest altitude. Seasonality did not affect the diversity. Our results show a high AMF diversity, higher than commonly found in the Atlantic Forest. The AMF detected in roots were not identical to those detected in rhizosperic soil and differences in AMF communities were found in different altitudes even in geographically close-lying sites. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bonfim</LastName><ForeName>Joice Andrade</ForeName><Initials>JA</Initials><AffiliationInfo><Affiliation>Soil Science Department, Soil Microbiology Lab, University of São Paulo, ESALQ, Pádua Dias Ave, no. 11, CEP 13418-900, Piracicaba, SP, Brazil. joice.agro@yahoo.com.br.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vasconcellos</LastName><ForeName>Rafael Leandro Figueiredo</ForeName><Initials>RL</Initials><AffiliationInfo><Affiliation>EMBRAPA (Brazilian Company for Research in Agriculture, Husbandry and Environment), 340, Highway, km 127.5, CEP 13820-000, Jaguariuna, SP, Brazil. rafaellfvasc@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gumiere</LastName><ForeName>Thiago</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Soil Science Department, Soil Microbiology Lab, University of São Paulo, ESALQ, Pádua Dias Ave, no. 11, CEP 13418-900, Piracicaba, SP, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>de Lourdes Colombo Mescolotti</LastName><ForeName>Denise</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Soil Science Department, Soil Microbiology Lab, University of São Paulo, ESALQ, Pádua Dias Ave, no. 11, CEP 13418-900, Piracicaba, SP, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Oehl</LastName><ForeName>Fritz</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Agroscope, Federal Research Institute for Sustainability Sciences, Plant-Soil-Interactions, Reckenholzstrasse 191, CH-8046, Zürich, Switzerland. fritz.oehl@agroscope.admin.ch.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Departamento de Micologia, Universidade Federal de Pernambuco, Avenida da Engenharia s/n, CEP 50740-600, Recife, Brazil. fritz.oehl@agroscope.admin.ch.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nogueira Cardoso</LastName><ForeName>Elke Jurandy Bran</ForeName><Initials>EJ</Initials><AffiliationInfo><Affiliation>Soil Science Department, Soil Microbiology Lab, University of São Paulo, ESALQ, Pádua Dias Ave, no. 11, CEP 13418-900, Piracicaba, SP, Brazil. ejbncard@usp.br.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>08</Month><Day>25</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Microb Ecol</MedlineTA><NlmUniqueID>7500663</NlmUniqueID><ISSNLinking>0095-3628</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000531" MajorTopicYN="N">Altitude</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D044822" MajorTopicYN="N">Biodiversity</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001938" MajorTopicYN="N">Brazil</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D065928" MajorTopicYN="N">Forests</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005658" MajorTopicYN="N">Fungi</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D058441" MajorTopicYN="N">Rhizosphere</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012621" MajorTopicYN="N">Seasons</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">AMF spores</Keyword><Keyword MajorTopicYN="N">Forest soils</Keyword><Keyword MajorTopicYN="N">Glomeromycetes</Keyword><Keyword MajorTopicYN="N">Seasonality</Keyword><Keyword MajorTopicYN="N">Species diversity</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>04</Month><Day>27</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>08</Month><Day>06</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>8</Month><Day>26</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>8</Month><Day>26</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>10</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">26304552</ArticleId><ArticleId 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