Genetic Diversity and Association Characters of Bacteria Isolated from Arbuscular Mycorrhizal Fungal Spore Walls.
Identifieur interne : 000F84 ( Main/Corpus ); précédent : 000F83; suivant : 000F85Genetic Diversity and Association Characters of Bacteria Isolated from Arbuscular Mycorrhizal Fungal Spore Walls.
Auteurs : Gopal Selvakumar ; Ramasamy Krishnamoorthy ; Kiyoon Kim ; Tong-Min SaSource :
- PloS one [ 1932-6203 ] ; 2016.
English descriptors
- KwdEn :
- Bacteria (classification), Bacteria (enzymology), Bacteria (genetics), Bacteria (isolation & purification), Cell Wall (microbiology), Cellulase (genetics), Cellulase (metabolism), Chitinases (genetics), Chitinases (metabolism), Cluster Analysis (MeSH), Genetic Variation (MeSH), Gram-Positive Bacteria (classification), Gram-Positive Bacteria (genetics), Gram-Positive Bacteria (isolation & purification), Mycorrhizae (physiology), Peptide Hydrolases (genetics), Peptide Hydrolases (metabolism), Phylogeny (MeSH), Polymerase Chain Reaction (MeSH), RNA, Ribosomal, 18S (genetics), RNA, Ribosomal, 18S (metabolism), Sequence Analysis, DNA (MeSH), Spores, Fungal (growth & development).
- MESH :
- chemical , genetics : Cellulase, Chitinases, Peptide Hydrolases, RNA, Ribosomal, 18S.
- classification : Bacteria, Gram-Positive Bacteria.
- enzymology : Bacteria.
- genetics : Bacteria, Gram-Positive Bacteria.
- growth & development : Spores, Fungal.
- isolation & purification : Bacteria, Gram-Positive Bacteria.
- chemical , metabolism : Cellulase, Chitinases, Peptide Hydrolases, RNA, Ribosomal, 18S.
- microbiology : Cell Wall.
- physiology : Mycorrhizae.
- Cluster Analysis, Genetic Variation, Phylogeny, Polymerase Chain Reaction, Sequence Analysis, DNA.
Abstract
Association between arbuscular mycorrhizal fungi (AMF) and bacteria has long been studied. However, the factors influencing their association in the natural environment is still unknown. This study aimed to isolate bacteria associated with spore walls of AMF and identify their potential characters for association. Spores collected from coastal reclamation land were differentiated based on their morphology and identified by 18S rDNA sequencing as Funneliformis caledonium, Racocetra alborosea and Funneliformis mosseae. Bacteria associated with AMF spore walls were isolated after treating them with disinfection solution at different time intervals. After 0, 10 and 20 min of spore disinfection, 86, 24 and 10 spore associated bacteria (SAB) were isolated, respectively. BOX-PCR fingerprinting analysis showed that diverse bacterial communities were associated to AMF spores. Bacteria belonging to the same genera could associate with different AMF spores. Gram positive bacteria were more closely associated with AMF spores. Isolated SAB were characterized and tested for spore association characters such as chitinase, protease, cellulase enzymes and exopolysaccharide production (EPS). Among the 120 SAB, 113 SAB were able to show one or more characters for association and seven SAB did not show any association characters. The 16S rDNA sequence of SAB revealed that bacteria belonging to the phyla Firmicutes, Proteobacteria, Actinobacteria and Bactereiodes were associated with AMF spore walls.
DOI: 10.1371/journal.pone.0160356
PubMed: 27479250
PubMed Central: PMC4968797
Links to Exploration step
pubmed:27479250Le document en format XML
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Kim</name><affiliation><nlm:affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Sa, Tong Min" sort="Sa, Tong Min" uniqKey="Sa T" first="Tong-Min" last="Sa">Tong-Min Sa</name><affiliation><nlm:affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2016">2016</date><idno type="RBID">pubmed:27479250</idno><idno type="pmid">27479250</idno><idno type="doi">10.1371/journal.pone.0160356</idno><idno type="pmc">PMC4968797</idno><idno type="wicri:Area/Main/Corpus">000F84</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000F84</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genetic Diversity and Association Characters of Bacteria Isolated from Arbuscular Mycorrhizal Fungal Spore Walls.</title><author><name sortKey="Selvakumar, Gopal" sort="Selvakumar, Gopal" uniqKey="Selvakumar G" first="Gopal" last="Selvakumar">Gopal Selvakumar</name><affiliation><nlm:affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Krishnamoorthy, Ramasamy" sort="Krishnamoorthy, Ramasamy" uniqKey="Krishnamoorthy R" first="Ramasamy" last="Krishnamoorthy">Ramasamy Krishnamoorthy</name><affiliation><nlm:affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Kim, Kiyoon" sort="Kim, Kiyoon" uniqKey="Kim K" first="Kiyoon" last="Kim">Kiyoon Kim</name><affiliation><nlm:affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</nlm:affiliation></affiliation></author><author><name sortKey="Sa, Tong Min" sort="Sa, Tong Min" uniqKey="Sa T" first="Tong-Min" last="Sa">Tong-Min Sa</name><affiliation><nlm:affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</nlm:affiliation></affiliation></author></analytic><series><title level="j">PloS one</title><idno type="eISSN">1932-6203</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacteria (classification)</term><term>Bacteria (enzymology)</term><term>Bacteria (genetics)</term><term>Bacteria (isolation & purification)</term><term>Cell Wall (microbiology)</term><term>Cellulase (genetics)</term><term>Cellulase (metabolism)</term><term>Chitinases (genetics)</term><term>Chitinases (metabolism)</term><term>Cluster Analysis (MeSH)</term><term>Genetic Variation (MeSH)</term><term>Gram-Positive Bacteria (classification)</term><term>Gram-Positive Bacteria (genetics)</term><term>Gram-Positive Bacteria (isolation & purification)</term><term>Mycorrhizae (physiology)</term><term>Peptide Hydrolases (genetics)</term><term>Peptide Hydrolases (metabolism)</term><term>Phylogeny (MeSH)</term><term>Polymerase