Impact of poplar-based phytomanagement on soil properties and microbial communities in a metal-contaminated site.
Identifieur interne : 000F82 ( Main/Corpus ); précédent : 000F81; suivant : 000F83Impact of poplar-based phytomanagement on soil properties and microbial communities in a metal-contaminated site.
Auteurs : Julie Foulon ; Cyril Zappelini ; Alexis Durand ; Benoit Valot ; Damien Blaudez ; Michel ChalotSource :
- FEMS microbiology ecology [ 1574-6941 ] ; 2016.
English descriptors
- KwdEn :
- Biodegradation, Environmental (MeSH), Ecosystem (MeSH), Environment (MeSH), High-Throughput Nucleotide Sequencing (MeSH), Metals (analysis), Metals (metabolism), Microbial Consortia (MeSH), Mycorrhizae (MeSH), Plant Roots (microbiology), Populus (MeSH), Soil (chemistry), Soil Microbiology (MeSH), Soil Pollutants (analysis), Soil Pollutants (metabolism).
- MESH :
- chemical , analysis : Metals, Soil Pollutants.
- chemical , chemistry : Soil.
- chemical , metabolism : Metals, Soil Pollutants.
- microbiology : Plant Roots.
- Biodegradation, Environmental, Ecosystem, Environment, High-Throughput Nucleotide Sequencing, Microbial Consortia, Mycorrhizae, Populus, Soil Microbiology.
Abstract
Despite a long history of use in phytomanagement strategies, the impacts of poplar trees on the structure and function of microbial communities that live in the soil remain largely unknown. The current study combined fungal and bacterial community analyses from different management regimes using Illumina-based sequencing with soil analysis. The poplar phytomanagement regimes led to a significant increase in soil fertility and a decreased bioavailability of Zn and Cd, in concert with changes in the microbial communities. The most notable changes in the relative abundance of taxa and operational taxonomic units unsurprisingly indicated that root and soil constitute distinct ecological microbial habitats, as exemplified by the dominance of Laccaria in root samples. The poplar cultivar was also an important driver, explaining 12% and 6% of the variance in the fungal and bacterial data sets, respectively. The overall dominance of saprophytic fungi, e.g. Penicillium canescens, might be related to the decomposition activities needed at the experimental site. Our data further highlighted that the mycorrhizal colonization of poplar cultivars varies greatly between the species and genotypes, which is exemplified by the dominance of Scleroderma under Vesten samples. Further interactions between fungal and bacterial functional groups stressed the potential of high-throughput sequencing technologies in uncovering the microbial ecology of disturbed environments.
DOI: 10.1093/femsec/fiw163
PubMed: 27481257
Links to Exploration step
pubmed:27481257Le document en format XML
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<term>Metals (metabolism)</term>
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<term>Soil Pollutants (metabolism)</term>
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<front><div type="abstract" xml:lang="en">Despite a long history of use in phytomanagement strategies, the impacts of poplar trees on the structure and function of microbial communities that live in the soil remain largely unknown. The current study combined fungal and bacterial community analyses from different management regimes using Illumina-based sequencing with soil analysis. The poplar phytomanagement regimes led to a significant increase in soil fertility and a decreased bioavailability of Zn and Cd, in concert with changes in the microbial communities. The most notable changes in the relative abundance of taxa and operational taxonomic units unsurprisingly indicated that root and soil constitute distinct ecological microbial habitats, as exemplified by the dominance of Laccaria in root samples. The poplar cultivar was also an important driver, explaining 12% and 6% of the variance in the fungal and bacterial data sets, respectively. The overall dominance of saprophytic fungi, e.g. Penicillium canescens, might be related to the decomposition activities needed at the experimental site. Our data further highlighted that the mycorrhizal colonization of poplar cultivars varies greatly between the species and genotypes, which is exemplified by the dominance of Scleroderma under Vesten samples. Further interactions between fungal and bacterial functional groups stressed the potential of high-throughput sequencing technologies in uncovering the microbial ecology of disturbed environments.</div>
</front>
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<Abstract><AbstractText>Despite a long history of use in phytomanagement strategies, the impacts of poplar trees on the structure and function of microbial communities that live in the soil remain largely unknown. The current study combined fungal and bacterial community analyses from different management regimes using Illumina-based sequencing with soil analysis. The poplar phytomanagement regimes led to a significant increase in soil fertility and a decreased bioavailability of Zn and Cd, in concert with changes in the microbial communities. The most notable changes in the relative abundance of taxa and operational taxonomic units unsurprisingly indicated that root and soil constitute distinct ecological microbial habitats, as exemplified by the dominance of Laccaria in root samples. The poplar cultivar was also an important driver, explaining 12% and 6% of the variance in the fungal and bacterial data sets, respectively. The overall dominance of saprophytic fungi, e.g. Penicillium canescens, might be related to the decomposition activities needed at the experimental site. Our data further highlighted that the mycorrhizal colonization of poplar cultivars varies greatly between the species and genotypes, which is exemplified by the dominance of Scleroderma under Vesten samples. Further interactions between fungal and bacterial functional groups stressed the potential of high-throughput sequencing technologies in uncovering the microbial ecology of disturbed environments.</AbstractText>
<CopyrightInformation>© FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.</CopyrightInformation>
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