Chain Reaction (MeSH)</term><term>RNA, Ribosomal, 18S (genetics)</term><term>RNA, Ribosomal, 18S (metabolism)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Spores, Fungal (growth & development)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Cellulase</term><term>Chitinases</term><term>Peptide Hydrolases</term><term>RNA, Ribosomal, 18S</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Bacteria</term><term>Gram-Positive Bacteria</term></keywords><keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Bacteria</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Bacteria</term><term>Gram-Positive Bacteria</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Spores, Fungal</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Bacteria</term><term>Gram-Positive Bacteria</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Cellulase</term><term>Chitinases</term><term>Peptide Hydrolases</term><term>RNA, Ribosomal, 18S</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Cell Wall</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Mycorrhizae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Cluster Analysis</term><term>Genetic Variation</term><term>Phylogeny</term><term>Polymerase Chain Reaction</term><term>Sequence Analysis, DNA</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Association between arbuscular mycorrhizal fungi (AMF) and bacteria has long been studied. However, the factors influencing their association in the natural environment is still unknown. This study aimed to isolate bacteria associated with spore walls of AMF and identify their potential characters for association. Spores collected from coastal reclamation land were differentiated based on their morphology and identified by 18S rDNA sequencing as Funneliformis caledonium, Racocetra alborosea and Funneliformis mosseae. Bacteria associated with AMF spore walls were isolated after treating them with disinfection solution at different time intervals. After 0, 10 and 20 min of spore disinfection, 86, 24 and 10 spore associated bacteria (SAB) were isolated, respectively. BOX-PCR fingerprinting analysis showed that diverse bacterial communities were associated to AMF spores. Bacteria belonging to the same genera could associate with different AMF spores. Gram positive bacteria were more closely associated with AMF spores. Isolated SAB were characterized and tested for spore association characters such as chitinase, protease, cellulase enzymes and exopolysaccharide production (EPS). Among the 120 SAB, 113 SAB were able to show one or more characters for association and seven SAB did not show any association characters. The 16S rDNA sequence of SAB revealed that bacteria belonging to the phyla Firmicutes, Proteobacteria, Actinobacteria and Bactereiodes were associated with AMF spore walls. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">27479250</PMID><DateCompleted><Year>2017</Year><Month>08</Month><Day>22</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN><JournalIssue CitedMedium="Internet"><Volume>11</Volume><Issue>8</Issue><PubDate><Year>2016</Year></PubDate></JournalIssue><Title>PloS one</Title><ISOAbbreviation>PLoS One</ISOAbbreviation></Journal><ArticleTitle>Genetic Diversity and Association Characters of Bacteria Isolated from Arbuscular Mycorrhizal Fungal Spore Walls.</ArticleTitle><Pagination><MedlinePgn>e0160356</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0160356</ELocationID><Abstract><AbstractText>Association between arbuscular mycorrhizal fungi (AMF) and bacteria has long been studied. However, the factors influencing their association in the natural environment is still unknown. This study aimed to isolate bacteria associated with spore walls of AMF and identify their potential characters for association. Spores collected from coastal reclamation land were differentiated based on their morphology and identified by 18S rDNA sequencing as Funneliformis caledonium, Racocetra alborosea and Funneliformis mosseae. Bacteria associated with AMF spore walls were isolated after treating them with disinfection solution at different time intervals. After 0, 10 and 20 min of spore disinfection, 86, 24 and 10 spore associated bacteria (SAB) were isolated, respectively. BOX-PCR fingerprinting analysis showed that diverse bacterial communities were associated to AMF spores. Bacteria belonging to the same genera could associate with different AMF spores. Gram positive bacteria were more closely associated with AMF spores. Isolated SAB were characterized and tested for spore association characters such as chitinase, protease, cellulase enzymes and exopolysaccharide production (EPS). Among the 120 SAB, 113 SAB were able to show one or more characters for association and seven SAB did not show any association characters. The 16S rDNA sequence of SAB revealed that bacteria belonging to the phyla Firmicutes, Proteobacteria, Actinobacteria and Bactereiodes were associated with AMF spore walls. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Selvakumar</LastName><ForeName>Gopal</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Krishnamoorthy</LastName><ForeName>Ramasamy</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Kiyoon</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sa</LastName><ForeName>Tong-Min</ForeName><Initials>TM</Initials><AffiliationInfo><Affiliation>Department of Environmental and Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk, Republic of Korea.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>08</Month><Day>01</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>PLoS One</MedlineTA><NlmUniqueID>101285081</NlmUniqueID><ISSNLinking>1932-6203</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012337">RNA, Ribosomal, 18S</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 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